RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 ZBTB47Q9UFB7 747 aaPredicted RBP8.43□□□□□ -1.06
CD44-229ENST00000528672 PELP1Q8IZL8 1130 aaKnown RBP8.42□□□□□ -1.06
CD44-229ENST00000528672 VASPP50552 380 aaPredicted RBP8.41□□□□□ -1.06
CD44-229ENST00000528672 ASTLQ6HA08 431 aaPredicted RBP8.37□□□□□ -1.07
CD44-229ENST00000528672 MIER1Q8N108 512 aa8.37□□□□□ -1.07
CD44-229ENST00000528672 PLCD3Q8N3E9 789 aa8.37□□□□□ -1.07
CD44-229ENST00000528672 POTEMA6NI47 508 aa8.35□□□□□ -1.07
CD44-229ENST00000528672 C7P10643 843 aa8.35□□□□□ -1.07
CD44-229ENST00000528672 ATMINO43313 823 aaPredicted RBP8.34□□□□□ -1.07
CD44-229ENST00000528672 MS4A3Q96HJ5 214 aa8.34□□□□□ -1.07
CD44-229ENST00000528672 METRNQ9UJH8 293 aa8.34□□□□□ -1.07
CD44-229ENST00000528672 POTEGQ6S5H5 508 aa8.33□□□□□ -1.08
CD44-229ENST00000528672 IFNLR1Q8IU57 520 aaPredicted RBP8.33□□□□□ -1.08
CD44-229ENST00000528672 SLC39A7Q92504 469 aa8.33□□□□□ -1.08
CD44-229ENST00000528672 POTEJP0CG39 1038 aa8.32□□□□□ -1.08
CD44-229ENST00000528672 MAMSTRQ6ZN01 415 aa8.29□□□□□ -1.08
CD44-229ENST00000528672 TSPYL2Q9H2G4 693 aaPredicted RBP8.28□□□□□ -1.08
CD44-229ENST00000528672 PCDH10Q9P2E7 1040 aa8.27□□□□□ -1.09
CD44-229ENST00000528672 CCDC61Q9Y6R9 512 aa8.26□□□□□ -1.09
CD44-229ENST00000528672 ATN1P54259 1190 aaPredicted RBP8.25□□□□□ -1.09
CD44-229ENST00000528672 AMER1Q5JTC6 1135 aaPredicted RBP8.25□□□□□ -1.09
CD44-229ENST00000528672 KIF12Q96FN5 646 aa8.24□□□□□ -1.09
CD44-229ENST00000528672 KLHL34Q8N239 644 aa8.22□□□□□ -1.09
CD44-229ENST00000528672 NUBP1P53384 320 aa8.21□□□□□ -1.1
CD44-229ENST00000528672 SPOCK2Q92563 424 aa8.21□□□□□ -1.1
CD44-229ENST00000528672 LCE2DQ5TA82 110 aaPredicted RBP8.2□□□□□ -1.1
CD44-229ENST00000528672 SCUBE2Q9NQ36 999 aa8.2□□□□□ -1.1
CD44-229ENST00000528672 BMP2KQ9NSY1 1161 aaPredicted RBP8.2□□□□□ -1.1
CD44-229ENST00000528672 FAM212AQ96EL1 285 aa8.19□□□□□ -1.1
CD44-229ENST00000528672 FAM163AQ96GL9 167 aaPredicted RBP8.19□□□□□ -1.1
CD44-229ENST00000528672 POTEFA5A3E0 1075 aa8.18□□□□□ -1.1
CD44-229ENST00000528672 TRPC6Q9Y210 931 aa8.18□□□□□ -1.1
CD44-229ENST00000528672 MAP3K13O43283 966 aa8.17□□□□□ -1.1
CD44-229ENST00000528672 GSE1Q14687 1217 aa8.17□□□□□ -1.1
CD44-229ENST00000528672 TIE1P35590 1138 aa8.16□□□□□ -1.1
CD44-229ENST00000528672 RASEFQ8IZ41 740 aa8.16□□□□□ -1.1
CD44-229ENST00000528672 PKD2Q13563 968 aa8.13□□□□□ -1.11
CD44-229ENST00000528672 TRIM41Q8WV44 630 aa8.13□□□□□ -1.11
CD44-229ENST00000528672 TTLL13PA6NNM8 815 aa8.11□□□□□ -1.11
CD44-229ENST00000528672 COLQQ9Y215 455 aaPredicted RBP8.11□□□□□ -1.11
CD44-229ENST00000528672 SEC24BO95487 1268 aa8.1□□□□□ -1.11
CD44-229ENST00000528672 SGIP1Q9BQI5 828 aa8.1□□□□□ -1.11
CD44-229ENST00000528672 CHRM1P11229 460 aaPredicted RBP8.09□□□□□ -1.11
CD44-229ENST00000528672 DCAF8Q5TAQ9 597 aa8.07□□□□□ -1.12
CD44-229ENST00000528672 IER5LQ5T953 404 aa8.06□□□□□ -1.12
CD44-229ENST00000528672 TRIM35Q9UPQ4 493 aa8.05□□□□□ -1.12
CD44-229ENST00000528672 PCDHB13Q9Y5F0 798 aa8.04□□□□□ -1.12
CD44-229ENST00000528672 CDAN1Q8IWY9 1227 aa8.01□□□□□ -1.13
CD44-229ENST00000528672 CIZ1Q9ULV3 898 aaPredicted RBP8.01□□□□□ -1.13
CD44-229ENST00000528672 IFNL1Q8IU54 200 aa8□□□□□ -1.13
CD44-229ENST00000528672 RGL2O15211 777 aa7.99□□□□□ -1.13
CD44-229ENST00000528672 DCAF8L2P0C7V8 631 aa7.99□□□□□ -1.13
CD44-229ENST00000528672 ZNF467Q7Z7K2 595 aaPredicted RBP7.99□□□□□ -1.13
CD44-229ENST00000528672 SLAIN1Q8ND83 568 aa7.98□□□□□ -1.13
CD44-229ENST00000528672 TMEM106CQ9BVX2 250 aa7.97□□□□□ -1.13
CD44-229ENST00000528672 ST18O60284 1047 aa7.96□□□□□ -1.14
CD44-229ENST00000528672 PYGBP11216 843 aa7.96□□□□□ -1.14
CD44-229ENST00000528672 SLC24A1O60721 1099 aa7.94□□□□□ -1.14
CD44-229ENST00000528672 ECM2O94769 699 aaPredicted RBP7.94□□□□□ -1.14
CD44-229ENST00000528672 PLCG2P16885 1265 aa7.94□□□□□ -1.14
CD44-229ENST00000528672 IRX5P78411 483 aaPredicted RBP7.94□□□□□ -1.14
CD44-229ENST00000528672 TAOK2Q9UL54 1235 aa7.94□□□□□ -1.14
CD44-229ENST00000528672 RNF25Q96BH1 459 aaPredicted RBP7.92□□□□□ -1.14
CD44-229ENST00000528672 RIOK3O14730 519 aaKnown RBP7.9□□□□□ -1.14
CD44-229ENST00000528672 OCEL1Q9H607 264 aa7.9□□□□□ -1.14
CD44-229ENST00000528672 PDAP1Q13442 181 aaKnown RBP7.88□□□□□ -1.15
CD44-229ENST00000528672 TMEM121BQ9BXQ6 578 aaPredicted RBP7.88□□□□□ -1.15
CD44-229ENST00000528672 VGFO15240 615 aaPredicted RBP7.87□□□□□ -1.15
CD44-229ENST00000528672 SNPHO15079 494 aa7.86□□□□□ -1.15
CD44-229ENST00000528672 PCDHB8Q9UN66 801 aa7.85□□□□□ -1.15
CD44-229ENST00000528672 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.84□□□□□ -1.15
CD44-229ENST00000528672 PSEN1P49768 467 aa7.83□□□□□ -1.16
CD44-229ENST00000528672 MMRN1Q13201 1228 aa7.83□□□□□ -1.16
CD44-229ENST00000528672 SPNS2Q8IVW8 549 aa7.83□□□□□ -1.16
CD44-229ENST00000528672 MARVELD3Q96A59 401 aa7.79□□□□□ -1.16
CD44-229ENST00000528672 CHGAP10645 457 aaKnown RBP7.77□□□□□ -1.17
CD44-229ENST00000528672 PDCD7Q8N8D1 485 aaKnown RBP7.77□□□□□ -1.17
CD44-229ENST00000528672 DNAJC5Q9H3Z4 198 aa7.77□□□□□ -1.17
CD44-229ENST00000528672 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.76□□□□□ -1.17
CD44-229ENST00000528672 ZFP91Q96JP5 570 aaPredicted RBP7.76□□□□□ -1.17
CD44-229ENST00000528672 PLCB2Q00722 1185 aa7.75□□□□□ -1.17
CD44-229ENST00000528672 GOLGA2Q08379 1002 aa7.75□□□□□ -1.17
CD44-229ENST00000528672 HS6ST3Q8IZP7 471 aa7.75□□□□□ -1.17
CD44-229ENST00000528672 L3MBTL3Q96JM7 780 aaPredicted RBP7.75□□□□□ -1.17
CD44-229ENST00000528672 NKX1-1Q15270 411 aaPredicted RBP7.74□□□□□ -1.17
CD44-229ENST00000528672 C3orf67Q6ZVT6 689 aa7.74□□□□□ -1.17
CD44-229ENST00000528672 MKRN3Q13064 507 aaKnown RBP7.73□□□□□ -1.17
CD44-229ENST00000528672 ILDR1Q86SU0 546 aaPredicted RBP7.73□□□□□ -1.17
CD44-229ENST00000528672 CFAP44Q96MT7 982 aa7.73□□□□□ -1.17
CD44-229ENST00000528672 STK25O00506 426 aa7.72□□□□□ -1.17
CD44-229ENST00000528672 HAP1P54257 671 aaPredicted RBP7.72□□□□□ -1.17
CD44-229ENST00000528672 PAXIP1Q6ZW49 1069 aaPredicted RBP7.72□□□□□ -1.17
CD44-229ENST00000528672 BCL11BQ9C0K0 894 aaPredicted RBP7.72□□□□□ -1.17
CD44-229ENST00000528672 SOX12O15370 315 aa7.71□□□□□ -1.18
CD44-229ENST00000528672 EMP3P54852 163 aa7.71□□□□□ -1.18
CD44-229ENST00000528672 CABP2Q9NPB3 220 aa7.7□□□□□ -1.18
CD44-229ENST00000528672 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.7□□□□□ -1.18
CD44-229ENST00000528672 POTEB3A0JP26 581 aa7.68□□□□□ -1.18
CD44-229ENST00000528672 POTEBQ6S5H4 581 aa7.68□□□□□ -1.18
CD44-229ENST00000528672 RYDENQ9NUL5 291 aaKnown RBP7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms