RNA–Protein interactions for RNA: ENST00000512380.1

PDLIM3-208, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 764 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-208ENST00000512380 TSPYL2Q9H2G4 693 aaPredicted RBP14.43□□□□□ -0.1
PDLIM3-208ENST00000512380 CCDC61Q9Y6R9 512 aa14.41□□□□□ -0.1
PDLIM3-208ENST00000512380 GALR2O43603 387 aaPredicted RBP14.39□□□□□ -0.11
PDLIM3-208ENST00000512380 NUBP1P53384 320 aa14.39□□□□□ -0.11
PDLIM3-208ENST00000512380 POTEIP0CG38 1075 aa14.35□□□□□ -0.11
PDLIM3-208ENST00000512380 DCBLD2Q96PD2 775 aa14.31□□□□□ -0.12
PDLIM3-208ENST00000512380 MS4A3Q96HJ5 214 aa14.3□□□□□ -0.12
PDLIM3-208ENST00000512380 FAM212AQ96EL1 285 aa14.29□□□□□ -0.12
PDLIM3-208ENST00000512380 KIF12Q96FN5 646 aa14.29□□□□□ -0.12
PDLIM3-208ENST00000512380 KLHL34Q8N239 644 aa14.24□□□□□ -0.13
PDLIM3-208ENST00000512380 MAP3K13O43283 966 aa14.2□□□□□ -0.14
PDLIM3-208ENST00000512380 IFNLR1Q8IU57 520 aaPredicted RBP14.19□□□□□ -0.14
PDLIM3-208ENST00000512380 SGIP1Q9BQI5 828 aa14.16□□□□□ -0.14
PDLIM3-208ENST00000512380 PLCB2Q00722 1185 aa14.15□□□□□ -0.14
PDLIM3-208ENST00000512380 DCAF8Q5TAQ9 597 aa14.14□□□□□ -0.15
PDLIM3-208ENST00000512380 ASTLQ6HA08 431 aaPredicted RBP14.14□□□□□ -0.15
PDLIM3-208ENST00000512380 ATMINO43313 823 aaPredicted RBP14.11□□□□□ -0.15
PDLIM3-208ENST00000512380 SPOCK2Q92563 424 aa14.11□□□□□ -0.15
PDLIM3-208ENST00000512380 PCDHB13Q9Y5F0 798 aa14.11□□□□□ -0.15
PDLIM3-208ENST00000512380 GSE1Q14687 1217 aa14.1□□□□□ -0.15
PDLIM3-208ENST00000512380 LHX8Q68G74 356 aa14.08□□□□□ -0.16
PDLIM3-208ENST00000512380 TRPC6Q9Y210 931 aa14.08□□□□□ -0.16
PDLIM3-208ENST00000512380 TIE1P35590 1138 aa14.07□□□□□ -0.16
PDLIM3-208ENST00000512380 PELP1Q8IZL8 1130 aaKnown RBP14.06□□□□□ -0.16
PDLIM3-208ENST00000512380 BMP2KQ9NSY1 1161 aaPredicted RBP14.06□□□□□ -0.16
PDLIM3-208ENST00000512380 PYGBP11216 843 aa14.04□□□□□ -0.16
PDLIM3-208ENST00000512380 PRKCSHP14314 528 aaPredicted RBP14.04□□□□□ -0.16
PDLIM3-208ENST00000512380 HAP1P54257 671 aaPredicted RBP14.04□□□□□ -0.16
PDLIM3-208ENST00000512380 IFNL1Q8IU54 200 aa14.04□□□□□ -0.16
PDLIM3-208ENST00000512380 ATN1P54259 1190 aaPredicted RBP14.02□□□□□ -0.17
PDLIM3-208ENST00000512380 SLC39A7Q92504 469 aa14□□□□□ -0.17
PDLIM3-208ENST00000512380 TTLL13PA6NNM8 815 aa13.99□□□□□ -0.17
PDLIM3-208ENST00000512380 BCANQ96GW7 911 aa13.99□□□□□ -0.17
PDLIM3-208ENST00000512380 C7P10643 843 aa13.97□□□□□ -0.17
PDLIM3-208ENST00000512380 CHRM1P11229 460 aaPredicted RBP13.97□□□□□ -0.17
PDLIM3-208ENST00000512380 METRNQ9UJH8 293 aa13.97□□□□□ -0.17
PDLIM3-208ENST00000512380 CIZ1Q9ULV3 898 aaPredicted RBP13.93□□□□□ -0.18
PDLIM3-208ENST00000512380 ZNF467Q7Z7K2 595 aaPredicted RBP13.91□□□□□ -0.18
PDLIM3-208ENST00000512380 PCDHB8Q9UN66 801 aa13.9□□□□□ -0.18
PDLIM3-208ENST00000512380 TMEM106CQ9BVX2 250 aa13.89□□□□□ -0.19
PDLIM3-208ENST00000512380 TAOK2Q9UL54 1235 aa13.89□□□□□ -0.19
PDLIM3-208ENST00000512380 TRIM35Q9UPQ4 493 aa13.89□□□□□ -0.19
PDLIM3-208ENST00000512380 POTEB2H3BUK9 544 aa13.87□□□□□ -0.19
PDLIM3-208ENST00000512380 DCAF8L2P0C7V8 631 aa13.85□□□□□ -0.19
PDLIM3-208ENST00000512380 IER5LQ5T953 404 aa13.85□□□□□ -0.19
PDLIM3-208ENST00000512380 TRIM41Q8WV44 630 aa13.85□□□□□ -0.19
PDLIM3-208ENST00000512380 POTEFA5A3E0 1075 aa13.81□□□□□ -0.2
PDLIM3-208ENST00000512380 VSIG10Q8N0Z9 540 aa13.76□□□□□ -0.21
PDLIM3-208ENST00000512380 OTUD5Q96G74 571 aa13.76□□□□□ -0.21
PDLIM3-208ENST00000512380 COLQQ9Y215 455 aaPredicted RBP13.75□□□□□ -0.21
PDLIM3-208ENST00000512380 SEC24BO95487 1268 aa13.74□□□□□ -0.21
PDLIM3-208ENST00000512380 POTEJP0CG39 1038 aa13.74□□□□□ -0.21
PDLIM3-208ENST00000512380 PSEN1P49768 467 aa13.74□□□□□ -0.21
PDLIM3-208ENST00000512380 PDAP1Q13442 181 aaKnown RBP13.74□□□□□ -0.21
PDLIM3-208ENST00000512380 IRX5P78411 483 aaPredicted RBP13.7□□□□□ -0.22
PDLIM3-208ENST00000512380 TPRNQ4KMQ1 711 aa13.7□□□□□ -0.22
PDLIM3-208ENST00000512380 MAMSTRQ6ZN01 415 aa13.69□□□□□ -0.22
PDLIM3-208ENST00000512380 PLCG2P16885 1265 aa13.67□□□□□ -0.22
PDLIM3-208ENST00000512380 RNF25Q96BH1 459 aaPredicted RBP13.65□□□□□ -0.22
PDLIM3-208ENST00000512380 OCEL1Q9H607 264 aa13.63□□□□□ -0.23
PDLIM3-208ENST00000512380 SCUBE2Q9NQ36 999 aa13.63□□□□□ -0.23
PDLIM3-208ENST00000512380 GOLGA2Q08379 1002 aa13.62□□□□□ -0.23
PDLIM3-208ENST00000512380 RIOK3O14730 519 aaKnown RBP13.61□□□□□ -0.23
PDLIM3-208ENST00000512380 MKRN3Q13064 507 aaKnown RBP13.61□□□□□ -0.23
PDLIM3-208ENST00000512380 PDCD7Q8N8D1 485 aaKnown RBP13.56□□□□□ -0.24
PDLIM3-208ENST00000512380 CABP2Q9NPB3 220 aa13.56□□□□□ -0.24
PDLIM3-208ENST00000512380 VGFO15240 615 aaPredicted RBP13.55□□□□□ -0.24
PDLIM3-208ENST00000512380 PKD2Q13563 968 aa13.55□□□□□ -0.24
PDLIM3-208ENST00000512380 ILDR1Q86SU0 546 aaPredicted RBP13.55□□□□□ -0.24
PDLIM3-208ENST00000512380 KDM2AQ9Y2K7 1162 aa13.53□□□□□ -0.24
PDLIM3-208ENST00000512380 ECM2O94769 699 aaPredicted RBP13.52□□□□□ -0.25
PDLIM3-208ENST00000512380 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.52□□□□□ -0.25
PDLIM3-208ENST00000512380 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.5□□□□□ -0.25
PDLIM3-208ENST00000512380 ZFP91Q96JP5 570 aaPredicted RBP13.5□□□□□ -0.25
PDLIM3-208ENST00000512380 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.47□□□□□ -0.25
PDLIM3-208ENST00000512380 EFCAB3Q8N7B9 438 aa13.44□□□□□ -0.26
PDLIM3-208ENST00000512380 L3MBTL3Q96JM7 780 aaPredicted RBP13.42□□□□□ -0.26
PDLIM3-208ENST00000512380 RGL2O15211 777 aa13.41□□□□□ -0.26
PDLIM3-208ENST00000512380 PAXIP1Q6ZW49 1069 aaPredicted RBP13.41□□□□□ -0.26
PDLIM3-208ENST00000512380 BBXQ8WY36 941 aaPredicted RBP13.41□□□□□ -0.26
PDLIM3-208ENST00000512380 CFAP44Q96MT7 982 aa13.4□□□□□ -0.26
PDLIM3-208ENST00000512380 SLAIN1Q8ND83 568 aa13.39□□□□□ -0.27
PDLIM3-208ENST00000512380 DPY19L2Q6NUT2 758 aa13.37□□□□□ -0.27
PDLIM3-208ENST00000512380 BCL11BQ9C0K0 894 aaPredicted RBP13.37□□□□□ -0.27
PDLIM3-208ENST00000512380 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.37□□□□□ -0.27
PDLIM3-208ENST00000512380 SOX12O15370 315 aa13.36□□□□□ -0.27
PDLIM3-208ENST00000512380 C3orf67Q6ZVT6 689 aa13.35□□□□□ -0.27
PDLIM3-208ENST00000512380 STK25O00506 426 aa13.32□□□□□ -0.28
PDLIM3-208ENST00000512380 BOLA1Q9Y3E2 137 aa13.32□□□□□ -0.28
PDLIM3-208ENST00000512380 STK24Q9Y6E0 443 aa13.32□□□□□ -0.28
PDLIM3-208ENST00000512380 LCE2DQ5TA82 110 aaPredicted RBP13.31□□□□□ -0.28
PDLIM3-208ENST00000512380 TIMELESSQ9UNS1 1208 aa13.29□□□□□ -0.28
PDLIM3-208ENST00000512380 G3V3G9 751 aa13.28□□□□□ -0.28
PDLIM3-208ENST00000512380 MS4A4AQ96JQ5 239 aa13.28□□□□□ -0.28
PDLIM3-208ENST00000512380 PHF8Q9UPP1 1060 aa13.28□□□□□ -0.28
PDLIM3-208ENST00000512380 TMEM121BQ9BXQ6 578 aaPredicted RBP13.27□□□□□ -0.29
PDLIM3-208ENST00000512380 NLRP6P59044 892 aa13.24□□□□□ -0.29
PDLIM3-208ENST00000512380 FAM163AQ96GL9 167 aaPredicted RBP13.24□□□□□ -0.29
PDLIM3-208ENST00000512380 POTEMA6NI47 508 aa13.23□□□□□ -0.29
PDLIM3-208ENST00000512380 TULP1O00294 542 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms