RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 RASEFQ8IZ41 740 aa16.82■□□□□ 0.28
SYNE1-232ENST00000535081 ASTLQ6HA08 431 aaPredicted RBP16.79■□□□□ 0.28
SYNE1-232ENST00000535081 PELP1Q8IZL8 1130 aaKnown RBP16.79■□□□□ 0.28
SYNE1-232ENST00000535081 KIF12Q96FN5 646 aa16.78■□□□□ 0.28
SYNE1-232ENST00000535081 ATMINO43313 823 aaPredicted RBP16.75■□□□□ 0.27
SYNE1-232ENST00000535081 ZBTB47Q9UFB7 747 aaPredicted RBP16.75■□□□□ 0.27
SYNE1-232ENST00000535081 POTEB2H3BUK9 544 aa16.7■□□□□ 0.26
SYNE1-232ENST00000535081 MAP3K13O43283 966 aa16.68■□□□□ 0.26
SYNE1-232ENST00000535081 METRNQ9UJH8 293 aa16.68■□□□□ 0.26
SYNE1-232ENST00000535081 SLC39A7Q92504 469 aa16.67■□□□□ 0.26
SYNE1-232ENST00000535081 NUBP1P53384 320 aa16.66■□□□□ 0.26
SYNE1-232ENST00000535081 C7P10643 843 aa16.64■□□□□ 0.25
SYNE1-232ENST00000535081 OTUD5Q96G74 571 aa16.64■□□□□ 0.25
SYNE1-232ENST00000535081 ATN1P54259 1190 aaPredicted RBP16.63■□□□□ 0.25
SYNE1-232ENST00000535081 TRPC6Q9Y210 931 aa16.62■□□□□ 0.25
SYNE1-232ENST00000535081 BMP2KQ9NSY1 1161 aaPredicted RBP16.61■□□□□ 0.25
SYNE1-232ENST00000535081 FBXO3Q9UK99 471 aa16.6■□□□□ 0.25
SYNE1-232ENST00000535081 TIE1P35590 1138 aa16.57■□□□□ 0.24
SYNE1-232ENST00000535081 FAM212AQ96EL1 285 aa16.57■□□□□ 0.24
SYNE1-232ENST00000535081 SGIP1Q9BQI5 828 aa16.53■□□□□ 0.24
SYNE1-232ENST00000535081 PCDHB13Q9Y5F0 798 aa16.53■□□□□ 0.24
SYNE1-232ENST00000535081 TTLL13PA6NNM8 815 aa16.48■□□□□ 0.23
SYNE1-232ENST00000535081 POTEJP0CG39 1038 aa16.46■□□□□ 0.23
SYNE1-232ENST00000535081 IFNL1Q8IU54 200 aa16.43■□□□□ 0.22
SYNE1-232ENST00000535081 MAMSTRQ6ZN01 415 aa16.42■□□□□ 0.22
SYNE1-232ENST00000535081 POTEFA5A3E0 1075 aa16.41■□□□□ 0.22
SYNE1-232ENST00000535081 VASPP50552 380 aaPredicted RBP16.4■□□□□ 0.22
SYNE1-232ENST00000535081 DCAF8Q5TAQ9 597 aa16.39■□□□□ 0.21
SYNE1-232ENST00000535081 TRIM35Q9UPQ4 493 aa16.38■□□□□ 0.21
SYNE1-232ENST00000535081 SCUBE2Q9NQ36 999 aa16.34■□□□□ 0.21
SYNE1-232ENST00000535081 SEC24BO95487 1268 aa16.33■□□□□ 0.2
SYNE1-232ENST00000535081 PYGBP11216 843 aa16.33■□□□□ 0.2
SYNE1-232ENST00000535081 KLHL34Q8N239 644 aa16.33■□□□□ 0.2
SYNE1-232ENST00000535081 IER5LQ5T953 404 aa16.32■□□□□ 0.2
SYNE1-232ENST00000535081 TMEM106CQ9BVX2 250 aa16.32■□□□□ 0.2
SYNE1-232ENST00000535081 COLQQ9Y215 455 aaPredicted RBP16.32■□□□□ 0.2
SYNE1-232ENST00000535081 GSE1Q14687 1217 aa16.22■□□□□ 0.19
SYNE1-232ENST00000535081 PCDHB8Q9UN66 801 aa16.2■□□□□ 0.18
SYNE1-232ENST00000535081 POTEMA6NI47 508 aa16.19■□□□□ 0.18
SYNE1-232ENST00000535081 POTEGQ6S5H5 508 aa16.16■□□□□ 0.18
SYNE1-232ENST00000535081 PLCG2P16885 1265 aa16.14■□□□□ 0.17
SYNE1-232ENST00000535081 IRX5P78411 483 aaPredicted RBP16.12■□□□□ 0.17
SYNE1-232ENST00000535081 ZNF467Q7Z7K2 595 aaPredicted RBP16.11■□□□□ 0.17
SYNE1-232ENST00000535081 IFNLR1Q8IU57 520 aaPredicted RBP16.09■□□□□ 0.17
SYNE1-232ENST00000535081 CHRM1P11229 460 aaPredicted RBP16.07■□□□□ 0.16
SYNE1-232ENST00000535081 LCE2DQ5TA82 110 aaPredicted RBP16.07■□□□□ 0.16
SYNE1-232ENST00000535081 FAM163AQ96GL9 167 aaPredicted RBP16.07■□□□□ 0.16
SYNE1-232ENST00000535081 PLSCR2Q9NRY7 297 aa16.07■□□□□ 0.16
SYNE1-232ENST00000535081 SPOCK2Q92563 424 aa16.06■□□□□ 0.16
SYNE1-232ENST00000535081 OCEL1Q9H607 264 aa16.04■□□□□ 0.16
SYNE1-232ENST00000535081 SLAIN1Q8ND83 568 aa15.99■□□□□ 0.15
SYNE1-232ENST00000535081 CIZ1Q9ULV3 898 aaPredicted RBP15.98■□□□□ 0.15
SYNE1-232ENST00000535081 PSEN1P49768 467 aa15.95■□□□□ 0.14
SYNE1-232ENST00000535081 GOLGA2Q08379 1002 aa15.95■□□□□ 0.14
SYNE1-232ENST00000535081 MKRN3Q13064 507 aaKnown RBP15.92■□□□□ 0.14
SYNE1-232ENST00000535081 PCDH10Q9P2E7 1040 aa15.92■□□□□ 0.14
SYNE1-232ENST00000535081 PDAP1Q13442 181 aaKnown RBP15.89■□□□□ 0.13
SYNE1-232ENST00000535081 PDCD7Q8N8D1 485 aaKnown RBP15.89■□□□□ 0.13
SYNE1-232ENST00000535081 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.85■□□□□ 0.13
SYNE1-232ENST00000535081 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.83■□□□□ 0.12
SYNE1-232ENST00000535081 ST18O60284 1047 aa15.79■□□□□ 0.12
SYNE1-232ENST00000535081 L3MBTL3Q96JM7 780 aaPredicted RBP15.78■□□□□ 0.12
SYNE1-232ENST00000535081 TRIM41Q8WV44 630 aa15.77■□□□□ 0.12
SYNE1-232ENST00000535081 CABP2Q9NPB3 220 aa15.77■□□□□ 0.12
SYNE1-232ENST00000535081 C3orf67Q6ZVT6 689 aa15.76■□□□□ 0.11
SYNE1-232ENST00000535081 ILDR1Q86SU0 546 aaPredicted RBP15.74■□□□□ 0.11
SYNE1-232ENST00000535081 SNPHO15079 494 aa15.71■□□□□ 0.11
SYNE1-232ENST00000535081 CDAN1Q8IWY9 1227 aa15.67■□□□□ 0.1
SYNE1-232ENST00000535081 DPY19L2Q6NUT2 758 aa15.66■□□□□ 0.1
SYNE1-232ENST00000535081 TMEM121BQ9BXQ6 578 aaPredicted RBP15.65■□□□□ 0.1
SYNE1-232ENST00000535081 G3V3G9 751 aa15.59■□□□□ 0.09
SYNE1-232ENST00000535081 BOLA1Q9Y3E2 137 aa15.59■□□□□ 0.09
SYNE1-232ENST00000535081 EFCAB3Q8N7B9 438 aa15.58■□□□□ 0.08
SYNE1-232ENST00000535081 RIOK3O14730 519 aaKnown RBP15.56■□□□□ 0.08
SYNE1-232ENST00000535081 RNF25Q96BH1 459 aaPredicted RBP15.56■□□□□ 0.08
SYNE1-232ENST00000535081 MARVELD3Q96A59 401 aa15.54■□□□□ 0.08
SYNE1-232ENST00000535081 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.49■□□□□ 0.07
SYNE1-232ENST00000535081 VGFO15240 615 aaPredicted RBP15.49■□□□□ 0.07
SYNE1-232ENST00000535081 ZFP91Q96JP5 570 aaPredicted RBP15.49■□□□□ 0.07
SYNE1-232ENST00000535081 EMP3P54852 163 aa15.44■□□□□ 0.06
SYNE1-232ENST00000535081 SOX12O15370 315 aa15.42■□□□□ 0.06
SYNE1-232ENST00000535081 HOXB3P14651 431 aaPredicted RBP15.38■□□□□ 0.05
SYNE1-232ENST00000535081 MICALL2Q8IY33 904 aa15.37■□□□□ 0.05
SYNE1-232ENST00000535081 MS4A4AQ96JQ5 239 aa15.36■□□□□ 0.05
SYNE1-232ENST00000535081 PHF8Q9UPP1 1060 aa15.36■□□□□ 0.05
SYNE1-232ENST00000535081 TAOK2Q9UL54 1235 aa15.34■□□□□ 0.05
SYNE1-232ENST00000535081 HS3ST6Q96QI5 342 aa15.33■□□□□ 0.04
SYNE1-232ENST00000535081 FAM205CA6NFA0 338 aa15.32■□□□□ 0.04
SYNE1-232ENST00000535081 DOK7Q18PE1 504 aa15.31■□□□□ 0.04
SYNE1-232ENST00000535081 ZNF710Q8N1W2 664 aa15.31■□□□□ 0.04
SYNE1-232ENST00000535081 BCL11BQ9C0K0 894 aaPredicted RBP15.31■□□□□ 0.04
SYNE1-232ENST00000535081 POTEB3A0JP26 581 aa15.29■□□□□ 0.04
SYNE1-232ENST00000535081 POTEBQ6S5H4 581 aa15.29■□□□□ 0.04
SYNE1-232ENST00000535081 ECM2O94769 699 aaPredicted RBP15.28■□□□□ 0.04
SYNE1-232ENST00000535081 TMEM92Q6UXU6 159 aa15.28■□□□□ 0.04
SYNE1-232ENST00000535081 SPNS2Q8IVW8 549 aa15.28■□□□□ 0.04
SYNE1-232ENST00000535081 HOXB1P14653 301 aaPredicted RBP15.26■□□□□ 0.03
SYNE1-232ENST00000535081 STK24Q9Y6E0 443 aa15.26■□□□□ 0.03
SYNE1-232ENST00000535081 NLRP6P59044 892 aa15.25■□□□□ 0.03
SYNE1-232ENST00000535081 RIMBP2O15034 1052 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms