RNA–Protein interactions for RNA: ENST00000529919.5

CTNND1-222, Transcript of catenin delta 1, human

TSL 5 BASIC

Gene CTNND1, Length 4,780 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-222	ENST00000529919	CCDC136	Q96JN2	1154 aa		10.77	□□□□□ -0.69
CTNND1-222	ENST00000529919	DCAF1	Q9Y4B6	1507 aa		10.76	□□□□□ -0.69
CTNND1-222	ENST00000529919	KIF27	Q86VH2	1401 aa		10.76	□□□□□ -0.69
CTNND1-222	ENST00000529919	SALL2	Q9Y467	1007 aa	Predicted RBP	10.74	□□□□□ -0.69
CTNND1-222	ENST00000529919	SENP3	Q9H4L4	574 aa	Predicted RBP	10.73	□□□□□ -0.69
CTNND1-222	ENST00000529919	PPP1R15A	O75807	674 aa	Predicted RBP	10.73	□□□□□ -0.69
CTNND1-222	ENST00000529919	C14orf37	Q86TY3	774 aa		10.72	□□□□□ -0.69
CTNND1-222	ENST00000529919	CFDP1	Q9UEE9	299 aa	Predicted RBP	10.69	□□□□□ -0.7
CTNND1-222	ENST00000529919	TONSL	Q96HA7	1378 aa		10.68	□□□□□ -0.7
CTNND1-222	ENST00000529919	IRX6	P78412	446 aa	Predicted RBP	10.68	□□□□□ -0.7
CTNND1-222	ENST00000529919	SMARCA2	P51531	1590 aa		10.68	□□□□□ -0.7
CTNND1-222	ENST00000529919	TDRD9	Q8NDG6	1382 aa	Known RBP	10.68	□□□□□ -0.7
CTNND1-222	ENST00000529919	MIER1	Q8N108	512 aa		10.68	□□□□□ -0.7
CTNND1-222	ENST00000529919	MLEC	Q14165	292 aa		10.67	□□□□□ -0.7
CTNND1-222	ENST00000529919	TMC1	Q8TDI8	760 aa		10.66	□□□□□ -0.7
CTNND1-222	ENST00000529919	CLIP1	P30622	1438 aa		10.66	□□□□□ -0.7
CTNND1-222	ENST00000529919	CUX2	O14529	1486 aa		10.66	□□□□□ -0.7
CTNND1-222	ENST00000529919	PLEKHG5	O94827	1062 aa		10.65	□□□□□ -0.7
CTNND1-222	ENST00000529919	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	10.65	□□□□□ -0.7
CTNND1-222	ENST00000529919	CADPS	Q9ULU8	1353 aa		10.65	□□□□□ -0.7
CTNND1-222	ENST00000529919	CYB5RL	Q6IPT4	315 aa		10.64	□□□□□ -0.71
CTNND1-222	ENST00000529919	SOGA1	O94964	1423 aa		10.63	□□□□□ -0.71
CTNND1-222	ENST00000529919	MRS2	Q9HD23	443 aa		10.63	□□□□□ -0.71
CTNND1-222	ENST00000529919	CARMIL1	Q5VZK9	1371 aa		10.63	□□□□□ -0.71
CTNND1-222	ENST00000529919	RRP7BP	Q9NSQ0	103 aa		10.63	□□□□□ -0.71
CTNND1-222	ENST00000529919	OSCAR	Q8IYS5	282 aa		10.62	□□□□□ -0.71
CTNND1-222	ENST00000529919	KDM2A	Q9Y2K7	1162 aa		10.62	□□□□□ -0.71
CTNND1-222	ENST00000529919	ANP32E	Q9BTT0	268 aa		10.62	□□□□□ -0.71
CTNND1-222	ENST00000529919	EEA1	Q15075	1411 aa		10.61	□□□□□ -0.71
CTNND1-222	ENST00000529919		A0A0G2JS52	829 aa		10.61	□□□□□ -0.71
CTNND1-222	ENST00000529919	MROH2B	Q7Z745	1585 aa		10.61	□□□□□ -0.71
CTNND1-222	ENST00000529919	EIF4G1	Q04637	1599 aa	Known RBP	10.6	□□□□□ -0.71
CTNND1-222	ENST00000529919	HAP1	P54257	671 aa	Predicted RBP	10.59	□□□□□ -0.71
CTNND1-222	ENST00000529919	CARMIL2	Q6F5E8	1435 aa		10.58	□□□□□ -0.72
CTNND1-222	ENST00000529919	HIRIP3	Q9BW71	556 aa	Predicted RBP	10.57	□□□□□ -0.72
CTNND1-222	ENST00000529919	MYO15B	Q96JP2	1530 aa		10.57	□□□□□ -0.72
CTNND1-222	ENST00000529919	TRIM44	Q96DX7	344 aa	Predicted RBP	10.57	□□□□□ -0.72
CTNND1-222	ENST00000529919	GOLGA3	Q08378	1498 aa		10.56	□□□□□ -0.72
CTNND1-222	ENST00000529919	ATAD2B	Q9ULI0	1458 aa		10.56	□□□□□ -0.72
CTNND1-222	ENST00000529919	RGL3	Q3MIN7	710 aa		10.56	□□□□□ -0.72
CTNND1-222	ENST00000529919	CCDC88B	A6NC98	1476 aa		10.55	□□□□□ -0.72
CTNND1-222	ENST00000529919	ZBTB7C	A1YPR0	619 aa		10.55	□□□□□ -0.72
CTNND1-222	ENST00000529919	CEP164	Q9UPV0	1460 aa		10.54	□□□□□ -0.72
CTNND1-222	ENST00000529919	WDR43	Q15061	677 aa	Known RBP eCLIP	10.53	□□□□□ -0.72	3e-9	■■■□□ 15.6
CTNND1-222	ENST00000529919	RTN4	Q9NQC3	1192 aa	Known RBP	10.53	□□□□□ -0.72
CTNND1-222	ENST00000529919	JPH4	Q96JJ6	628 aa		10.53	□□□□□ -0.72
CTNND1-222	ENST00000529919	GGT6	Q6P531	493 aa		10.52	□□□□□ -0.72
CTNND1-222	ENST00000529919	ERICH6B	Q5W0A0	696 aa		10.52	□□□□□ -0.73
CTNND1-222	ENST00000529919	BECN1	Q14457	450 aa		10.51	□□□□□ -0.73
CTNND1-222	ENST00000529919	DDRGK1	Q96HY6	314 aa		10.51	□□□□□ -0.73
CTNND1-222	ENST00000529919	CCNB3	Q8WWL7	1395 aa		10.51	□□□□□ -0.73
CTNND1-222	ENST00000529919	LMOD2	Q6P5Q4	547 aa		10.5	□□□□□ -0.73
CTNND1-222	ENST00000529919	AEBP2	Q6ZN18	517 aa	Predicted RBP	10.5	□□□□□ -0.73
CTNND1-222	ENST00000529919	TNNT2	P45379	298 aa	Predicted RBP	10.49	□□□□□ -0.73
CTNND1-222	ENST00000529919	EFCAB2	Q5VUJ9	269 aa		10.48	□□□□□ -0.73
CTNND1-222	ENST00000529919	SUPT16H	Q9Y5B9	1047 aa	Known RBP	10.48	□□□□□ -0.73
CTNND1-222	ENST00000529919	SENP3-EIF4A1	A0A087X0R7	540 aa		10.47	□□□□□ -0.73
CTNND1-222	ENST00000529919	FANCD2	Q9BXW9	1451 aa		10.47	□□□□□ -0.73
CTNND1-222	ENST00000529919	GOLGA6L22	H0YM25	854 aa		10.47	□□□□□ -0.73
CTNND1-222	ENST00000529919	PPM1G	O15355	546 aa	Predicted RBP	10.47	□□□□□ -0.73
CTNND1-222	ENST00000529919	CEP162	Q5TB80	1403 aa		10.46	□□□□□ -0.73
CTNND1-222	ENST00000529919	HDGF	P51858	240 aa	Known RBP	10.46	□□□□□ -0.74
CTNND1-222	ENST00000529919	EIF4G2	P78344	907 aa	Known RBP eCLIP	10.45	□□□□□ -0.74
CTNND1-222	ENST00000529919	LAS1L	Q9Y4W2	734 aa	Known RBP	10.45	□□□□□ -0.74
CTNND1-222	ENST00000529919	NAP1L5	Q96NT1	182 aa	Predicted RBP	10.45	□□□□□ -0.74
CTNND1-222	ENST00000529919	NCL	P19338	710 aa	Known RBP	10.44	□□□□□ -0.74
CTNND1-222	ENST00000529919	MYH16	Q9H6N6	1097 aa		10.44	□□□□□ -0.74
CTNND1-222	ENST00000529919	FHAD1	B1AJZ9	1412 aa		10.44	□□□□□ -0.74
CTNND1-222	ENST00000529919	PTMA	P06454	111 aa	Known RBP	10.44	□□□□□ -0.74
CTNND1-222	ENST00000529919	DNTTIP2	Q5QJE6	756 aa	Known RBP	10.44	□□□□□ -0.74
CTNND1-222	ENST00000529919	POGK	Q9P215	609 aa		10.44	□□□□□ -0.74
CTNND1-222	ENST00000529919	DNAJC5B	Q9UF47	199 aa		10.44	□□□□□ -0.74
CTNND1-222	ENST00000529919	TNIK	Q9UKE5	1360 aa		10.42	□□□□□ -0.74
CTNND1-222	ENST00000529919	KANK1	Q14678	1352 aa		10.42	□□□□□ -0.74
CTNND1-222	ENST00000529919	NOP58	Q9Y2X3	529 aa	Known RBP	10.4	□□□□□ -0.74
CTNND1-222	ENST00000529919	TOP2A	P11388	1531 aa	Known RBP	10.39	□□□□□ -0.75
CTNND1-222	ENST00000529919	CDK11B	P21127	795 aa	Known RBP	10.39	□□□□□ -0.75
CTNND1-222	ENST00000529919	FAM69C	Q0P6D2	419 aa		10.38	□□□□□ -0.75
CTNND1-222	ENST00000529919	PPP4R2	Q9NY27	417 aa		10.38	□□□□□ -0.75
CTNND1-222	ENST00000529919	WIZ	O95785	1651 aa		10.38	□□□□□ -0.75
CTNND1-222	ENST00000529919	PTPRG	P23470	1445 aa		10.38	□□□□□ -0.75
CTNND1-222	ENST00000529919	ABCC8	Q09428	1581 aa		10.38	□□□□□ -0.75
CTNND1-222	ENST00000529919	SMARCA4	P51532	1647 aa		10.37	□□□□□ -0.75
CTNND1-222	ENST00000529919	RGS3	P49796	1198 aa		10.37	□□□□□ -0.75
CTNND1-222	ENST00000529919	TPRN	Q4KMQ1	711 aa		10.36	□□□□□ -0.75
CTNND1-222	ENST00000529919	KIF3B	O15066	747 aa		10.36	□□□□□ -0.75
CTNND1-222	ENST00000529919	NCAPD3	P42695	1498 aa		10.36	□□□□□ -0.75
CTNND1-222	ENST00000529919	B4GALNT3	Q6L9W6	998 aa		10.35	□□□□□ -0.75
CTNND1-222	ENST00000529919	DEK	P35659	375 aa	Known RBP	10.35	□□□□□ -0.75
CTNND1-222	ENST00000529919	PLCB2	Q00722	1185 aa		10.34	□□□□□ -0.75
CTNND1-222	ENST00000529919	ZRSR1	Q15695	479 aa	Known RBP	10.33	□□□□□ -0.76
CTNND1-222	ENST00000529919	SPAG9	O60271	1321 aa	Known RBP	10.33	□□□□□ -0.76
CTNND1-222	ENST00000529919	FMN1	Q68DA7	1419 aa		10.32	□□□□□ -0.76
CTNND1-222	ENST00000529919	HNRNPM	P52272	730 aa	Known RBP eCLIP	10.31	□□□□□ -0.76	5e-7	■■■■□ 21
CTNND1-222	ENST00000529919	CDCA8	Q53HL2	280 aa		10.31	□□□□□ -0.76
CTNND1-222	ENST00000529919	EID1	Q9Y6B2	187 aa		10.31	□□□□□ -0.76
CTNND1-222	ENST00000529919	WASHC2C	Q9Y4E1	1318 aa		10.31	□□□□□ -0.76
CTNND1-222	ENST00000529919	SAFB2	Q14151	953 aa	Known RBP eCLIP	10.31	□□□□□ -0.76
CTNND1-222	ENST00000529919	CARD11	Q9BXL7	1154 aa		10.31	□□□□□ -0.76
CTNND1-222	ENST00000529919	RBM19	Q9Y4C8	960 aa	Known RBP	10.31	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms