RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 GALR2O43603 387 aaPredicted RBP17.2■□□□□ 0.34
NUP54-209ENST00000510569 POTEIP0CG38 1075 aa17.16■□□□□ 0.34
NUP54-209ENST00000510569 FAM212AQ96EL1 285 aa17.1■□□□□ 0.33
NUP54-209ENST00000510569 KIF12Q96FN5 646 aa17.1■□□□□ 0.33
NUP54-209ENST00000510569 MS4A3Q96HJ5 214 aa17.1■□□□□ 0.33
NUP54-209ENST00000510569 DCBLD2Q96PD2 775 aa17.1■□□□□ 0.33
NUP54-209ENST00000510569 KLHL34Q8N239 644 aa17.06■□□□□ 0.32
NUP54-209ENST00000510569 IFNLR1Q8IU57 520 aaPredicted RBP17.03■□□□□ 0.32
NUP54-209ENST00000510569 MAP3K13O43283 966 aa17■□□□□ 0.31
NUP54-209ENST00000510569 SGIP1Q9BQI5 828 aa16.95■□□□□ 0.3
NUP54-209ENST00000510569 DCAF8Q5TAQ9 597 aa16.94■□□□□ 0.3
NUP54-209ENST00000510569 ASTLQ6HA08 431 aaPredicted RBP16.93■□□□□ 0.3
NUP54-209ENST00000510569 SPOCK2Q92563 424 aa16.91■□□□□ 0.3
NUP54-209ENST00000510569 GSE1Q14687 1217 aa16.89■□□□□ 0.29
NUP54-209ENST00000510569 PCDHB13Q9Y5F0 798 aa16.89■□□□□ 0.29
NUP54-209ENST00000510569 ATMINO43313 823 aaPredicted RBP16.87■□□□□ 0.29
NUP54-209ENST00000510569 TRPC6Q9Y210 931 aa16.86■□□□□ 0.29
NUP54-209ENST00000510569 TIE1P35590 1138 aa16.84■□□□□ 0.29
NUP54-209ENST00000510569 PELP1Q8IZL8 1130 aaKnown RBP16.84■□□□□ 0.29
NUP54-209ENST00000510569 PYGBP11216 843 aa16.82■□□□□ 0.28
NUP54-209ENST00000510569 IFNL1Q8IU54 200 aa16.82■□□□□ 0.28
NUP54-209ENST00000510569 BMP2KQ9NSY1 1161 aaPredicted RBP16.82■□□□□ 0.28
NUP54-209ENST00000510569 LHX8Q68G74 356 aa16.81■□□□□ 0.28
NUP54-209ENST00000510569 ATN1P54259 1190 aaPredicted RBP16.78■□□□□ 0.28
NUP54-209ENST00000510569 CHRM1P11229 460 aaPredicted RBP16.75■□□□□ 0.27
NUP54-209ENST00000510569 TTLL13PA6NNM8 815 aa16.73■□□□□ 0.27
NUP54-209ENST00000510569 SLC39A7Q92504 469 aa16.73■□□□□ 0.27
NUP54-209ENST00000510569 C7P10643 843 aa16.69■□□□□ 0.26
NUP54-209ENST00000510569 METRNQ9UJH8 293 aa16.69■□□□□ 0.26
NUP54-209ENST00000510569 CIZ1Q9ULV3 898 aaPredicted RBP16.69■□□□□ 0.26
NUP54-209ENST00000510569 PCDHB8Q9UN66 801 aa16.66■□□□□ 0.26
NUP54-209ENST00000510569 ZNF467Q7Z7K2 595 aaPredicted RBP16.65■□□□□ 0.26
NUP54-209ENST00000510569 TMEM106CQ9BVX2 250 aa16.62■□□□□ 0.25
NUP54-209ENST00000510569 TRIM35Q9UPQ4 493 aa16.61■□□□□ 0.25
NUP54-209ENST00000510569 POTEB2H3BUK9 544 aa16.59■□□□□ 0.25
NUP54-209ENST00000510569 TRIM41Q8WV44 630 aa16.59■□□□□ 0.25
NUP54-209ENST00000510569 IER5LQ5T953 404 aa16.56■□□□□ 0.24
NUP54-209ENST00000510569 POTEFA5A3E0 1075 aa16.54■□□□□ 0.24
NUP54-209ENST00000510569 PSEN1P49768 467 aa16.46■□□□□ 0.23
NUP54-209ENST00000510569 PDAP1Q13442 181 aaKnown RBP16.46■□□□□ 0.23
NUP54-209ENST00000510569 COLQQ9Y215 455 aaPredicted RBP16.46■□□□□ 0.23
NUP54-209ENST00000510569 OTUD5Q96G74 571 aa16.45■□□□□ 0.22
NUP54-209ENST00000510569 POTEJP0CG39 1038 aa16.44■□□□□ 0.22
NUP54-209ENST00000510569 SEC24BO95487 1268 aa16.42■□□□□ 0.22
NUP54-209ENST00000510569 IRX5P78411 483 aaPredicted RBP16.39■□□□□ 0.21
NUP54-209ENST00000510569 RNF25Q96BH1 459 aaPredicted RBP16.36■□□□□ 0.21
NUP54-209ENST00000510569 MAMSTRQ6ZN01 415 aa16.35■□□□□ 0.21
NUP54-209ENST00000510569 PLCG2P16885 1265 aa16.34■□□□□ 0.21
NUP54-209ENST00000510569 RIOK3O14730 519 aaKnown RBP16.32■□□□□ 0.2
NUP54-209ENST00000510569 OCEL1Q9H607 264 aa16.31■□□□□ 0.2
NUP54-209ENST00000510569 GOLGA2Q08379 1002 aa16.3■□□□□ 0.2
NUP54-209ENST00000510569 MKRN3Q13064 507 aaKnown RBP16.28■□□□□ 0.2
NUP54-209ENST00000510569 SCUBE2Q9NQ36 999 aa16.28■□□□□ 0.2
NUP54-209ENST00000510569 PKD2Q13563 968 aa16.26■□□□□ 0.19
NUP54-209ENST00000510569 PDCD7Q8N8D1 485 aaKnown RBP16.24■□□□□ 0.19
NUP54-209ENST00000510569 CABP2Q9NPB3 220 aa16.24■□□□□ 0.19
NUP54-209ENST00000510569 VGFO15240 615 aaPredicted RBP16.23■□□□□ 0.19
NUP54-209ENST00000510569 ECM2O94769 699 aaPredicted RBP16.22■□□□□ 0.19
NUP54-209ENST00000510569 ILDR1Q86SU0 546 aaPredicted RBP16.22■□□□□ 0.19
NUP54-209ENST00000510569 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.18■□□□□ 0.18
NUP54-209ENST00000510569 ZFP91Q96JP5 570 aaPredicted RBP16.18■□□□□ 0.18
NUP54-209ENST00000510569 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.18■□□□□ 0.18
NUP54-209ENST00000510569 TAOK2Q9UL54 1235 aa16.13■□□□□ 0.17
NUP54-209ENST00000510569 RGL2O15211 777 aa16.1■□□□□ 0.17
NUP54-209ENST00000510569 EFCAB3Q8N7B9 438 aa16.1■□□□□ 0.17
NUP54-209ENST00000510569 L3MBTL3Q96JM7 780 aaPredicted RBP16.06■□□□□ 0.16
NUP54-209ENST00000510569 BCL11BQ9C0K0 894 aaPredicted RBP16.03■□□□□ 0.16
NUP54-209ENST00000510569 SOX12O15370 315 aa16.01■□□□□ 0.15
NUP54-209ENST00000510569 DPY19L2Q6NUT2 758 aa16.01■□□□□ 0.15
NUP54-209ENST00000510569 SLAIN1Q8ND83 568 aa16■□□□□ 0.15
NUP54-209ENST00000510569 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.99■□□□□ 0.15
NUP54-209ENST00000510569 STK25O00506 426 aa15.97■□□□□ 0.15
NUP54-209ENST00000510569 STK24Q9Y6E0 443 aa15.97■□□□□ 0.15
NUP54-209ENST00000510569 C3orf67Q6ZVT6 689 aa15.96■□□□□ 0.15
NUP54-209ENST00000510569 BOLA1Q9Y3E2 137 aa15.94■□□□□ 0.14
NUP54-209ENST00000510569 MS4A4AQ96JQ5 239 aa15.92■□□□□ 0.14
NUP54-209ENST00000510569 PHF8Q9UPP1 1060 aa15.92■□□□□ 0.14
NUP54-209ENST00000510569 LCE2DQ5TA82 110 aaPredicted RBP15.91■□□□□ 0.14
NUP54-209ENST00000510569 TMEM121BQ9BXQ6 578 aaPredicted RBP15.89■□□□□ 0.13
NUP54-209ENST00000510569 G3V3G9 751 aa15.87■□□□□ 0.13
NUP54-209ENST00000510569 FBXO22Q8NEZ5 403 aa15.87■□□□□ 0.13
NUP54-209ENST00000510569 NLRP6P59044 892 aa15.86■□□□□ 0.13
NUP54-209ENST00000510569 MFRPQ9BY79 579 aa15.85■□□□□ 0.13
NUP54-209ENST00000510569 FAM163AQ96GL9 167 aaPredicted RBP15.83■□□□□ 0.12
NUP54-209ENST00000510569 MICALL2Q8IY33 904 aa15.81■□□□□ 0.12
NUP54-209ENST00000510569 HS6ST3Q8IZP7 471 aa15.81■□□□□ 0.12
NUP54-209ENST00000510569 POTEMA6NI47 508 aa15.79■□□□□ 0.12
NUP54-209ENST00000510569 SNPHO15079 494 aa15.77■□□□□ 0.12
NUP54-209ENST00000510569 POTEGQ6S5H5 508 aa15.77■□□□□ 0.12
NUP54-209ENST00000510569 ST18O60284 1047 aa15.73■□□□□ 0.11
NUP54-209ENST00000510569 CHGAP10645 457 aaKnown RBP15.69■□□□□ 0.1
NUP54-209ENST00000510569 DNAJC5Q9H3Z4 198 aa15.69■□□□□ 0.1
NUP54-209ENST00000510569 TMEM92Q6UXU6 159 aa15.67■□□□□ 0.1
NUP54-209ENST00000510569 HOXB3P14651 431 aaPredicted RBP15.6■□□□□ 0.09
NUP54-209ENST00000510569 NKX1-1Q15270 411 aaPredicted RBP15.57■□□□□ 0.08
NUP54-209ENST00000510569 PPP1R37O75864 691 aa15.56■□□□□ 0.08
NUP54-209ENST00000510569 PCDH10Q9P2E7 1040 aa15.56■□□□□ 0.08
NUP54-209ENST00000510569 DOK7Q18PE1 504 aa15.52■□□□□ 0.08
NUP54-209ENST00000510569 KIF3CO14782 793 aa15.5■□□□□ 0.07
NUP54-209ENST00000510569 AMER1Q5JTC6 1135 aaPredicted RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms