RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 DCAF8L2P0C7V8 631 aa8.46□□□□□ -1.05
CSMD3-210ENST00000534172 RASEFQ8IZ41 740 aa8.43□□□□□ -1.06
CSMD3-210ENST00000534172 RGL2O15211 777 aa8.39□□□□□ -1.07
CSMD3-210ENST00000534172 RIOK3O14730 519 aaKnown RBP8.38□□□□□ -1.07
CSMD3-210ENST00000534172 TSPYL2Q9H2G4 693 aaPredicted RBP8.37□□□□□ -1.07
CSMD3-210ENST00000534172 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.37□□□□□ -1.07
CSMD3-210ENST00000534172 BBXQ8WY36 941 aaPredicted RBP8.36□□□□□ -1.07
CSMD3-210ENST00000534172 VGFO15240 615 aaPredicted RBP8.36□□□□□ -1.07
CSMD3-210ENST00000534172 SLC24A1O60721 1099 aa8.36□□□□□ -1.07
CSMD3-210ENST00000534172 ZNF467Q7Z7K2 595 aaPredicted RBP8.35□□□□□ -1.07
CSMD3-210ENST00000534172 SGIP1Q9BQI5 828 aa8.35□□□□□ -1.07
CSMD3-210ENST00000534172 PYGBP11216 843 aa8.31□□□□□ -1.08
CSMD3-210ENST00000534172 CCDC61Q9Y6R9 512 aa8.31□□□□□ -1.08
CSMD3-210ENST00000534172 HS6ST3Q8IZP7 471 aa8.31□□□□□ -1.08
CSMD3-210ENST00000534172 CD44P16070 742 aaKnown RBP8.3□□□□□ -1.08
CSMD3-210ENST00000534172 CLCN6P51797 869 aa8.29□□□□□ -1.08
CSMD3-210ENST00000534172 ZNF579Q8NAF0 562 aaKnown RBP8.29□□□□□ -1.08
CSMD3-210ENST00000534172 DNAJC5Q9H3Z4 198 aa8.29□□□□□ -1.08
CSMD3-210ENST00000534172 CHGAP10645 457 aaKnown RBP8.29□□□□□ -1.08
CSMD3-210ENST00000534172 ZRANB1Q9UGI0 708 aa8.29□□□□□ -1.08
CSMD3-210ENST00000534172 PLCB2Q00722 1185 aa8.28□□□□□ -1.08
CSMD3-210ENST00000534172 C19orf67A6NJJ6 358 aa8.27□□□□□ -1.09
CSMD3-210ENST00000534172 RNF25Q96BH1 459 aaPredicted RBP8.27□□□□□ -1.09
CSMD3-210ENST00000534172 PDAP1Q13442 181 aaKnown RBP8.25□□□□□ -1.09
CSMD3-210ENST00000534172 RYDENQ9NUL5 291 aaKnown RBP8.25□□□□□ -1.09
CSMD3-210ENST00000534172 KIF12Q96FN5 646 aa8.24□□□□□ -1.09
CSMD3-210ENST00000534172 PCDHB13Q9Y5F0 798 aa8.23□□□□□ -1.09
CSMD3-210ENST00000534172 STK25O00506 426 aa8.23□□□□□ -1.09
CSMD3-210ENST00000534172 SPRYD3Q8NCJ5 442 aa8.22□□□□□ -1.09
CSMD3-210ENST00000534172 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.21□□□□□ -1.1
CSMD3-210ENST00000534172 ZFP91Q96JP5 570 aaPredicted RBP8.21□□□□□ -1.1
CSMD3-210ENST00000534172 STK24Q9Y6E0 443 aa8.2□□□□□ -1.1
CSMD3-210ENST00000534172 MAP3K13O43283 966 aa8.19□□□□□ -1.1
CSMD3-210ENST00000534172 PSEN1P49768 467 aa8.19□□□□□ -1.1
CSMD3-210ENST00000534172 HAX1O00165 279 aa8.18□□□□□ -1.1
CSMD3-210ENST00000534172 BCL11BQ9C0K0 894 aaPredicted RBP8.18□□□□□ -1.1
CSMD3-210ENST00000534172 PAXIP1Q6ZW49 1069 aaPredicted RBP8.18□□□□□ -1.1
CSMD3-210ENST00000534172 PCDHB8Q9UN66 801 aa8.17□□□□□ -1.1
CSMD3-210ENST00000534172 IFNL1Q8IU54 200 aa8.16□□□□□ -1.1
CSMD3-210ENST00000534172 CFAP44Q96MT7 982 aa8.15□□□□□ -1.1
CSMD3-210ENST00000534172 PHF12Q96QT6 1004 aa8.15□□□□□ -1.1
CSMD3-210ENST00000534172 HAP1P54257 671 aaPredicted RBP8.14□□□□□ -1.11
CSMD3-210ENST00000534172 VSIG10Q8N0Z9 540 aa8.11□□□□□ -1.11
CSMD3-210ENST00000534172 SOX12O15370 315 aa8.1□□□□□ -1.11
CSMD3-210ENST00000534172 TIE1P35590 1138 aa8.1□□□□□ -1.11
CSMD3-210ENST00000534172 GOLGA2Q08379 1002 aa8.1□□□□□ -1.11
CSMD3-210ENST00000534172 POTEHQ6S545 545 aa8.1□□□□□ -1.11
CSMD3-210ENST00000534172 MS4A3Q96HJ5 214 aa8.08□□□□□ -1.12
CSMD3-210ENST00000534172 GTPBP6O43824 516 aaPredicted RBP8.07□□□□□ -1.12
CSMD3-210ENST00000534172 TMEM106CQ9BVX2 250 aa8.07□□□□□ -1.12
CSMD3-210ENST00000534172 NLRP6P59044 892 aa8.06□□□□□ -1.12
CSMD3-210ENST00000534172 NKX1-1Q15270 411 aaPredicted RBP8.06□□□□□ -1.12
CSMD3-210ENST00000534172 CABP2Q9NPB3 220 aa8.05□□□□□ -1.12
CSMD3-210ENST00000534172 MKRN3Q13064 507 aaKnown RBP8.04□□□□□ -1.12
CSMD3-210ENST00000534172 EFCAB3Q8N7B9 438 aa8.01□□□□□ -1.13
CSMD3-210ENST00000534172 TTLL13PA6NNM8 815 aa7.99□□□□□ -1.13
CSMD3-210ENST00000534172 GALR2O43603 387 aaPredicted RBP7.99□□□□□ -1.13
CSMD3-210ENST00000534172 MFRPQ9BY79 579 aa7.98□□□□□ -1.13
CSMD3-210ENST00000534172 BMP2KQ9NSY1 1161 aaPredicted RBP7.98□□□□□ -1.13
CSMD3-210ENST00000534172 EVX2Q03828 476 aa7.98□□□□□ -1.13
CSMD3-210ENST00000534172 TSHZ2Q9NRE2 1034 aa7.97□□□□□ -1.13
CSMD3-210ENST00000534172 IER5LQ5T953 404 aa7.97□□□□□ -1.13
CSMD3-210ENST00000534172 GABBR2O75899 941 aa7.96□□□□□ -1.13
CSMD3-210ENST00000534172 FBXO22Q8NEZ5 403 aa7.96□□□□□ -1.14
CSMD3-210ENST00000534172 ASTLQ6HA08 431 aaPredicted RBP7.95□□□□□ -1.14
CSMD3-210ENST00000534172 TRPC6Q9Y210 931 aa7.95□□□□□ -1.14
CSMD3-210ENST00000534172 PHF8Q9UPP1 1060 aa7.94□□□□□ -1.14
CSMD3-210ENST00000534172 DCBLD2Q96PD2 775 aa7.94□□□□□ -1.14
CSMD3-210ENST00000534172 TRIM35Q9UPQ4 493 aa7.94□□□□□ -1.14
CSMD3-210ENST00000534172 ATMINO43313 823 aaPredicted RBP7.93□□□□□ -1.14
CSMD3-210ENST00000534172 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.92□□□□□ -1.14
CSMD3-210ENST00000534172 ILDR1Q86SU0 546 aaPredicted RBP7.91□□□□□ -1.14
CSMD3-210ENST00000534172 SP7Q8TDD2 431 aaPredicted RBP7.91□□□□□ -1.14
CSMD3-210ENST00000534172 ATN1P54259 1190 aaPredicted RBP7.9□□□□□ -1.15
CSMD3-210ENST00000534172 OCEL1Q9H607 264 aa7.89□□□□□ -1.15
CSMD3-210ENST00000534172 WDR70Q9NW82 654 aa7.89□□□□□ -1.15
CSMD3-210ENST00000534172 SLC39A7Q92504 469 aa7.88□□□□□ -1.15
CSMD3-210ENST00000534172 KDM2AQ9Y2K7 1162 aa7.88□□□□□ -1.15
CSMD3-210ENST00000534172 G3V3G9 751 aa7.88□□□□□ -1.15
CSMD3-210ENST00000534172 PLCG2P16885 1265 aa7.87□□□□□ -1.15
CSMD3-210ENST00000534172 BCANQ96GW7 911 aa7.87□□□□□ -1.15
CSMD3-210ENST00000534172 C7P10643 843 aa7.86□□□□□ -1.15
CSMD3-210ENST00000534172 MS4A4AQ96JQ5 239 aa7.86□□□□□ -1.15
CSMD3-210ENST00000534172 L3MBTL3Q96JM7 780 aaPredicted RBP7.86□□□□□ -1.15
CSMD3-210ENST00000534172 PDE4AP27815 886 aa7.85□□□□□ -1.15
CSMD3-210ENST00000534172 IRX5P78411 483 aaPredicted RBP7.85□□□□□ -1.15
CSMD3-210ENST00000534172 P3H3Q8IVL6 736 aa7.85□□□□□ -1.15
CSMD3-210ENST00000534172 PPP1R37O75864 691 aa7.84□□□□□ -1.15
CSMD3-210ENST00000534172 SEC24BO95487 1268 aa7.84□□□□□ -1.16
CSMD3-210ENST00000534172 PDCD7Q8N8D1 485 aaKnown RBP7.8□□□□□ -1.16
CSMD3-210ENST00000534172 BOLA1Q9Y3E2 137 aa7.79□□□□□ -1.16
CSMD3-210ENST00000534172 CADPS2Q86UW7 1296 aa7.78□□□□□ -1.16
CSMD3-210ENST00000534172 NBR1Q14596 966 aa7.77□□□□□ -1.17
CSMD3-210ENST00000534172 MICALL2Q8IY33 904 aa7.77□□□□□ -1.17
CSMD3-210ENST00000534172 TMEM121BQ9BXQ6 578 aaPredicted RBP7.77□□□□□ -1.17
CSMD3-210ENST00000534172 METRNQ9UJH8 293 aa7.76□□□□□ -1.17
CSMD3-210ENST00000534172 MFSD10Q14728 455 aa7.76□□□□□ -1.17
CSMD3-210ENST00000534172 CRISPLD2Q9H0B8 497 aa7.76□□□□□ -1.17
CSMD3-210ENST00000534172 TMC2Q8TDI7 906 aa7.75□□□□□ -1.17
CSMD3-210ENST00000534172 PELP1Q8IZL8 1130 aaKnown RBP7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms