RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 MS4A3Q96HJ5 214 aa12.3□□□□□ -0.44
PRKDC-209ENST00000540819 CCDC61Q9Y6R9 512 aa12.29□□□□□ -0.44
PRKDC-209ENST00000540819 RASEFQ8IZ41 740 aa12.26□□□□□ -0.45
PRKDC-209ENST00000540819 FBXO3Q9UK99 471 aa12.26□□□□□ -0.45
PRKDC-209ENST00000540819 KIF12Q96FN5 646 aa12.24□□□□□ -0.45
PRKDC-209ENST00000540819 ASTLQ6HA08 431 aaPredicted RBP12.19□□□□□ -0.46
PRKDC-209ENST00000540819 MAP3K13O43283 966 aa12.18□□□□□ -0.46
PRKDC-209ENST00000540819 ATMINO43313 823 aaPredicted RBP12.18□□□□□ -0.46
PRKDC-209ENST00000540819 PELP1Q8IZL8 1130 aaKnown RBP12.18□□□□□ -0.46
PRKDC-209ENST00000540819 NUBP1P53384 320 aa12.16□□□□□ -0.46
PRKDC-209ENST00000540819 SLC39A7Q92504 469 aa12.16□□□□□ -0.46
PRKDC-209ENST00000540819 C7P10643 843 aa12.15□□□□□ -0.46
PRKDC-209ENST00000540819 FAM212AQ96EL1 285 aa12.15□□□□□ -0.46
PRKDC-209ENST00000540819 METRNQ9UJH8 293 aa12.13□□□□□ -0.47
PRKDC-209ENST00000540819 ATN1P54259 1190 aaPredicted RBP12.1□□□□□ -0.47
PRKDC-209ENST00000540819 SGIP1Q9BQI5 828 aa12.1□□□□□ -0.47
PRKDC-209ENST00000540819 DCAF8Q5TAQ9 597 aa12.09□□□□□ -0.47
PRKDC-209ENST00000540819 PCDHB13Q9Y5F0 798 aa12.09□□□□□ -0.47
PRKDC-209ENST00000540819 POTEB2H3BUK9 544 aa12.08□□□□□ -0.48
PRKDC-209ENST00000540819 TIE1P35590 1138 aa12.08□□□□□ -0.48
PRKDC-209ENST00000540819 KLHL34Q8N239 644 aa12.08□□□□□ -0.48
PRKDC-209ENST00000540819 BMP2KQ9NSY1 1161 aaPredicted RBP12.08□□□□□ -0.48
PRKDC-209ENST00000540819 TRPC6Q9Y210 931 aa12.06□□□□□ -0.48
PRKDC-209ENST00000540819 OTUD5Q96G74 571 aa12.05□□□□□ -0.48
PRKDC-209ENST00000540819 VASPP50552 380 aaPredicted RBP12.03□□□□□ -0.48
PRKDC-209ENST00000540819 MAMSTRQ6ZN01 415 aa12.01□□□□□ -0.49
PRKDC-209ENST00000540819 TTLL13PA6NNM8 815 aa12□□□□□ -0.49
PRKDC-209ENST00000540819 SEC24BO95487 1268 aa11.98□□□□□ -0.49
PRKDC-209ENST00000540819 IFNL1Q8IU54 200 aa11.98□□□□□ -0.49
PRKDC-209ENST00000540819 PYGBP11216 843 aa11.96□□□□□ -0.49
PRKDC-209ENST00000540819 GSE1Q14687 1217 aa11.94□□□□□ -0.5
PRKDC-209ENST00000540819 TRIM35Q9UPQ4 493 aa11.94□□□□□ -0.5
PRKDC-209ENST00000540819 TMEM106CQ9BVX2 250 aa11.93□□□□□ -0.5
PRKDC-209ENST00000540819 SCUBE2Q9NQ36 999 aa11.93□□□□□ -0.5
PRKDC-209ENST00000540819 IER5LQ5T953 404 aa11.9□□□□□ -0.5
PRKDC-209ENST00000540819 POTEJP0CG39 1038 aa11.89□□□□□ -0.51
PRKDC-209ENST00000540819 POTEFA5A3E0 1075 aa11.88□□□□□ -0.51
PRKDC-209ENST00000540819 COLQQ9Y215 455 aaPredicted RBP11.86□□□□□ -0.51
PRKDC-209ENST00000540819 PCDHB8Q9UN66 801 aa11.85□□□□□ -0.51
PRKDC-209ENST00000540819 SPOCK2Q92563 424 aa11.83□□□□□ -0.52
PRKDC-209ENST00000540819 PLCG2P16885 1265 aa11.82□□□□□ -0.52
PRKDC-209ENST00000540819 ZNF467Q7Z7K2 595 aaPredicted RBP11.81□□□□□ -0.52
PRKDC-209ENST00000540819 CHRM1P11229 460 aaPredicted RBP11.79□□□□□ -0.52
PRKDC-209ENST00000540819 IFNLR1Q8IU57 520 aaPredicted RBP11.79□□□□□ -0.52
PRKDC-209ENST00000540819 CIZ1Q9ULV3 898 aaPredicted RBP11.79□□□□□ -0.52
PRKDC-209ENST00000540819 AMER1Q5JTC6 1135 aaPredicted RBP11.78□□□□□ -0.52
PRKDC-209ENST00000540819 GOLGA2Q08379 1002 aa11.75□□□□□ -0.53
PRKDC-209ENST00000540819 FAM163AQ96GL9 167 aaPredicted RBP11.75□□□□□ -0.53
PRKDC-209ENST00000540819 POTEMA6NI47 508 aa11.74□□□□□ -0.53
PRKDC-209ENST00000540819 OCEL1Q9H607 264 aa11.74□□□□□ -0.53
PRKDC-209ENST00000540819 RTN4Q9NQC3 1192 aaKnown RBP11.74□□□□□ -0.53
PRKDC-209ENST00000540819 IRX5P78411 483 aaPredicted RBP11.72□□□□□ -0.53
PRKDC-209ENST00000540819 POTEGQ6S5H5 508 aa11.71□□□□□ -0.53
PRKDC-209ENST00000540819 MKRN3Q13064 507 aaKnown RBP11.7□□□□□ -0.54
PRKDC-209ENST00000540819 PSEN1P49768 467 aa11.69□□□□□ -0.54
PRKDC-209ENST00000540819 SLAIN1Q8ND83 568 aa11.68□□□□□ -0.54
PRKDC-209ENST00000540819 PLSCR2Q9NRY7 297 aa11.67□□□□□ -0.54
PRKDC-209ENST00000540819 PDAP1Q13442 181 aaKnown RBP11.65□□□□□ -0.54
PRKDC-209ENST00000540819 TRIM41Q8WV44 630 aa11.61□□□□□ -0.55
PRKDC-209ENST00000540819 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.61□□□□□ -0.55
PRKDC-209ENST00000540819 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.6□□□□□ -0.558e-13■□□□□ 10.4
PRKDC-209ENST00000540819 PCDH10Q9P2E7 1040 aa11.6□□□□□ -0.55
PRKDC-209ENST00000540819 L3MBTL3Q96JM7 780 aaPredicted RBP11.59□□□□□ -0.55
PRKDC-209ENST00000540819 LCE2DQ5TA82 110 aaPredicted RBP11.56□□□□□ -0.56
PRKDC-209ENST00000540819 CABP2Q9NPB3 220 aa11.55□□□□□ -0.56
PRKDC-209ENST00000540819 PDCD7Q8N8D1 485 aaKnown RBP11.54□□□□□ -0.56
PRKDC-209ENST00000540819 SNPHO15079 494 aa11.53□□□□□ -0.56
PRKDC-209ENST00000540819 C3orf67Q6ZVT6 689 aa11.53□□□□□ -0.56
PRKDC-209ENST00000540819 G3V3G9 751 aa11.5□□□□□ -0.57
PRKDC-209ENST00000540819 ST18O60284 1047 aa11.48□□□□□ -0.57
PRKDC-209ENST00000540819 DPY19L2Q6NUT2 758 aa11.43□□□□□ -0.58
PRKDC-209ENST00000540819 ILDR1Q86SU0 546 aaPredicted RBP11.43□□□□□ -0.58
PRKDC-209ENST00000540819 RIOK3O14730 519 aaKnown RBP11.42□□□□□ -0.58
PRKDC-209ENST00000540819 BOLA1Q9Y3E2 137 aa11.41□□□□□ -0.58
PRKDC-209ENST00000540819 CDAN1Q8IWY9 1227 aa11.4□□□□□ -0.58
PRKDC-209ENST00000540819 EFCAB3Q8N7B9 438 aa11.4□□□□□ -0.58
PRKDC-209ENST00000540819 TMEM121BQ9BXQ6 578 aaPredicted RBP11.4□□□□□ -0.58
PRKDC-209ENST00000540819 VGFO15240 615 aaPredicted RBP11.38□□□□□ -0.59
PRKDC-209ENST00000540819 TAOK2Q9UL54 1235 aa11.37□□□□□ -0.59
PRKDC-209ENST00000540819 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.34□□□□□ -0.59
PRKDC-209ENST00000540819 SOX12O15370 315 aa11.34□□□□□ -0.59
PRKDC-209ENST00000540819 ZFP91Q96JP5 570 aaPredicted RBP11.34□□□□□ -0.59
PRKDC-209ENST00000540819 RNF25Q96BH1 459 aaPredicted RBP11.33□□□□□ -0.6
PRKDC-209ENST00000540819 MARVELD3Q96A59 401 aa11.31□□□□□ -0.6
PRKDC-209ENST00000540819 ECM2O94769 699 aaPredicted RBP11.27□□□□□ -0.61
PRKDC-209ENST00000540819 EMP3P54852 163 aa11.26□□□□□ -0.61
PRKDC-209ENST00000540819 ZNF710Q8N1W2 664 aa11.24□□□□□ -0.61
PRKDC-209ENST00000540819 PHF8Q9UPP1 1060 aa11.24□□□□□ -0.61
PRKDC-209ENST00000540819 BCL11BQ9C0K0 894 aaPredicted RBP11.23□□□□□ -0.61
PRKDC-209ENST00000540819 STK24Q9Y6E0 443 aa11.23□□□□□ -0.61
PRKDC-209ENST00000540819 NLRP6P59044 892 aa11.21□□□□□ -0.61
PRKDC-209ENST00000540819 DOK7Q18PE1 504 aa11.21□□□□□ -0.61
PRKDC-209ENST00000540819 MICALL2Q8IY33 904 aa11.21□□□□□ -0.61
PRKDC-209ENST00000540819 FAM205CA6NFA0 338 aa11.19□□□□□ -0.62
PRKDC-209ENST00000540819 STK25O00506 426 aa11.19□□□□□ -0.62
PRKDC-209ENST00000540819 RIMBP2O15034 1052 aa11.18□□□□□ -0.62
PRKDC-209ENST00000540819 MS4A4AQ96JQ5 239 aa11.18□□□□□ -0.62
PRKDC-209ENST00000540819 HOXB3P14651 431 aaPredicted RBP11.17□□□□□ -0.62
PRKDC-209ENST00000540819 HS3ST6Q96QI5 342 aa11.15□□□□□ -0.62
PRKDC-209ENST00000540819 HOXB1P14653 301 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms