RNA–Protein interactions for RNA: ENST00000522796.1

HMGB4-204, Transcript of high mobility group box 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGB4, Length 2,505 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-204ENST00000522796 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.56□□□□□ -0.56
HMGB4-204ENST00000522796 HSP90B1P14625 803 aaKnown RBP11.53□□□□□ -0.56
HMGB4-204ENST00000522796 BCCIPQ9P287 314 aaKnown RBP eCLIP11.52□□□□□ -0.56
HMGB4-204ENST00000522796 NAP1L2Q9ULW6 460 aaPredicted RBP11.52□□□□□ -0.57
HMGB4-204ENST00000522796 RTL5Q5HYW3 569 aaPredicted RBP11.48□□□□□ -0.57
HMGB4-204ENST00000522796 IRX6P78412 446 aaPredicted RBP11.46□□□□□ -0.57
HMGB4-204ENST00000522796 NBR1Q14596 966 aa11.46□□□□□ -0.57
HMGB4-204ENST00000522796 FKBP8Q14318 412 aa11.46□□□□□ -0.58
HMGB4-204ENST00000522796 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.45□□□□□ -0.58
HMGB4-204ENST00000522796 NOP58Q9Y2X3 529 aaKnown RBP11.45□□□□□ -0.58
HMGB4-204ENST00000522796 WASHC2CQ9Y4E1 1318 aa11.41□□□□□ -0.58
HMGB4-204ENST00000522796 TMEM132AQ24JP5 1023 aa11.41□□□□□ -0.58
HMGB4-204ENST00000522796 IPO4Q8TEX9 1081 aaKnown RBP11.4□□□□□ -0.58
HMGB4-204ENST00000522796 WASHC2AQ641Q2 1341 aa11.39□□□□□ -0.59
HMGB4-204ENST00000522796 CHMP4BQ9H444 224 aaKnown RBP11.39□□□□□ -0.59
HMGB4-204ENST00000522796 RRP9O43818 475 aaKnown RBP11.38□□□□□ -0.59
HMGB4-204ENST00000522796 ZFP91Q96JP5 570 aaPredicted RBP11.38□□□□□ -0.59
HMGB4-204ENST00000522796 BBXQ8WY36 941 aaPredicted RBP11.35□□□□□ -0.59
HMGB4-204ENST00000522796 TEX2Q8IWB9 1127 aa11.33□□□□□ -0.6
HMGB4-204ENST00000522796 FAM43AQ8N2R8 423 aa11.33□□□□□ -0.6
HMGB4-204ENST00000522796 ITGAEP38570 1179 aa11.32□□□□□ -0.6
HMGB4-204ENST00000522796 HSP90AA2PQ14568 343 aaPredicted RBP11.32□□□□□ -0.6
HMGB4-204ENST00000522796 POLR3GLQ9BT43 218 aa11.32□□□□□ -0.6
HMGB4-204ENST00000522796 CHRM1P11229 460 aaPredicted RBP11.31□□□□□ -0.6
HMGB4-204ENST00000522796 USP35Q9P2H5 1018 aa11.31□□□□□ -0.6
HMGB4-204ENST00000522796 IGSF3O75054 1194 aa11.29□□□□□ -0.6
HMGB4-204ENST00000522796 GTF2E1P29083 439 aaPredicted RBP11.29□□□□□ -0.6
HMGB4-204ENST00000522796 SECISBP2LQ93073 1101 aaKnown RBP11.29□□□□□ -0.6
HMGB4-204ENST00000522796 PAK3O75914 559 aaPredicted RBP11.29□□□□□ -0.6
HMGB4-204ENST00000522796 BRPF3Q9ULD4 1205 aa11.29□□□□□ -0.6
HMGB4-204ENST00000522796 UBTFP17480 764 aaKnown RBP11.28□□□□□ -0.6
HMGB4-204ENST00000522796 FTSJ3Q8IY81 847 aaKnown RBP11.26□□□□□ -0.61
HMGB4-204ENST00000522796 PPP6R1Q9UPN7 881 aa11.26□□□□□ -0.61
HMGB4-204ENST00000522796 SHROOM4Q9ULL8 1493 aa11.25□□□□□ -0.61
HMGB4-204ENST00000522796 CCDC9Q9Y3X0 531 aaKnown RBP11.25□□□□□ -0.61
HMGB4-204ENST00000522796 CNPY4Q8N129 248 aa11.25□□□□□ -0.61
HMGB4-204ENST00000522796 PRDM4Q9UKN5 801 aa11.25□□□□□ -0.61
HMGB4-204ENST00000522796 NCLP19338 710 aaKnown RBP11.24□□□□□ -0.61
HMGB4-204ENST00000522796 CALD1Q05682 793 aaKnown RBP11.24□□□□□ -0.61
HMGB4-204ENST00000522796 CANXP27824 592 aaKnown RBP11.23□□□□□ -0.61
HMGB4-204ENST00000522796 NEFMP07197 916 aa11.22□□□□□ -0.61
HMGB4-204ENST00000522796 STAC3Q96MF2 364 aa11.2□□□□□ -0.62
HMGB4-204ENST00000522796 RNF216Q9NWF9 866 aaPredicted RBP11.2□□□□□ -0.62
HMGB4-204ENST00000522796 CFAP44Q96MT7 982 aa11.2□□□□□ -0.62
HMGB4-204ENST00000522796 CENPJQ9HC77 1338 aaPredicted RBP11.19□□□□□ -0.62
HMGB4-204ENST00000522796 HSP90AA1P07900 732 aaKnown RBP11.19□□□□□ -0.62
HMGB4-204ENST00000522796 HMGB1P09429 215 aaKnown RBP11.18□□□□□ -0.62
HMGB4-204ENST00000522796 TICAM2Q86XR7 235 aa11.18□□□□□ -0.62
HMGB4-204ENST00000522796 IPO9Q96P70 1041 aaKnown RBP11.18□□□□□ -0.62
HMGB4-204ENST00000522796 CNGB1Q14028 1251 aaPredicted RBP11.17□□□□□ -0.62
HMGB4-204ENST00000522796 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.17□□□□□ -0.62
HMGB4-204ENST00000522796 PRDM10Q9NQV6 1147 aa11.17□□□□□ -0.62
HMGB4-204ENST00000522796 PLCB2Q00722 1185 aa11.16□□□□□ -0.62
HMGB4-204ENST00000522796 ZBTB47Q9UFB7 747 aaPredicted RBP11.15□□□□□ -0.62
HMGB4-204ENST00000522796 GSE1Q14687 1217 aa11.13□□□□□ -0.63
HMGB4-204ENST00000522796 KCNG1Q9UIX4 513 aa11.13□□□□□ -0.63
HMGB4-204ENST00000522796 ANP32AP39687 249 aaKnown RBP11.13□□□□□ -0.63
HMGB4-204ENST00000522796 WWC1Q8IX03 1113 aa11.12□□□□□ -0.63
HMGB4-204ENST00000522796 RGS3P49796 1198 aa11.1□□□□□ -0.63
HMGB4-204ENST00000522796 ARID4BQ4LE39 1312 aaPredicted RBP11.1□□□□□ -0.63
HMGB4-204ENST00000522796 FOXD1Q16676 465 aa11.1□□□□□ -0.63
HMGB4-204ENST00000522796 PPM1GO15355 546 aaPredicted RBP11.09□□□□□ -0.63
HMGB4-204ENST00000522796 ZNF592Q92610 1267 aa11.08□□□□□ -0.64
HMGB4-204ENST00000522796 CLSTN1O94985 981 aa11.06□□□□□ -0.64
HMGB4-204ENST00000522796 TMED8Q6PL24 325 aaPredicted RBP11.06□□□□□ -0.64
HMGB4-204ENST00000522796 PUS7Q96PZ0 661 aaKnown RBP11.06□□□□□ -0.64
HMGB4-204ENST00000522796 PDCL3Q9H2J4 239 aa11.06□□□□□ -0.64
HMGB4-204ENST00000522796 GRIPAP1Q4V328 841 aa11.02□□□□□ -0.64
HMGB4-204ENST00000522796 PPP4R2Q9NY27 417 aa11.01□□□□□ -0.65
HMGB4-204ENST00000522796 PLCD3Q8N3E9 789 aa11.01□□□□□ -0.65
HMGB4-204ENST00000522796 ZNF830Q96NB3 372 aaPredicted RBP11□□□□□ -0.65
HMGB4-204ENST00000522796 RRAGDQ9NQL2 400 aaPredicted RBP10.99□□□□□ -0.65
HMGB4-204ENST00000522796 PLCD4Q9BRC7 762 aa10.99□□□□□ -0.65
HMGB4-204ENST00000522796 PNNQ9H307 717 aaKnown RBP10.98□□□□□ -0.65
HMGB4-204ENST00000522796 RGS22Q8NE09 1264 aa10.98□□□□□ -0.65
HMGB4-204ENST00000522796 FRAT1Q92837 279 aaPredicted RBP10.98□□□□□ -0.65
HMGB4-204ENST00000522796 KCNH8Q96L42 1107 aa10.98□□□□□ -0.65
HMGB4-204ENST00000522796 PTMAP06454 111 aaKnown RBP10.97□□□□□ -0.65
HMGB4-204ENST00000522796 FAM43BQ6ZT52 329 aaPredicted RBP10.97□□□□□ -0.65
HMGB4-204ENST00000522796 FAM193AP78312 1265 aa10.96□□□□□ -0.65
HMGB4-204ENST00000522796 VGFO15240 615 aaPredicted RBP10.96□□□□□ -0.66
HMGB4-204ENST00000522796 ARID3AQ99856 593 aa10.96□□□□□ -0.66
HMGB4-204ENST00000522796 SMAP1Q8IYB5 467 aaPredicted RBP10.94□□□□□ -0.66
HMGB4-204ENST00000522796 CLCN1P35523 988 aa10.94□□□□□ -0.66
HMGB4-204ENST00000522796 DCAF11Q8TEB1 546 aa10.94□□□□□ -0.66
HMGB4-204ENST00000522796 PSMD1Q99460 953 aa10.94□□□□□ -0.66
HMGB4-204ENST00000522796 LAS1LQ9Y4W2 734 aaKnown RBP10.93□□□□□ -0.66
HMGB4-204ENST00000522796 CLGNO14967 610 aa10.92□□□□□ -0.66
HMGB4-204ENST00000522796 MCCP23508 829 aa10.92□□□□□ -0.66
HMGB4-204ENST00000522796 TMEM51Q9NW97 253 aa10.92□□□□□ -0.66
HMGB4-204ENST00000522796 PATL2C9JE40 543 aaKnown RBP10.92□□□□□ -0.66
HMGB4-204ENST00000522796 TPM2P07951 284 aa10.91□□□□□ -0.66
HMGB4-204ENST00000522796 PTMSP20962 102 aa10.9□□□□□ -0.67
HMGB4-204ENST00000522796 EEA1Q15075 1411 aa10.89□□□□□ -0.67
HMGB4-204ENST00000522796 UTP14CQ5TAP6 766 aaKnown RBP10.89□□□□□ -0.67
HMGB4-204ENST00000522796 DDRGK1Q96HY6 314 aa10.89□□□□□ -0.67
HMGB4-204ENST00000522796 MMP14P50281 582 aa10.88□□□□□ -0.67
HMGB4-204ENST00000522796 IRX3P78415 501 aaPredicted RBP10.88□□□□□ -0.67
HMGB4-204ENST00000522796 CCER2I3L3R5 266 aa10.86□□□□□ -0.67
HMGB4-204ENST00000522796 CERS3Q8IU89 383 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms