RNA–Protein interactions for RNA: ENST00000518604.1

SQLE-202, Transcript of squalene epoxidase, humanhuman

TSL 2

Gene SQLE, Length 743 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-202ENST00000518604 PRKAR2AP13861 404 aaKnown RBP11.48□□□□□ -0.57
SQLE-202ENST00000518604 SLC24A1O60721 1099 aa11.47□□□□□ -0.57
SQLE-202ENST00000518604 FARP1Q9Y4F1 1045 aaPredicted RBP11.47□□□□□ -0.57
SQLE-202ENST00000518604 RGL2O15211 777 aa11.45□□□□□ -0.58
SQLE-202ENST00000518604 RASEFQ8IZ41 740 aa11.45□□□□□ -0.58
SQLE-202ENST00000518604 CHRM1P11229 460 aaPredicted RBP11.43□□□□□ -0.58
SQLE-202ENST00000518604 TAOK2Q9UL54 1235 aa11.39□□□□□ -0.59
SQLE-202ENST00000518604 BBXQ8WY36 941 aaPredicted RBP11.34□□□□□ -0.59
SQLE-202ENST00000518604 RIOK3O14730 519 aaKnown RBP11.33□□□□□ -0.6
SQLE-202ENST00000518604 PLCB2Q00722 1185 aa11.32□□□□□ -0.6
SQLE-202ENST00000518604 C19orf67A6NJJ6 358 aa11.31□□□□□ -0.6
SQLE-202ENST00000518604 RNF25Q96BH1 459 aaPredicted RBP11.31□□□□□ -0.6
SQLE-202ENST00000518604 TSPYL2Q9H2G4 693 aaPredicted RBP11.31□□□□□ -0.6
SQLE-202ENST00000518604 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.31□□□□□ -0.6
SQLE-202ENST00000518604 PAK3O75914 559 aaPredicted RBP11.3□□□□□ -0.6
SQLE-202ENST00000518604 CHGAP10645 457 aaKnown RBP11.28□□□□□ -0.6
SQLE-202ENST00000518604 PYGBP11216 843 aa11.28□□□□□ -0.6
SQLE-202ENST00000518604 VGFO15240 615 aaPredicted RBP11.27□□□□□ -0.61
SQLE-202ENST00000518604 HS6ST3Q8IZP7 471 aa11.26□□□□□ -0.61
SQLE-202ENST00000518604 SGIP1Q9BQI5 828 aa11.26□□□□□ -0.61
SQLE-202ENST00000518604 GABBR2O75899 941 aa11.25□□□□□ -0.61
SQLE-202ENST00000518604 CCDC61Q9Y6R9 512 aa11.25□□□□□ -0.61
SQLE-202ENST00000518604 ZNF467Q7Z7K2 595 aaPredicted RBP11.23□□□□□ -0.61
SQLE-202ENST00000518604 DNAJC5Q9H3Z4 198 aa11.23□□□□□ -0.61
SQLE-202ENST00000518604 LHX8Q68G74 356 aa11.21□□□□□ -0.61
SQLE-202ENST00000518604 CD44P16070 742 aaKnown RBP11.17□□□□□ -0.62
SQLE-202ENST00000518604 SPRYD3Q8NCJ5 442 aa11.17□□□□□ -0.62
SQLE-202ENST00000518604 STK25O00506 426 aa11.16□□□□□ -0.62
SQLE-202ENST00000518604 ZNF579Q8NAF0 562 aaKnown RBP11.16□□□□□ -0.62
SQLE-202ENST00000518604 PAXIP1Q6ZW49 1069 aaPredicted RBP11.15□□□□□ -0.62
SQLE-202ENST00000518604 ZRANB1Q9UGI0 708 aa11.15□□□□□ -0.62
SQLE-202ENST00000518604 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.14□□□□□ -0.63
SQLE-202ENST00000518604 ZFP91Q96JP5 570 aaPredicted RBP11.14□□□□□ -0.63
SQLE-202ENST00000518604 PDAP1Q13442 181 aaKnown RBP11.13□□□□□ -0.63
SQLE-202ENST00000518604 KIF12Q96FN5 646 aa11.13□□□□□ -0.63
SQLE-202ENST00000518604 CFAP44Q96MT7 982 aa11.12□□□□□ -0.63
SQLE-202ENST00000518604 HAP1P54257 671 aaPredicted RBP11.11□□□□□ -0.63
SQLE-202ENST00000518604 PCDHB13Q9Y5F0 798 aa11.11□□□□□ -0.63
SQLE-202ENST00000518604 BCL11BQ9C0K0 894 aaPredicted RBP11.1□□□□□ -0.63
SQLE-202ENST00000518604 STK24Q9Y6E0 443 aa11.1□□□□□ -0.63
SQLE-202ENST00000518604 MAP3K13O43283 966 aa11.09□□□□□ -0.63
SQLE-202ENST00000518604 PCDHB8Q9UN66 801 aa11.09□□□□□ -0.63
SQLE-202ENST00000518604 POTEIP0CG38 1075 aa11.06□□□□□ -0.64
SQLE-202ENST00000518604 PSEN1P49768 467 aa11.06□□□□□ -0.64
SQLE-202ENST00000518604 IFNL1Q8IU54 200 aa11.06□□□□□ -0.64
SQLE-202ENST00000518604 RYDENQ9NUL5 291 aaKnown RBP11.06□□□□□ -0.64
SQLE-202ENST00000518604 NKX1-1Q15270 411 aaPredicted RBP11.04□□□□□ -0.64
SQLE-202ENST00000518604 VSIG10Q8N0Z9 540 aa11.04□□□□□ -0.64
SQLE-202ENST00000518604 PHF12Q96QT6 1004 aa11.02□□□□□ -0.65
SQLE-202ENST00000518604 GTPBP6O43824 516 aaPredicted RBP11□□□□□ -0.65
SQLE-202ENST00000518604 CLCN6P51797 869 aa11□□□□□ -0.65
SQLE-202ENST00000518604 MS4A3Q96HJ5 214 aa10.93□□□□□ -0.66
SQLE-202ENST00000518604 TSHZ2Q9NRE2 1034 aa10.93□□□□□ -0.66
SQLE-202ENST00000518604 SOX12O15370 315 aa10.91□□□□□ -0.66
SQLE-202ENST00000518604 CABP2Q9NPB3 220 aa10.89□□□□□ -0.67
SQLE-202ENST00000518604 TIE1P35590 1138 aa10.88□□□□□ -0.67
SQLE-202ENST00000518604 TMEM106CQ9BVX2 250 aa10.88□□□□□ -0.67
SQLE-202ENST00000518604 EFCAB3Q8N7B9 438 aa10.87□□□□□ -0.67
SQLE-202ENST00000518604 NLRP6P59044 892 aa10.86□□□□□ -0.67
SQLE-202ENST00000518604 MFRPQ9BY79 579 aa10.86□□□□□ -0.67
SQLE-202ENST00000518604 KDM2AQ9Y2K7 1162 aa10.86□□□□□ -0.67
SQLE-202ENST00000518604 GOLGA2Q08379 1002 aa10.84□□□□□ -0.67
SQLE-202ENST00000518604 PLSCR2Q9NRY7 297 aa10.84□□□□□ -0.67
SQLE-202ENST00000518604 TRPC6Q9Y210 931 aa10.82□□□□□ -0.68
SQLE-202ENST00000518604 GALR2O43603 387 aaPredicted RBP10.81□□□□□ -0.68
SQLE-202ENST00000518604 FBXO22Q8NEZ5 403 aa10.81□□□□□ -0.68
SQLE-202ENST00000518604 TTLL13PA6NNM8 815 aa10.8□□□□□ -0.68
SQLE-202ENST00000518604 MKRN3Q13064 507 aaKnown RBP10.79□□□□□ -0.68
SQLE-202ENST00000518604 PHF8Q9UPP1 1060 aa10.79□□□□□ -0.68
SQLE-202ENST00000518604 DCBLD2Q96PD2 775 aa10.78□□□□□ -0.68
SQLE-202ENST00000518604 BMP2KQ9NSY1 1161 aaPredicted RBP10.78□□□□□ -0.68
SQLE-202ENST00000518604 BCANQ96GW7 911 aa10.72□□□□□ -0.69
SQLE-202ENST00000518604 TRIM35Q9UPQ4 493 aa10.72□□□□□ -0.69
SQLE-202ENST00000518604 ILDR1Q86SU0 546 aaPredicted RBP10.71□□□□□ -0.69
SQLE-202ENST00000518604 OTUD5Q96G74 571 aa10.71□□□□□ -0.69
SQLE-202ENST00000518604 PPP1R37O75864 691 aa10.7□□□□□ -0.7
SQLE-202ENST00000518604 ASTLQ6HA08 431 aaPredicted RBP10.7□□□□□ -0.7
SQLE-202ENST00000518604 MS4A4AQ96JQ5 239 aa10.7□□□□□ -0.7
SQLE-202ENST00000518604 POTEB2H3BUK9 544 aa10.69□□□□□ -0.7
SQLE-202ENST00000518604 ATMINO43313 823 aaPredicted RBP10.69□□□□□ -0.7
SQLE-202ENST00000518604 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.69□□□□□ -0.72e-10■□□□□ 8.9
SQLE-202ENST00000518604 IER5LQ5T953 404 aa10.68□□□□□ -0.7
SQLE-202ENST00000518604 ATN1P54259 1190 aaPredicted RBP10.67□□□□□ -0.7
SQLE-202ENST00000518604 CADPS2Q86UW7 1296 aa10.64□□□□□ -0.71
SQLE-202ENST00000518604 WDR70Q9NW82 654 aa10.64□□□□□ -0.71
SQLE-202ENST00000518604 OCEL1Q9H607 264 aa10.61□□□□□ -0.71
SQLE-202ENST00000518604 IRX5P78411 483 aaPredicted RBP10.6□□□□□ -0.71
SQLE-202ENST00000518604 P3H3Q8IVL6 736 aa10.59□□□□□ -0.71
SQLE-202ENST00000518604 POTEMA6NI47 508 aa10.58□□□□□ -0.72
SQLE-202ENST00000518604 PDE4AP27815 886 aa10.58□□□□□ -0.72
SQLE-202ENST00000518604 PELP1Q8IZL8 1130 aaKnown RBP10.56□□□□□ -0.72
SQLE-202ENST00000518604 PDCD7Q8N8D1 485 aaKnown RBP10.56□□□□□ -0.72
SQLE-202ENST00000518604 PLCG2P16885 1265 aa10.55□□□□□ -0.72
SQLE-202ENST00000518604 NBR1Q14596 966 aa10.55□□□□□ -0.72
SQLE-202ENST00000518604 SLC39A7Q92504 469 aa10.55□□□□□ -0.72
SQLE-202ENST00000518604 POTEGQ6S5H5 508 aa10.54□□□□□ -0.72
SQLE-202ENST00000518604 C7P10643 843 aa10.53□□□□□ -0.72
SQLE-202ENST00000518604 DPY19L2Q6NUT2 758 aa10.53□□□□□ -0.72
SQLE-202ENST00000518604 CRISPLD2Q9H0B8 497 aa10.53□□□□□ -0.72
SQLE-202ENST00000518604 L3MBTL3Q96JM7 780 aaPredicted RBP10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms