RNA–Protein interactions for RNA: ENST00000531967.5

ECHDC1-222, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene ECHDC1, Length 2,585 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-222ENST00000531967 HMGB1P09429 215 aaKnown RBP8.37□□□□□ -1.07
ECHDC1-222ENST00000531967 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.36□□□□□ -1.07
ECHDC1-222ENST00000531967 HSP90B1P14625 803 aaKnown RBP8.32□□□□□ -1.08
ECHDC1-222ENST00000531967 PLEKHG5O94827 1062 aa8.32□□□□□ -1.08
ECHDC1-222ENST00000531967 HS6ST3Q8IZP7 471 aa8.29□□□□□ -1.08
ECHDC1-222ENST00000531967 KCTD17Q8N5Z5 321 aa8.27□□□□□ -1.08
ECHDC1-222ENST00000531967 P3H3Q8IVL6 736 aa8.26□□□□□ -1.09
ECHDC1-222ENST00000531967 ARID3CA6NKF2 412 aa8.26□□□□□ -1.09
ECHDC1-222ENST00000531967 HOXD11P31277 338 aaPredicted RBP8.25□□□□□ -1.09
ECHDC1-222ENST00000531967 CHMP4AQ9BY43 222 aa8.25□□□□□ -1.09
ECHDC1-222ENST00000531967 SLC24A3Q9HC58 644 aa8.25□□□□□ -1.09
ECHDC1-222ENST00000531967 RAD21O60216 631 aa8.24□□□□□ -1.09
ECHDC1-222ENST00000531967 PUS7Q96PZ0 661 aaKnown RBP8.24□□□□□ -1.09
ECHDC1-222ENST00000531967 APBB1O00213 710 aa8.23□□□□□ -1.09
ECHDC1-222ENST00000531967 ZC3H15Q8WU90 426 aaKnown RBP8.23□□□□□ -1.09
ECHDC1-222ENST00000531967 GTPBP6O43824 516 aaPredicted RBP8.21□□□□□ -1.09
ECHDC1-222ENST00000531967 RGS22Q8NE09 1264 aa8.21□□□□□ -1.09
ECHDC1-222ENST00000531967 NKX1-1Q15270 411 aaPredicted RBP8.2□□□□□ -1.1
ECHDC1-222ENST00000531967 SAMD1Q6SPF0 538 aaPredicted RBP8.19□□□□□ -1.1
ECHDC1-222ENST00000531967 MTMR7Q9Y216 660 aa8.16□□□□□ -1.1
ECHDC1-222ENST00000531967 MKRN4PQ13434 485 aaPredicted RBP8.16□□□□□ -1.1
ECHDC1-222ENST00000531967 ZNF219Q9P2Y4 722 aaPredicted RBP8.15□□□□□ -1.1
ECHDC1-222ENST00000531967 KCNV2Q8TDN2 545 aa8.15□□□□□ -1.11
ECHDC1-222ENST00000531967 RBM25P49756 843 aaKnown RBP8.13□□□□□ -1.11
ECHDC1-222ENST00000531967 ZNF428Q96B54 188 aa8.12□□□□□ -1.11
ECHDC1-222ENST00000531967 TRAIPQ9BWF2 469 aa8.12□□□□□ -1.11
ECHDC1-222ENST00000531967 CIZ1Q9ULV3 898 aaPredicted RBP8.12□□□□□ -1.11
ECHDC1-222ENST00000531967 CCDC82Q8N4S0 544 aa8.11□□□□□ -1.11
ECHDC1-222ENST00000531967 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.1□□□□□ -1.11
ECHDC1-222ENST00000531967 MKRN3Q13064 507 aaKnown RBP8.1□□□□□ -1.11
ECHDC1-222ENST00000531967 HNRNPUL2Q1KMD3 747 aaKnown RBP8.1□□□□□ -1.11
ECHDC1-222ENST00000531967 TMCO4Q5TGY1 634 aa8.1□□□□□ -1.11
ECHDC1-222ENST00000531967 IL27Q8NEV9 243 aa8.1□□□□□ -1.11
ECHDC1-222ENST00000531967 FOXD4L5Q5VV16 416 aaPredicted RBP8.09□□□□□ -1.11
ECHDC1-222ENST00000531967 FOXD4L4Q8WXT5 416 aaPredicted RBP8.09□□□□□ -1.11
ECHDC1-222ENST00000531967 AEBP1Q8IUX7 1158 aa8.08□□□□□ -1.12
ECHDC1-222ENST00000531967 MFAP1P55081 439 aaKnown RBP8.07□□□□□ -1.12
ECHDC1-222ENST00000531967 GPBP1L1Q9HC44 474 aaPredicted RBP8.07□□□□□ -1.12
ECHDC1-222ENST00000531967 ZMYND10O75800 440 aa8.05□□□□□ -1.12
ECHDC1-222ENST00000531967 RNF25Q96BH1 459 aaPredicted RBP8.05□□□□□ -1.12
ECHDC1-222ENST00000531967 WDR70Q9NW82 654 aa8.04□□□□□ -1.12
ECHDC1-222ENST00000531967 PLCD3Q8N3E9 789 aa8.03□□□□□ -1.12
ECHDC1-222ENST00000531967 TRIM41Q8WV44 630 aa8.03□□□□□ -1.12
ECHDC1-222ENST00000531967 E9PSI1 815 aa8.02□□□□□ -1.13
ECHDC1-222ENST00000531967 BRD2P25440 801 aaKnown RBP8.02□□□□□ -1.13
ECHDC1-222ENST00000531967 GZF1Q9H116 711 aaPredicted RBP8.01□□□□□ -1.13
ECHDC1-222ENST00000531967 DHX37Q8IY37 1157 aaKnown RBP8□□□□□ -1.13
ECHDC1-222ENST00000531967 USP35Q9P2H5 1018 aa7.99□□□□□ -1.13
ECHDC1-222ENST00000531967 DMRT2Q9Y5R5 561 aa7.98□□□□□ -1.13
ECHDC1-222ENST00000531967 FLIIQ13045 1269 aa7.98□□□□□ -1.13
ECHDC1-222ENST00000531967 KDM4CQ9H3R0 1056 aa7.98□□□□□ -1.13
ECHDC1-222ENST00000531967 TRAK2O60296 914 aa7.96□□□□□ -1.13
ECHDC1-222ENST00000531967 UBE2Q2Q8WVN8 375 aa7.96□□□□□ -1.13
ECHDC1-222ENST00000531967 BARGINQ6ZT62 677 aa7.96□□□□□ -1.14
ECHDC1-222ENST00000531967 TESPA1A2RU30 521 aaPredicted RBP7.95□□□□□ -1.14
ECHDC1-222ENST00000531967 STAG3Q9UJ98 1225 aa7.95□□□□□ -1.14
ECHDC1-222ENST00000531967 POLR3GLQ9BT43 218 aa7.94□□□□□ -1.14
ECHDC1-222ENST00000531967 A6NJR5 290 aa7.94□□□□□ -1.14
ECHDC1-222ENST00000531967 AK7Q96M32 723 aa7.94□□□□□ -1.14
ECHDC1-222ENST00000531967 RYDENQ9NUL5 291 aaKnown RBP7.94□□□□□ -1.14
ECHDC1-222ENST00000531967 STK25O00506 426 aa7.93□□□□□ -1.14
ECHDC1-222ENST00000531967 POLA2Q14181 598 aa7.93□□□□□ -1.14
ECHDC1-222ENST00000531967 FAM177A1Q8N128 213 aaPredicted RBP7.93□□□□□ -1.14
ECHDC1-222ENST00000531967 SEMA3EO15041 775 aa7.92□□□□□ -1.14
ECHDC1-222ENST00000531967 RSPH4AQ5TD94 716 aa7.92□□□□□ -1.14
ECHDC1-222ENST00000531967 ARHGEF1Q92888 912 aaKnown RBP7.92□□□□□ -1.14
ECHDC1-222ENST00000531967 MIER1Q8N108 512 aa7.91□□□□□ -1.14
ECHDC1-222ENST00000531967 CLUAP1Q96AJ1 413 aa7.91□□□□□ -1.14
ECHDC1-222ENST00000531967 CADPS2Q86UW7 1296 aa7.9□□□□□ -1.14
ECHDC1-222ENST00000531967 RIOK3O14730 519 aaKnown RBP7.9□□□□□ -1.15
ECHDC1-222ENST00000531967 U3KPZ7 1027 aaPredicted RBP7.9□□□□□ -1.15
ECHDC1-222ENST00000531967 RETREG2Q8NC44 543 aa7.89□□□□□ -1.15
ECHDC1-222ENST00000531967 FBXW7Q969H0 707 aa7.89□□□□□ -1.15
ECHDC1-222ENST00000531967 ONECUT3O60422 494 aaPredicted RBP7.88□□□□□ -1.15
ECHDC1-222ENST00000531967 IRF5Q13568 498 aa7.87□□□□□ -1.15
ECHDC1-222ENST00000531967 ZNF692Q9BU19 519 aaPredicted RBP7.87□□□□□ -1.15
ECHDC1-222ENST00000531967 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.86□□□□□ -1.158e-8■■■■□ 21.5
ECHDC1-222ENST00000531967 FAM9AQ8IZU1 332 aaPredicted RBP7.86□□□□□ -1.15
ECHDC1-222ENST00000531967 ZNF316A6NFI3 1004 aaPredicted RBP7.85□□□□□ -1.15
ECHDC1-222ENST00000531967 SERPINA10Q9UK55 444 aa7.84□□□□□ -1.15
ECHDC1-222ENST00000531967 PDE4DQ08499 809 aa7.84□□□□□ -1.15
ECHDC1-222ENST00000531967 CCDC97Q96F63 343 aaPredicted RBP7.84□□□□□ -1.15
ECHDC1-222ENST00000531967 FAM117AQ9C073 453 aa7.84□□□□□ -1.15
ECHDC1-222ENST00000531967 ZNF777Q9ULD5 760 aaPredicted RBP7.83□□□□□ -1.16
ECHDC1-222ENST00000531967 ZBTB47Q9UFB7 747 aaPredicted RBP7.82□□□□□ -1.16
ECHDC1-222ENST00000531967 TRIM66O15016 1216 aa7.81□□□□□ -1.16
ECHDC1-222ENST00000531967 VGFO15240 615 aaPredicted RBP7.81□□□□□ -1.16
ECHDC1-222ENST00000531967 KRI1Q8N9T8 703 aaKnown RBP7.81□□□□□ -1.16
ECHDC1-222ENST00000531967 AMOTL2Q9Y2J4 779 aa7.81□□□□□ -1.16
ECHDC1-222ENST00000531967 PPM1GO15355 546 aaPredicted RBP7.8□□□□□ -1.16
ECHDC1-222ENST00000531967 SMYD5Q6GMV2 418 aa7.8□□□□□ -1.16
ECHDC1-222ENST00000531967 STK24Q9Y6E0 443 aa7.79□□□□□ -1.16
ECHDC1-222ENST00000531967 CCDC125Q86Z20 511 aa7.79□□□□□ -1.16
ECHDC1-222ENST00000531967 BCL11BQ9C0K0 894 aaPredicted RBP7.79□□□□□ -1.16
ECHDC1-222ENST00000531967 PLEKHG3A1L390 1219 aa7.78□□□□□ -1.16
ECHDC1-222ENST00000531967 TAF7LQ5H9L4 462 aa7.78□□□□□ -1.16
ECHDC1-222ENST00000531967 GSE1Q14687 1217 aa7.78□□□□□ -1.16
ECHDC1-222ENST00000531967 PDE4CQ08493 712 aa7.77□□□□□ -1.17
ECHDC1-222ENST00000531967 E2F4Q16254 413 aa7.77□□□□□ -1.17
ECHDC1-222ENST00000531967 MSH5O43196 834 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms