RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 SLC39A7Q92504 469 aa11.82□□□□□ -0.52
USP48-211ENST00000526044 TSPYL2Q9H2G4 693 aaPredicted RBP11.82□□□□□ -0.52
USP48-211ENST00000526044 C7P10643 843 aa11.8□□□□□ -0.52
USP48-211ENST00000526044 ASTLQ6HA08 431 aaPredicted RBP11.8□□□□□ -0.52
USP48-211ENST00000526044 PELP1Q8IZL8 1130 aaKnown RBP11.8□□□□□ -0.52
USP48-211ENST00000526044 METRNQ9UJH8 293 aa11.79□□□□□ -0.52
USP48-211ENST00000526044 ATMINO43313 823 aaPredicted RBP11.77□□□□□ -0.53
USP48-211ENST00000526044 MAMSTRQ6ZN01 415 aa11.75□□□□□ -0.53
USP48-211ENST00000526044 POTEMA6NI47 508 aa11.72□□□□□ -0.53
USP48-211ENST00000526044 MIER1Q8N108 512 aa11.71□□□□□ -0.53
USP48-211ENST00000526044 CCDC61Q9Y6R9 512 aa11.71□□□□□ -0.53
USP48-211ENST00000526044 VASPP50552 380 aaPredicted RBP11.68□□□□□ -0.54
USP48-211ENST00000526044 SCUBE2Q9NQ36 999 aa11.68□□□□□ -0.54
USP48-211ENST00000526044 POTEGQ6S5H5 508 aa11.67□□□□□ -0.54
USP48-211ENST00000526044 KIF12Q96FN5 646 aa11.67□□□□□ -0.54
USP48-211ENST00000526044 ATN1P54259 1190 aaPredicted RBP11.65□□□□□ -0.54
USP48-211ENST00000526044 PLCD3Q8N3E9 789 aa11.65□□□□□ -0.54
USP48-211ENST00000526044 PCDH10Q9P2E7 1040 aa11.62□□□□□ -0.55
USP48-211ENST00000526044 MAP3K13O43283 966 aa11.6□□□□□ -0.55
USP48-211ENST00000526044 TIE1P35590 1138 aa11.6□□□□□ -0.55
USP48-211ENST00000526044 BMP2KQ9NSY1 1161 aaPredicted RBP11.59□□□□□ -0.55
USP48-211ENST00000526044 POTEJP0CG39 1038 aa11.58□□□□□ -0.56
USP48-211ENST00000526044 ZBTB47Q9UFB7 747 aaPredicted RBP11.58□□□□□ -0.56
USP48-211ENST00000526044 RASEFQ8IZ41 740 aa11.57□□□□□ -0.56
USP48-211ENST00000526044 SEC24BO95487 1268 aa11.56□□□□□ -0.56
USP48-211ENST00000526044 FAM163AQ96GL9 167 aaPredicted RBP11.55□□□□□ -0.56
USP48-211ENST00000526044 IFNLR1Q8IU57 520 aaPredicted RBP11.52□□□□□ -0.57
USP48-211ENST00000526044 KLHL34Q8N239 644 aa11.52□□□□□ -0.57
USP48-211ENST00000526044 SGIP1Q9BQI5 828 aa11.52□□□□□ -0.57
USP48-211ENST00000526044 TRPC6Q9Y210 931 aa11.52□□□□□ -0.57
USP48-211ENST00000526044 TTLL13PA6NNM8 815 aa11.49□□□□□ -0.57
USP48-211ENST00000526044 PCDHB13Q9Y5F0 798 aa11.49□□□□□ -0.57
USP48-211ENST00000526044 POTEFA5A3E0 1075 aa11.47□□□□□ -0.57
USP48-211ENST00000526044 IER5LQ5T953 404 aa11.46□□□□□ -0.57
USP48-211ENST00000526044 FAM212AQ96EL1 285 aa11.44□□□□□ -0.58
USP48-211ENST00000526044 TRIM35Q9UPQ4 493 aa11.44□□□□□ -0.58
USP48-211ENST00000526044 SPOCK2Q92563 424 aa11.42□□□□□ -0.58
USP48-211ENST00000526044 COLQQ9Y215 455 aaPredicted RBP11.41□□□□□ -0.58
USP48-211ENST00000526044 NUBP1P53384 320 aa11.4□□□□□ -0.58
USP48-211ENST00000526044 LCE2DQ5TA82 110 aaPredicted RBP11.39□□□□□ -0.59
USP48-211ENST00000526044 IFNL1Q8IU54 200 aa11.36□□□□□ -0.59
USP48-211ENST00000526044 TMEM106CQ9BVX2 250 aa11.36□□□□□ -0.59
USP48-211ENST00000526044 PLCG2P16885 1265 aa11.35□□□□□ -0.59
USP48-211ENST00000526044 SLAIN1Q8ND83 568 aa11.33□□□□□ -0.6
USP48-211ENST00000526044 DCAF8Q5TAQ9 597 aa11.31□□□□□ -0.6
USP48-211ENST00000526044 CDAN1Q8IWY9 1227 aa11.27□□□□□ -0.61
USP48-211ENST00000526044 GSE1Q14687 1217 aa11.25□□□□□ -0.61
USP48-211ENST00000526044 OCEL1Q9H607 264 aa11.24□□□□□ -0.61
USP48-211ENST00000526044 PYGBP11216 843 aa11.23□□□□□ -0.61
USP48-211ENST00000526044 CIZ1Q9ULV3 898 aaPredicted RBP11.23□□□□□ -0.61
USP48-211ENST00000526044 IRX5P78411 483 aaPredicted RBP11.22□□□□□ -0.61
USP48-211ENST00000526044 ST18O60284 1047 aa11.21□□□□□ -0.61
USP48-211ENST00000526044 SNPHO15079 494 aa11.2□□□□□ -0.62
USP48-211ENST00000526044 AMER1Q5JTC6 1135 aaPredicted RBP11.2□□□□□ -0.62
USP48-211ENST00000526044 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.19□□□□□ -0.62
USP48-211ENST00000526044 GOLGA2Q08379 1002 aa11.16□□□□□ -0.62
USP48-211ENST00000526044 PCDHB8Q9UN66 801 aa11.15□□□□□ -0.62
USP48-211ENST00000526044 TRIM41Q8WV44 630 aa11.14□□□□□ -0.63
USP48-211ENST00000526044 TMEM121BQ9BXQ6 578 aaPredicted RBP11.14□□□□□ -0.63
USP48-211ENST00000526044 PKD2Q13563 968 aa11.13□□□□□ -0.63
USP48-211ENST00000526044 ZNF467Q7Z7K2 595 aaPredicted RBP11.13□□□□□ -0.63
USP48-211ENST00000526044 RTN4Q9NQC3 1192 aaKnown RBP11.13□□□□□ -0.63
USP48-211ENST00000526044 MKRN3Q13064 507 aaKnown RBP11.11□□□□□ -0.63
USP48-211ENST00000526044 CHRM1P11229 460 aaPredicted RBP11.09□□□□□ -0.63
USP48-211ENST00000526044 C3orf67Q6ZVT6 689 aa11.09□□□□□ -0.63
USP48-211ENST00000526044 ECM2O94769 699 aaPredicted RBP11.08□□□□□ -0.64
USP48-211ENST00000526044 L3MBTL3Q96JM7 780 aaPredicted RBP11.08□□□□□ -0.64
USP48-211ENST00000526044 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.01□□□□□ -0.653e-12■■■■□ 21.3
USP48-211ENST00000526044 PSEN1P49768 467 aa11□□□□□ -0.65
USP48-211ENST00000526044 MARVELD3Q96A59 401 aa11□□□□□ -0.65
USP48-211ENST00000526044 PDCD7Q8N8D1 485 aaKnown RBP10.99□□□□□ -0.65
USP48-211ENST00000526044 G3V3G9 751 aa10.97□□□□□ -0.65
USP48-211ENST00000526044 MMRN1Q13201 1228 aa10.97□□□□□ -0.65
USP48-211ENST00000526044 SPNS2Q8IVW8 549 aa10.97□□□□□ -0.65
USP48-211ENST00000526044 EMP3P54852 163 aa10.96□□□□□ -0.65
USP48-211ENST00000526044 RGL2O15211 777 aa10.95□□□□□ -0.66
USP48-211ENST00000526044 RIOK3O14730 519 aaKnown RBP10.93□□□□□ -0.66
USP48-211ENST00000526044 PDAP1Q13442 181 aaKnown RBP10.93□□□□□ -0.66
USP48-211ENST00000526044 RNF25Q96BH1 459 aaPredicted RBP10.93□□□□□ -0.66
USP48-211ENST00000526044 TAOK2Q9UL54 1235 aa10.91□□□□□ -0.66
USP48-211ENST00000526044 FAM205CA6NFA0 338 aa10.87□□□□□ -0.67
USP48-211ENST00000526044 VGFO15240 615 aaPredicted RBP10.87□□□□□ -0.67
USP48-211ENST00000526044 DCAF8L2P0C7V8 631 aa10.86□□□□□ -0.67
USP48-211ENST00000526044 CABP2Q9NPB3 220 aa10.86□□□□□ -0.67
USP48-211ENST00000526044 HS3ST6Q96QI5 342 aa10.85□□□□□ -0.67
USP48-211ENST00000526044 BOLA1Q9Y3E2 137 aa10.84□□□□□ -0.67
USP48-211ENST00000526044 ILDR1Q86SU0 546 aaPredicted RBP10.82□□□□□ -0.68
USP48-211ENST00000526044 DPY19L2Q6NUT2 758 aa10.81□□□□□ -0.68
USP48-211ENST00000526044 ZNF710Q8N1W2 664 aa10.81□□□□□ -0.68
USP48-211ENST00000526044 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.8□□□□□ -0.68
USP48-211ENST00000526044 ZFP91Q96JP5 570 aaPredicted RBP10.8□□□□□ -0.68
USP48-211ENST00000526044 DOK7Q18PE1 504 aa10.77□□□□□ -0.69
USP48-211ENST00000526044 STK25O00506 426 aa10.76□□□□□ -0.69
USP48-211ENST00000526044 CHGAP10645 457 aaKnown RBP10.76□□□□□ -0.69
USP48-211ENST00000526044 KRTAP3-3Q9BYR6 98 aa10.76□□□□□ -0.69
USP48-211ENST00000526044 KRTAP3-2Q9BYR7 98 aa10.76□□□□□ -0.69
USP48-211ENST00000526044 RIMBP2O15034 1052 aa10.75□□□□□ -0.69
USP48-211ENST00000526044 POTEB3A0JP26 581 aa10.74□□□□□ -0.69
USP48-211ENST00000526044 POTEBQ6S5H4 581 aa10.74□□□□□ -0.69
USP48-211ENST00000526044 BCL11BQ9C0K0 894 aaPredicted RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms