RNA–Protein interactions for RNA: ENST00000523655.1

SREK1-213, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, human

TSL 5

Gene SREK1, Length 606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREK1-213	ENST00000523655	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.81	□□□□□ -0.2
SREK1-213	ENST00000523655	POTEI	P0CG38	1075 aa		13.8	□□□□□ -0.2
SREK1-213	ENST00000523655	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.8	□□□□□ -0.2
SREK1-213	ENST00000523655	MS4A3	Q96HJ5	214 aa		13.75	□□□□□ -0.21
SREK1-213	ENST00000523655	KIF12	Q96FN5	646 aa		13.72	□□□□□ -0.21
SREK1-213	ENST00000523655	DCAF8	Q5TAQ9	597 aa		13.71	□□□□□ -0.21
SREK1-213	ENST00000523655	MAP3K13	O43283	966 aa		13.7	□□□□□ -0.22
SREK1-213	ENST00000523655	FAM212A	Q96EL1	285 aa		13.68	□□□□□ -0.22
SREK1-213	ENST00000523655	DCBLD2	Q96PD2	775 aa		13.68	□□□□□ -0.22
SREK1-213	ENST00000523655	CLCN6	P51797	869 aa		13.67	□□□□□ -0.22
SREK1-213	ENST00000523655	TRPC6	Q9Y210	931 aa		13.67	□□□□□ -0.22
SREK1-213	ENST00000523655	PYGB	P11216	843 aa		13.62	□□□□□ -0.23
SREK1-213	ENST00000523655	SPOCK2	Q92563	424 aa		13.61	□□□□□ -0.23
SREK1-213	ENST00000523655	PELP1	Q8IZL8	1130 aa	Known RBP	13.59	□□□□□ -0.23
SREK1-213	ENST00000523655	PCDHB13	Q9Y5F0	798 aa		13.57	□□□□□ -0.24
SREK1-213	ENST00000523655	IFNL1	Q8IU54	200 aa		13.54	□□□□□ -0.24
SREK1-213	ENST00000523655	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.54	□□□□□ -0.24
SREK1-213	ENST00000523655	ATMIN	O43313	823 aa	Predicted RBP	13.52	□□□□□ -0.25
SREK1-213	ENST00000523655	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.51	□□□□□ -0.25
SREK1-213	ENST00000523655	GSE1	Q14687	1217 aa		13.5	□□□□□ -0.25
SREK1-213	ENST00000523655	PCDHB8	Q9UN66	801 aa		13.5	□□□□□ -0.25
SREK1-213	ENST00000523655	ATN1	P54259	1190 aa	Predicted RBP	13.49	□□□□□ -0.25
SREK1-213	ENST00000523655	ASTL	Q6HA08	431 aa	Predicted RBP	13.48	□□□□□ -0.25
SREK1-213	ENST00000523655	TTLL13P	A6NNM8	815 aa		13.43	□□□□□ -0.26
SREK1-213	ENST00000523655	LHX8	Q68G74	356 aa		13.43	□□□□□ -0.26
SREK1-213	ENST00000523655	SGIP1	Q9BQI5	828 aa		13.43	□□□□□ -0.26
SREK1-213	ENST00000523655	TIE1	P35590	1138 aa		13.41	□□□□□ -0.26
SREK1-213	ENST00000523655	POTEB2	H3BUK9	544 aa		13.38	□□□□□ -0.27
SREK1-213	ENST00000523655	TMEM106C	Q9BVX2	250 aa		13.38	□□□□□ -0.27
SREK1-213	ENST00000523655	METRN	Q9UJH8	293 aa		13.36	□□□□□ -0.27
SREK1-213	ENST00000523655	CHRM1	P11229	460 aa	Predicted RBP	13.35	□□□□□ -0.27
SREK1-213	ENST00000523655	TRIM35	Q9UPQ4	493 aa		13.34	□□□□□ -0.27
SREK1-213	ENST00000523655	POTEF	A5A3E0	1075 aa		13.31	□□□□□ -0.28
SREK1-213	ENST00000523655	SLC39A7	Q92504	469 aa		13.31	□□□□□ -0.28
SREK1-213	ENST00000523655	C7	P10643	843 aa		13.29	□□□□□ -0.28
SREK1-213	ENST00000523655	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.28	□□□□□ -0.28
SREK1-213	ENST00000523655	COLQ	Q9Y215	455 aa	Predicted RBP	13.27	□□□□□ -0.29
SREK1-213	ENST00000523655	POTEJ	P0CG39	1038 aa		13.26	□□□□□ -0.29
SREK1-213	ENST00000523655	PSEN1	P49768	467 aa		13.24	□□□□□ -0.29
SREK1-213	ENST00000523655	RNF25	Q96BH1	459 aa	Predicted RBP	13.23	□□□□□ -0.29
SREK1-213	ENST00000523655	PKD2	Q13563	968 aa		13.19	□□□□□ -0.3
SREK1-213	ENST00000523655	OTUD5	Q96G74	571 aa		13.19	□□□□□ -0.3
SREK1-213	ENST00000523655	SEC24B	O95487	1268 aa		13.18	□□□□□ -0.3
SREK1-213	ENST00000523655	PDAP1	Q13442	181 aa	Known RBP	13.18	□□□□□ -0.3
SREK1-213	ENST00000523655	TRIM41	Q8WV44	630 aa		13.16	□□□□□ -0.3
SREK1-213	ENST00000523655	ECM2	O94769	699 aa	Predicted RBP	13.13	□□□□□ -0.31
SREK1-213	ENST00000523655	IER5L	Q5T953	404 aa		13.13	□□□□□ -0.31
SREK1-213	ENST00000523655	IRX5	P78411	483 aa	Predicted RBP	13.12	□□□□□ -0.31
SREK1-213	ENST00000523655	RIOK3	O14730	519 aa	Known RBP	13.11	□□□□□ -0.31
SREK1-213	ENST00000523655	CABP2	Q9NPB3	220 aa		13.11	□□□□□ -0.31
SREK1-213	ENST00000523655	RGL2	O15211	777 aa		13.08	□□□□□ -0.32
SREK1-213	ENST00000523655	PLCG2	P16885	1265 aa		13.08	□□□□□ -0.32
SREK1-213	ENST00000523655	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.07	□□□□□ -0.32
SREK1-213	ENST00000523655	GOLGA2	Q08379	1002 aa		13.07	□□□□□ -0.32
SREK1-213	ENST00000523655	ZFP91	Q96JP5	570 aa	Predicted RBP	13.07	□□□□□ -0.32
SREK1-213	ENST00000523655	MKRN3	Q13064	507 aa	Known RBP	13.06	□□□□□ -0.32
SREK1-213	ENST00000523655	OCEL1	Q9H607	264 aa		13.04	□□□□□ -0.32
SREK1-213	ENST00000523655	PDCD7	Q8N8D1	485 aa	Known RBP	13.02	□□□□□ -0.33
SREK1-213	ENST00000523655	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.02	□□□□□ -0.33	2e-7	■■■□□ 15.9
SREK1-213	ENST00000523655	VGF	O15240	615 aa	Predicted RBP	13.01	□□□□□ -0.33
SREK1-213	ENST00000523655	DPY19L2	Q6NUT2	758 aa		13.01	□□□□□ -0.33
SREK1-213	ENST00000523655	EFCAB3	Q8N7B9	438 aa		13.01	□□□□□ -0.33
SREK1-213	ENST00000523655	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.95	□□□□□ -0.34
SREK1-213	ENST00000523655	SCUBE2	Q9NQ36	999 aa		12.95	□□□□□ -0.34
SREK1-213	ENST00000523655	MAMSTR	Q6ZN01	415 aa		12.94	□□□□□ -0.34
SREK1-213	ENST00000523655	STK24	Q9Y6E0	443 aa		12.92	□□□□□ -0.34
SREK1-213	ENST00000523655	ILDR1	Q86SU0	546 aa	Predicted RBP	12.91	□□□□□ -0.34
SREK1-213	ENST00000523655	STK25	O00506	426 aa		12.9	□□□□□ -0.34
SREK1-213	ENST00000523655	PHF8	Q9UPP1	1060 aa		12.88	□□□□□ -0.35
SREK1-213	ENST00000523655	SLAIN1	Q8ND83	568 aa		12.86	□□□□□ -0.35
SREK1-213	ENST00000523655	MS4A4A	Q96JQ5	239 aa		12.84	□□□□□ -0.35
SREK1-213	ENST00000523655	TAOK2	Q9UL54	1235 aa		12.81	□□□□□ -0.36
SREK1-213	ENST00000523655	L3MBTL3	Q96JM7	780 aa	Predicted RBP	12.8	□□□□□ -0.36
SREK1-213	ENST00000523655	SOX12	O15370	315 aa		12.79	□□□□□ -0.36
SREK1-213	ENST00000523655	FAM163A	Q96GL9	167 aa	Predicted RBP	12.79	□□□□□ -0.36
SREK1-213	ENST00000523655	MFRP	Q9BY79	579 aa		12.78	□□□□□ -0.36
SREK1-213	ENST00000523655	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	12.78	□□□□□ -0.36
SREK1-213	ENST00000523655	BOLA1	Q9Y3E2	137 aa		12.78	□□□□□ -0.36
SREK1-213	ENST00000523655	LCE2D	Q5TA82	110 aa	Predicted RBP	12.76	□□□□□ -0.37
SREK1-213	ENST00000523655	C3orf67	Q6ZVT6	689 aa		12.76	□□□□□ -0.37
SREK1-213	ENST00000523655	FBXO22	Q8NEZ5	403 aa		12.76	□□□□□ -0.37
SREK1-213	ENST00000523655	CHGA	P10645	457 aa	Known RBP	12.75	□□□□□ -0.37
SREK1-213	ENST00000523655	NLRP6	P59044	892 aa		12.71	□□□□□ -0.37
SREK1-213	ENST00000523655		G3V3G9	751 aa		12.7	□□□□□ -0.38
SREK1-213	ENST00000523655	MICALL2	Q8IY33	904 aa		12.7	□□□□□ -0.38
SREK1-213	ENST00000523655	HS6ST3	Q8IZP7	471 aa		12.69	□□□□□ -0.38
SREK1-213	ENST00000523655	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	12.68	□□□□□ -0.38
SREK1-213	ENST00000523655	DCAF8L2	P0C7V8	631 aa		12.67	□□□□□ -0.38
SREK1-213	ENST00000523655	TMEM92	Q6UXU6	159 aa		12.66	□□□□□ -0.38
SREK1-213	ENST00000523655	PPP1R37	O75864	691 aa		12.65	□□□□□ -0.38
SREK1-213	ENST00000523655	NKX1-1	Q15270	411 aa	Predicted RBP	12.63	□□□□□ -0.39
SREK1-213	ENST00000523655	RTN4	Q9NQC3	1192 aa	Known RBP	12.63	□□□□□ -0.39
SREK1-213	ENST00000523655	POTEM	A6NI47	508 aa		12.62	□□□□□ -0.39
SREK1-213	ENST00000523655	POTEG	Q6S5H5	508 aa		12.62	□□□□□ -0.39
SREK1-213	ENST00000523655	ST18	O60284	1047 aa		12.61	□□□□□ -0.39
SREK1-213	ENST00000523655	HOXB3	P14651	431 aa	Predicted RBP	12.52	□□□□□ -0.41
SREK1-213	ENST00000523655	MARVELD3	Q96A59	401 aa		12.51	□□□□□ -0.41
SREK1-213	ENST00000523655	SNPH	O15079	494 aa		12.5	□□□□□ -0.41
SREK1-213	ENST00000523655	AMER1	Q5JTC6	1135 aa	Predicted RBP	12.49	□□□□□ -0.41
SREK1-213	ENST00000523655	DNAJC5	Q9H3Z4	198 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms