RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 CFAP53Q96M91 514 aa5.7□□□□□ -1.5
VCAN-209ENST00000513016 CARMIL2Q6F5E8 1435 aa5.7□□□□□ -1.5
VCAN-209ENST00000513016 POGKQ9P215 609 aa5.69□□□□□ -1.5
VCAN-209ENST00000513016 EIF4G2P78344 907 aaKnown RBP eCLIP5.68□□□□□ -1.5
VCAN-209ENST00000513016 LMOD2Q6P5Q4 547 aa5.68□□□□□ -1.5
VCAN-209ENST00000513016 WRNQ14191 1432 aaPredicted RBP eCLIP5.68□□□□□ -1.5
VCAN-209ENST00000513016 NPHP1O15259 732 aa5.68□□□□□ -1.5
VCAN-209ENST00000513016 MYH16Q9H6N6 1097 aa5.68□□□□□ -1.5
VCAN-209ENST00000513016 CLIP1P30622 1438 aa5.68□□□□□ -1.5
VCAN-209ENST00000513016 PLEKHG5O94827 1062 aa5.67□□□□□ -1.5
VCAN-209ENST00000513016 TMC1Q8TDI8 760 aa5.67□□□□□ -1.5
VCAN-209ENST00000513016 UPF2Q9HAU5 1272 aaKnown RBP5.67□□□□□ -1.5
VCAN-209ENST00000513016 MLECQ14165 292 aa5.66□□□□□ -1.5
VCAN-209ENST00000513016 ARXQ96QS3 562 aa5.65□□□□□ -1.5
VCAN-209ENST00000513016 BAZ1AQ9NRL2 1556 aaPredicted RBP5.65□□□□□ -1.5
VCAN-209ENST00000513016 NUDCQ9Y266 331 aa5.65□□□□□ -1.51
VCAN-209ENST00000513016 PNNQ9H307 717 aaKnown RBP5.65□□□□□ -1.51
VCAN-209ENST00000513016 RRP7BPQ9NSQ0 103 aa5.64□□□□□ -1.51
VCAN-209ENST00000513016 GOLGA3Q08378 1498 aa5.64□□□□□ -1.51
VCAN-209ENST00000513016 CCNB3Q8WWL7 1395 aa5.64□□□□□ -1.51
VCAN-209ENST00000513016 CDK11BP21127 795 aaKnown RBP5.64□□□□□ -1.51
VCAN-209ENST00000513016 EFCAB2Q5VUJ9 269 aa5.64□□□□□ -1.51
VCAN-209ENST00000513016 HSP90AA1P07900 732 aaKnown RBP5.64□□□□□ -1.51
VCAN-209ENST00000513016 CECR2Q9BXF3 1484 aa5.64□□□□□ -1.51
VCAN-209ENST00000513016 EIF5BO60841 1220 aaKnown RBP5.64□□□□□ -1.51
VCAN-209ENST00000513016 RGL3Q3MIN7 710 aa5.63□□□□□ -1.51
VCAN-209ENST00000513016 CEP164Q9UPV0 1460 aa5.63□□□□□ -1.51
VCAN-209ENST00000513016 EID1Q9Y6B2 187 aa5.63□□□□□ -1.51
VCAN-209ENST00000513016 FHAD1B1AJZ9 1412 aa5.62□□□□□ -1.51
VCAN-209ENST00000513016 SMARCA2P51531 1590 aa5.62□□□□□ -1.51
VCAN-209ENST00000513016 OSCARQ8IYS5 282 aa5.61□□□□□ -1.51
VCAN-209ENST00000513016 CARMIL1Q5VZK9 1371 aa5.61□□□□□ -1.51
VCAN-209ENST00000513016 ANP32BQ92688 251 aaKnown RBP5.61□□□□□ -1.51
VCAN-209ENST00000513016 TMX4Q9H1E5 349 aaPredicted RBP5.61□□□□□ -1.51
VCAN-209ENST00000513016 KNSTRNQ9Y448 316 aa5.61□□□□□ -1.51
VCAN-209ENST00000513016 MAPK8IP3Q9UPT6 1336 aa5.61□□□□□ -1.51
VCAN-209ENST00000513016 CHMP4BQ9H444 224 aaKnown RBP5.6□□□□□ -1.51
VCAN-209ENST00000513016 SENP3Q9H4L4 574 aaPredicted RBP5.6□□□□□ -1.51
VCAN-209ENST00000513016 DCAF1Q9Y4B6 1507 aa5.6□□□□□ -1.51
VCAN-209ENST00000513016 EIF4G1Q04637 1599 aaKnown RBP5.6□□□□□ -1.51
VCAN-209ENST00000513016 GGT6Q6P531 493 aa5.6□□□□□ -1.51
VCAN-209ENST00000513016 CUX2O14529 1486 aa5.6□□□□□ -1.51
VCAN-209ENST00000513016 CHMP4AQ9BY43 222 aa5.59□□□□□ -1.51
VCAN-209ENST00000513016 ANP32AP39687 249 aaKnown RBP5.59□□□□□ -1.51
VCAN-209ENST00000513016 SOGA1O94964 1423 aa5.59□□□□□ -1.51
VCAN-209ENST00000513016 PPM1GO15355 546 aaPredicted RBP5.59□□□□□ -1.51
VCAN-209ENST00000513016 FAM9BQ8IZU0 186 aa5.59□□□□□ -1.51
VCAN-209ENST00000513016 RSPH4AQ5TD94 716 aa5.59□□□□□ -1.52
VCAN-209ENST00000513016 CCDC9Q9Y3X0 531 aaKnown RBP5.58□□□□□ -1.52
VCAN-209ENST00000513016 GOLGA2Q08379 1002 aa5.58□□□□□ -1.52
VCAN-209ENST00000513016 CARD11Q9BXL7 1154 aa5.58□□□□□ -1.52
VCAN-209ENST00000513016 HDGFL2Q7Z4V5 671 aaPredicted RBP5.57□□□□□ -1.52
VCAN-209ENST00000513016 DCAF8L1A6NGE4 600 aa5.57□□□□□ -1.52
VCAN-209ENST00000513016 CSB-PGBD3P0DP91 1061 aa5.57□□□□□ -1.52
VCAN-209ENST00000513016 HNRNPUQ00839 825 aaKnown RBP eCLIP5.57□□□□□ -1.52
VCAN-209ENST00000513016 MRS2Q9HD23 443 aa5.57□□□□□ -1.52
VCAN-209ENST00000513016 SALL2Q9Y467 1007 aaPredicted RBP5.56□□□□□ -1.52
VCAN-209ENST00000513016 MS4A1P11836 297 aa5.56□□□□□ -1.52
VCAN-209ENST00000513016 DDX10Q13206 875 aaKnown RBP5.56□□□□□ -1.52
VCAN-209ENST00000513016 SRPK2P78362 688 aaKnown RBP5.56□□□□□ -1.52
VCAN-209ENST00000513016 TMF1P82094 1093 aa5.56□□□□□ -1.52
VCAN-209ENST00000513016 CADPSQ9ULU8 1353 aa5.55□□□□□ -1.52
VCAN-209ENST00000513016 ABCC8Q09428 1581 aa5.55□□□□□ -1.52
VCAN-209ENST00000513016 CYB5RLQ6IPT4 315 aa5.55□□□□□ -1.52
VCAN-209ENST00000513016 CASC1Q6TDU7 716 aa5.55□□□□□ -1.52
VCAN-209ENST00000513016 TNIKQ9UKE5 1360 aa5.55□□□□□ -1.52
VCAN-209ENST00000513016 FOXD1Q16676 465 aa5.55□□□□□ -1.52
VCAN-209ENST00000513016 RTF1Q92541 710 aaKnown RBP5.54□□□□□ -1.52
VCAN-209ENST00000513016 JPH4Q96JJ6 628 aa5.54□□□□□ -1.52
VCAN-209ENST00000513016 CEP162Q5TB80 1403 aa5.54□□□□□ -1.52
VCAN-209ENST00000513016 PAK3O75914 559 aaPredicted RBP5.53□□□□□ -1.52
VCAN-209ENST00000513016 SPAG9O60271 1321 aaKnown RBP5.53□□□□□ -1.52
VCAN-209ENST00000513016 NCLP19338 710 aaKnown RBP5.53□□□□□ -1.52
VCAN-209ENST00000513016 TDRD9Q8NDG6 1382 aaKnown RBP5.53□□□□□ -1.52
VCAN-209ENST00000513016 OS9Q13438 667 aaPredicted RBP5.52□□□□□ -1.53
VCAN-209ENST00000513016 LAS1LQ9Y4W2 734 aaKnown RBP5.52□□□□□ -1.53
VCAN-209ENST00000513016 FMN1Q68DA7 1419 aa5.52□□□□□ -1.53
VCAN-209ENST00000513016 WASHC2CQ9Y4E1 1318 aa5.52□□□□□ -1.53
VCAN-209ENST00000513016 U2SURPO15042 1029 aaKnown RBP5.52□□□□□ -1.53
VCAN-209ENST00000513016 KIF3BO15066 747 aa5.52□□□□□ -1.53
VCAN-209ENST00000513016 ANKRD30AQ9BXX3 1397 aa5.52□□□□□ -1.53
VCAN-209ENST00000513016 HDAC5Q9UQL6 1122 aa5.52□□□□□ -1.53
VCAN-209ENST00000513016 CALD1Q05682 793 aaKnown RBP5.51□□□□□ -1.53
VCAN-209ENST00000513016 MEX3CQ5U5Q3 659 aaKnown RBP5.51□□□□□ -1.53
VCAN-209ENST00000513016 CCDC136Q96JN2 1154 aa5.51□□□□□ -1.53
VCAN-209ENST00000513016 FTSJ3Q8IY81 847 aaKnown RBP5.51□□□□□ -1.53
VCAN-209ENST00000513016 STK26Q9P289 416 aa5.51□□□□□ -1.53
VCAN-209ENST00000513016 G3V3G9 751 aa5.5□□□□□ -1.53
VCAN-209ENST00000513016 ZRSR1Q15695 479 aaKnown RBP5.5□□□□□ -1.53
VCAN-209ENST00000513016 DCAF8Q5TAQ9 597 aa5.5□□□□□ -1.53
VCAN-209ENST00000513016 NGDNQ8NEJ9 315 aaKnown RBP5.5□□□□□ -1.53
VCAN-209ENST00000513016 MORC1Q86VD1 984 aa5.5□□□□□ -1.53
VCAN-209ENST00000513016 DCAF11Q8TEB1 546 aa5.5□□□□□ -1.53
VCAN-209ENST00000513016 PTPRGP23470 1445 aa5.49□□□□□ -1.53
VCAN-209ENST00000513016 MYO15BQ96JP2 1530 aa5.49□□□□□ -1.53
VCAN-209ENST00000513016 TIMELESSQ9UNS1 1208 aa5.49□□□□□ -1.53
VCAN-209ENST00000513016 SOX12O15370 315 aa5.49□□□□□ -1.53
VCAN-209ENST00000513016 CFAP44Q96MT7 982 aa5.49□□□□□ -1.53
VCAN-209ENST00000513016 TERF2IPQ9NYB0 399 aa5.49□□□□□ -1.53
VCAN-209ENST00000513016 EIF3AQ14152 1382 aaKnown RBP5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms