RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 CCDC61Q9Y6R9 512 aa13.93□□□□□ -0.18
NUP54-218ENST00000515460 LHX8Q68G74 356 aa13.92□□□□□ -0.18
NUP54-218ENST00000515460 MS4A3Q96HJ5 214 aa13.91□□□□□ -0.18
NUP54-218ENST00000515460 KIF12Q96FN5 646 aa13.85□□□□□ -0.19
NUP54-218ENST00000515460 NUBP1P53384 320 aa13.84□□□□□ -0.19
NUP54-218ENST00000515460 MAP3K13O43283 966 aa13.8□□□□□ -0.2
NUP54-218ENST00000515460 VASPP50552 380 aaPredicted RBP13.79□□□□□ -0.2
NUP54-218ENST00000515460 PELP1Q8IZL8 1130 aaKnown RBP13.78□□□□□ -0.2
NUP54-218ENST00000515460 KLHL34Q8N239 644 aa13.77□□□□□ -0.21
NUP54-218ENST00000515460 FAM212AQ96EL1 285 aa13.77□□□□□ -0.21
NUP54-218ENST00000515460 ATMINO43313 823 aaPredicted RBP13.74□□□□□ -0.21
NUP54-218ENST00000515460 DCAF8Q5TAQ9 597 aa13.73□□□□□ -0.21
NUP54-218ENST00000515460 ASTLQ6HA08 431 aaPredicted RBP13.73□□□□□ -0.21
NUP54-218ENST00000515460 TRPC6Q9Y210 931 aa13.72□□□□□ -0.21
NUP54-218ENST00000515460 PCDHB13Q9Y5F0 798 aa13.69□□□□□ -0.22
NUP54-218ENST00000515460 ATN1P54259 1190 aaPredicted RBP13.67□□□□□ -0.22
NUP54-218ENST00000515460 BMP2KQ9NSY1 1161 aaPredicted RBP13.67□□□□□ -0.22
NUP54-218ENST00000515460 METRNQ9UJH8 293 aa13.65□□□□□ -0.22
NUP54-218ENST00000515460 POTEB2H3BUK9 544 aa13.63□□□□□ -0.23
NUP54-218ENST00000515460 PYGBP11216 843 aa13.63□□□□□ -0.23
NUP54-218ENST00000515460 SLC39A7Q92504 469 aa13.63□□□□□ -0.23
NUP54-218ENST00000515460 IFNL1Q8IU54 200 aa13.62□□□□□ -0.23
NUP54-218ENST00000515460 C7P10643 843 aa13.61□□□□□ -0.23
NUP54-218ENST00000515460 TIE1P35590 1138 aa13.61□□□□□ -0.23
NUP54-218ENST00000515460 SGIP1Q9BQI5 828 aa13.61□□□□□ -0.23
NUP54-218ENST00000515460 TTLL13PA6NNM8 815 aa13.58□□□□□ -0.24
NUP54-218ENST00000515460 IFNLR1Q8IU57 520 aaPredicted RBP13.57□□□□□ -0.24
NUP54-218ENST00000515460 GSE1Q14687 1217 aa13.54□□□□□ -0.24
NUP54-218ENST00000515460 OTUD5Q96G74 571 aa13.53□□□□□ -0.24
NUP54-218ENST00000515460 TMEM106CQ9BVX2 250 aa13.51□□□□□ -0.25
NUP54-218ENST00000515460 SPOCK2Q92563 424 aa13.5□□□□□ -0.25
NUP54-218ENST00000515460 PCDHB8Q9UN66 801 aa13.5□□□□□ -0.25
NUP54-218ENST00000515460 TRIM35Q9UPQ4 493 aa13.5□□□□□ -0.25
NUP54-218ENST00000515460 SEC24BO95487 1268 aa13.47□□□□□ -0.25
NUP54-218ENST00000515460 POTEJP0CG39 1038 aa13.46□□□□□ -0.25
NUP54-218ENST00000515460 CIZ1Q9ULV3 898 aaPredicted RBP13.46□□□□□ -0.25
NUP54-218ENST00000515460 POTEFA5A3E0 1075 aa13.45□□□□□ -0.26
NUP54-218ENST00000515460 COLQQ9Y215 455 aaPredicted RBP13.43□□□□□ -0.26
NUP54-218ENST00000515460 IER5LQ5T953 404 aa13.38□□□□□ -0.27
NUP54-218ENST00000515460 CHRM1P11229 460 aaPredicted RBP13.37□□□□□ -0.27
NUP54-218ENST00000515460 MAMSTRQ6ZN01 415 aa13.37□□□□□ -0.27
NUP54-218ENST00000515460 ZNF467Q7Z7K2 595 aaPredicted RBP13.36□□□□□ -0.27
NUP54-218ENST00000515460 SCUBE2Q9NQ36 999 aa13.34□□□□□ -0.27
NUP54-218ENST00000515460 PLCG2P16885 1265 aa13.3□□□□□ -0.28
NUP54-218ENST00000515460 PSEN1P49768 467 aa13.28□□□□□ -0.28
NUP54-218ENST00000515460 IRX5P78411 483 aaPredicted RBP13.26□□□□□ -0.29
NUP54-218ENST00000515460 GOLGA2Q08379 1002 aa13.26□□□□□ -0.29
NUP54-218ENST00000515460 OCEL1Q9H607 264 aa13.24□□□□□ -0.29
NUP54-218ENST00000515460 PDAP1Q13442 181 aaKnown RBP13.22□□□□□ -0.29
NUP54-218ENST00000515460 MKRN3Q13064 507 aaKnown RBP13.21□□□□□ -0.29
NUP54-218ENST00000515460 FAM163AQ96GL9 167 aaPredicted RBP13.17□□□□□ -0.3
NUP54-218ENST00000515460 TRIM41Q8WV44 630 aa13.16□□□□□ -0.3
NUP54-218ENST00000515460 CABP2Q9NPB3 220 aa13.14□□□□□ -0.31
NUP54-218ENST00000515460 SLAIN1Q8ND83 568 aa13.13□□□□□ -0.31
NUP54-218ENST00000515460 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.13□□□□□ -0.311e-7■■■□□ 16.2
NUP54-218ENST00000515460 PDCD7Q8N8D1 485 aaKnown RBP13.11□□□□□ -0.31
NUP54-218ENST00000515460 POTEMA6NI47 508 aa13.1□□□□□ -0.31
NUP54-218ENST00000515460 POTEGQ6S5H5 508 aa13.08□□□□□ -0.32
NUP54-218ENST00000515460 RIOK3O14730 519 aaKnown RBP13.04□□□□□ -0.32
NUP54-218ENST00000515460 RNF25Q96BH1 459 aaPredicted RBP13.04□□□□□ -0.32
NUP54-218ENST00000515460 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.04□□□□□ -0.32
NUP54-218ENST00000515460 LCE2DQ5TA82 110 aaPredicted RBP13.03□□□□□ -0.32
NUP54-218ENST00000515460 DPY19L2Q6NUT2 758 aa13.02□□□□□ -0.33
NUP54-218ENST00000515460 L3MBTL3Q96JM7 780 aaPredicted RBP13.02□□□□□ -0.33
NUP54-218ENST00000515460 C3orf67Q6ZVT6 689 aa12.99□□□□□ -0.33
NUP54-218ENST00000515460 EFCAB3Q8N7B9 438 aa12.99□□□□□ -0.33
NUP54-218ENST00000515460 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.97□□□□□ -0.33
NUP54-218ENST00000515460 ILDR1Q86SU0 546 aaPredicted RBP12.97□□□□□ -0.33
NUP54-218ENST00000515460 ZFP91Q96JP5 570 aaPredicted RBP12.97□□□□□ -0.33
NUP54-218ENST00000515460 VGFO15240 615 aaPredicted RBP12.95□□□□□ -0.34
NUP54-218ENST00000515460 G3V3G9 751 aa12.93□□□□□ -0.34
NUP54-218ENST00000515460 ECM2O94769 699 aaPredicted RBP12.93□□□□□ -0.34
NUP54-218ENST00000515460 PLSCR2Q9NRY7 297 aa12.93□□□□□ -0.34
NUP54-218ENST00000515460 ST18O60284 1047 aa12.91□□□□□ -0.34
NUP54-218ENST00000515460 BOLA1Q9Y3E2 137 aa12.91□□□□□ -0.34
NUP54-218ENST00000515460 PKD2Q13563 968 aa12.87□□□□□ -0.35
NUP54-218ENST00000515460 SNPHO15079 494 aa12.86□□□□□ -0.35
NUP54-218ENST00000515460 BCL11BQ9C0K0 894 aaPredicted RBP12.85□□□□□ -0.35
NUP54-218ENST00000515460 TAOK2Q9UL54 1235 aa12.85□□□□□ -0.35
NUP54-218ENST00000515460 SOX12O15370 315 aa12.84□□□□□ -0.35
NUP54-218ENST00000515460 PHF8Q9UPP1 1060 aa12.83□□□□□ -0.36
NUP54-218ENST00000515460 STK24Q9Y6E0 443 aa12.83□□□□□ -0.36
NUP54-218ENST00000515460 RGL2O15211 777 aa12.82□□□□□ -0.36
NUP54-218ENST00000515460 STK25O00506 426 aa12.8□□□□□ -0.36
NUP54-218ENST00000515460 PCDH10Q9P2E7 1040 aa12.8□□□□□ -0.36
NUP54-218ENST00000515460 MS4A4AQ96JQ5 239 aa12.78□□□□□ -0.36
NUP54-218ENST00000515460 MARVELD3Q96A59 401 aa12.76□□□□□ -0.37
NUP54-218ENST00000515460 TMEM121BQ9BXQ6 578 aaPredicted RBP12.76□□□□□ -0.37
NUP54-218ENST00000515460 CDAN1Q8IWY9 1227 aa12.74□□□□□ -0.37
NUP54-218ENST00000515460 MICALL2Q8IY33 904 aa12.74□□□□□ -0.37
NUP54-218ENST00000515460 NLRP6P59044 892 aa12.73□□□□□ -0.37
NUP54-218ENST00000515460 FBXO22Q8NEZ5 403 aa12.68□□□□□ -0.38
NUP54-218ENST00000515460 MFRPQ9BY79 579 aa12.68□□□□□ -0.38
NUP54-218ENST00000515460 EMP3P54852 163 aa12.66□□□□□ -0.38
NUP54-218ENST00000515460 TMEM92Q6UXU6 159 aa12.66□□□□□ -0.38
NUP54-218ENST00000515460 HOXB3P14651 431 aaPredicted RBP12.65□□□□□ -0.38
NUP54-218ENST00000515460 ZNF710Q8N1W2 664 aa12.63□□□□□ -0.39
NUP54-218ENST00000515460 DNAJC5Q9H3Z4 198 aa12.63□□□□□ -0.39
NUP54-218ENST00000515460 DOK7Q18PE1 504 aa12.6□□□□□ -0.39
NUP54-218ENST00000515460 FAM205CA6NFA0 338 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms