RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 GALR2O43603 387 aaPredicted RBP15.78■□□□□ 0.12
SKP1-213ENST00000524288 FAM212AQ96EL1 285 aa15.78■□□□□ 0.12
SKP1-213ENST00000524288 DCBLD2Q96PD2 775 aa15.77■□□□□ 0.12
SKP1-213ENST00000524288 KLHL34Q8N239 644 aa15.75■□□□□ 0.11
SKP1-213ENST00000524288 KIF12Q96FN5 646 aa15.71■□□□□ 0.11
SKP1-213ENST00000524288 POTEIP0CG38 1075 aa15.7■□□□□ 0.1
SKP1-213ENST00000524288 MS4A3Q96HJ5 214 aa15.7■□□□□ 0.1
SKP1-213ENST00000524288 IFNLR1Q8IU57 520 aaPredicted RBP15.65■□□□□ 0.1
SKP1-213ENST00000524288 SGIP1Q9BQI5 828 aa15.64■□□□□ 0.09
SKP1-213ENST00000524288 MAP3K13O43283 966 aa15.62■□□□□ 0.09
SKP1-213ENST00000524288 DCAF8Q5TAQ9 597 aa15.62■□□□□ 0.09
SKP1-213ENST00000524288 GSE1Q14687 1217 aa15.6■□□□□ 0.09
SKP1-213ENST00000524288 SPOCK2Q92563 424 aa15.59■□□□□ 0.09
SKP1-213ENST00000524288 ASTLQ6HA08 431 aaPredicted RBP15.56■□□□□ 0.08
SKP1-213ENST00000524288 PCDHB13Q9Y5F0 798 aa15.54■□□□□ 0.08
SKP1-213ENST00000524288 ATMINO43313 823 aaPredicted RBP15.5■□□□□ 0.07
SKP1-213ENST00000524288 TIE1P35590 1138 aa15.5■□□□□ 0.07
SKP1-213ENST00000524288 PYGBP11216 843 aa15.47■□□□□ 0.07
SKP1-213ENST00000524288 LHX8Q68G74 356 aa15.45■□□□□ 0.06
SKP1-213ENST00000524288 IFNL1Q8IU54 200 aa15.45■□□□□ 0.06
SKP1-213ENST00000524288 CHRM1P11229 460 aaPredicted RBP15.44■□□□□ 0.06
SKP1-213ENST00000524288 BMP2KQ9NSY1 1161 aaPredicted RBP15.44■□□□□ 0.06
SKP1-213ENST00000524288 TRPC6Q9Y210 931 aa15.43■□□□□ 0.06
SKP1-213ENST00000524288 PELP1Q8IZL8 1130 aaKnown RBP15.42■□□□□ 0.06
SKP1-213ENST00000524288 SLC39A7Q92504 469 aa15.41■□□□□ 0.06
SKP1-213ENST00000524288 ATN1P54259 1190 aaPredicted RBP15.4■□□□□ 0.06
SKP1-213ENST00000524288 C7P10643 843 aa15.39■□□□□ 0.05
SKP1-213ENST00000524288 CIZ1Q9ULV3 898 aaPredicted RBP15.39■□□□□ 0.05
SKP1-213ENST00000524288 TTLL13PA6NNM8 815 aa15.37■□□□□ 0.05
SKP1-213ENST00000524288 ZNF467Q7Z7K2 595 aaPredicted RBP15.36■□□□□ 0.05
SKP1-213ENST00000524288 TRIM41Q8WV44 630 aa15.35■□□□□ 0.05
SKP1-213ENST00000524288 METRNQ9UJH8 293 aa15.35■□□□□ 0.05
SKP1-213ENST00000524288 TMEM106CQ9BVX2 250 aa15.3■□□□□ 0.04
SKP1-213ENST00000524288 PCDHB8Q9UN66 801 aa15.3■□□□□ 0.04
SKP1-213ENST00000524288 IER5LQ5T953 404 aa15.27■□□□□ 0.04
SKP1-213ENST00000524288 TRIM35Q9UPQ4 493 aa15.27■□□□□ 0.04
SKP1-213ENST00000524288 POTEB2H3BUK9 544 aa15.18■□□□□ 0.02
SKP1-213ENST00000524288 SEC24BO95487 1268 aa15.16■□□□□ 0.02
SKP1-213ENST00000524288 PDAP1Q13442 181 aaKnown RBP15.16■□□□□ 0.02
SKP1-213ENST00000524288 PSEN1P49768 467 aa15.15■□□□□ 0.02
SKP1-213ENST00000524288 POTEFA5A3E0 1075 aa15.13■□□□□ 0.01
SKP1-213ENST00000524288 RTN4Q9NQC3 1192 aaKnown RBP15.13■□□□□ 0.01
SKP1-213ENST00000524288 MAMSTRQ6ZN01 415 aa15.11■□□□□ 0.01
SKP1-213ENST00000524288 COLQQ9Y215 455 aaPredicted RBP15.09■□□□□ 0.01
SKP1-213ENST00000524288 GOLGA2Q08379 1002 aa15.08■□□□□ 0
SKP1-213ENST00000524288 OTUD5Q96G74 571 aa15.08■□□□□ 0
SKP1-213ENST00000524288 IRX5P78411 483 aaPredicted RBP15.06■□□□□ 0
SKP1-213ENST00000524288 PLCG2P16885 1265 aa15.05■□□□□ -0
SKP1-213ENST00000524288 RIOK3O14730 519 aaKnown RBP15.04■□□□□ -0
SKP1-213ENST00000524288 POTEJP0CG39 1038 aa15.03■□□□□ -0
SKP1-213ENST00000524288 OCEL1Q9H607 264 aa15.03■□□□□ -0
SKP1-213ENST00000524288 MKRN3Q13064 507 aaKnown RBP15.02■□□□□ -0
SKP1-213ENST00000524288 AMER1Q5JTC6 1135 aaPredicted RBP15.02■□□□□ -0
SKP1-213ENST00000524288 SCUBE2Q9NQ36 999 aa15.02■□□□□ -0
SKP1-213ENST00000524288 RNF25Q96BH1 459 aaPredicted RBP14.99□□□□□ -0.01
SKP1-213ENST00000524288 TAOK2Q9UL54 1235 aa14.98□□□□□ -0.01
SKP1-213ENST00000524288 VGFO15240 615 aaPredicted RBP14.97□□□□□ -0.01
SKP1-213ENST00000524288 CABP2Q9NPB3 220 aa14.95□□□□□ -0.02
SKP1-213ENST00000524288 ECM2O94769 699 aaPredicted RBP14.94□□□□□ -0.02
SKP1-213ENST00000524288 PKD2Q13563 968 aa14.93□□□□□ -0.02
SKP1-213ENST00000524288 ILDR1Q86SU0 546 aaPredicted RBP14.9□□□□□ -0.02
SKP1-213ENST00000524288 PDCD7Q8N8D1 485 aaKnown RBP14.9□□□□□ -0.02
SKP1-213ENST00000524288 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.9□□□□□ -0.023e-16■■□□□ 11.7
SKP1-213ENST00000524288 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.87□□□□□ -0.03
SKP1-213ENST00000524288 ZFP91Q96JP5 570 aaPredicted RBP14.87□□□□□ -0.03
SKP1-213ENST00000524288 L3MBTL3Q96JM7 780 aaPredicted RBP14.84□□□□□ -0.03
SKP1-213ENST00000524288 EFCAB3Q8N7B9 438 aa14.8□□□□□ -0.04
SKP1-213ENST00000524288 RGL2O15211 777 aa14.78□□□□□ -0.04
SKP1-213ENST00000524288 SOX12O15370 315 aa14.77□□□□□ -0.05
SKP1-213ENST00000524288 BCL11BQ9C0K0 894 aaPredicted RBP14.76□□□□□ -0.05
SKP1-213ENST00000524288 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.75□□□□□ -0.05
SKP1-213ENST00000524288 SLAIN1Q8ND83 568 aa14.73□□□□□ -0.05
SKP1-213ENST00000524288 STK25O00506 426 aa14.72□□□□□ -0.05
SKP1-213ENST00000524288 C3orf67Q6ZVT6 689 aa14.72□□□□□ -0.05
SKP1-213ENST00000524288 STK24Q9Y6E0 443 aa14.71□□□□□ -0.05
SKP1-213ENST00000524288 G3V3G9 751 aa14.7□□□□□ -0.06
SKP1-213ENST00000524288 DPY19L2Q6NUT2 758 aa14.68□□□□□ -0.06
SKP1-213ENST00000524288 BOLA1Q9Y3E2 137 aa14.67□□□□□ -0.06
SKP1-213ENST00000524288 SLC24A1O60721 1099 aa14.63□□□□□ -0.07
SKP1-213ENST00000524288 NLRP6P59044 892 aa14.63□□□□□ -0.07
SKP1-213ENST00000524288 PHF8Q9UPP1 1060 aa14.63□□□□□ -0.07
SKP1-213ENST00000524288 TMEM121BQ9BXQ6 578 aaPredicted RBP14.61□□□□□ -0.07
SKP1-213ENST00000524288 MS4A4AQ96JQ5 239 aa14.6□□□□□ -0.07
SKP1-213ENST00000524288 SNPHO15079 494 aa14.58□□□□□ -0.08
SKP1-213ENST00000524288 FBXO22Q8NEZ5 403 aa14.58□□□□□ -0.08
SKP1-213ENST00000524288 HS6ST3Q8IZP7 471 aa14.56□□□□□ -0.08
SKP1-213ENST00000524288 FAM163AQ96GL9 167 aaPredicted RBP14.56□□□□□ -0.08
SKP1-213ENST00000524288 MFRPQ9BY79 579 aa14.56□□□□□ -0.08
SKP1-213ENST00000524288 LCE2DQ5TA82 110 aaPredicted RBP14.53□□□□□ -0.08
SKP1-213ENST00000524288 MICALL2Q8IY33 904 aa14.53□□□□□ -0.08
SKP1-213ENST00000524288 POTEMA6NI47 508 aa14.51□□□□□ -0.09
SKP1-213ENST00000524288 POTEGQ6S5H5 508 aa14.49□□□□□ -0.09
SKP1-213ENST00000524288 CHGAP10645 457 aaKnown RBP14.45□□□□□ -0.1
SKP1-213ENST00000524288 DNAJC5Q9H3Z4 198 aa14.45□□□□□ -0.1
SKP1-213ENST00000524288 ST18O60284 1047 aa14.44□□□□□ -0.1
SKP1-213ENST00000524288 PCDH10Q9P2E7 1040 aa14.38□□□□□ -0.11
SKP1-213ENST00000524288 RYDENQ9NUL5 291 aaKnown RBP14.36□□□□□ -0.11
SKP1-213ENST00000524288 TMEM92Q6UXU6 159 aa14.35□□□□□ -0.11
SKP1-213ENST00000524288 DOK7Q18PE1 504 aa14.33□□□□□ -0.12
SKP1-213ENST00000524288 HOXB3P14651 431 aaPredicted RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms