RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 CCDC61Q9Y6R9 512 aa14.55□□□□□ -0.08
SMC4-227ENST00000497984 RASEFQ8IZ41 740 aa14.53□□□□□ -0.08
SMC4-227ENST00000497984 MS4A3Q96HJ5 214 aa14.51□□□□□ -0.09
SMC4-227ENST00000497984 POTEMA6NI47 508 aa14.5□□□□□ -0.09
SMC4-227ENST00000497984 POTEB2H3BUK9 544 aa14.5□□□□□ -0.09
SMC4-227ENST00000497984 ZBTB47Q9UFB7 747 aaPredicted RBP14.46□□□□□ -0.09
SMC4-227ENST00000497984 NUBP1P53384 320 aa14.45□□□□□ -0.1
SMC4-227ENST00000497984 KIF12Q96FN5 646 aa14.45□□□□□ -0.1
SMC4-227ENST00000497984 FBXO3Q9UK99 471 aa14.45□□□□□ -0.1
SMC4-227ENST00000497984 POTEGQ6S5H5 508 aa14.43□□□□□ -0.1
SMC4-227ENST00000497984 PELP1Q8IZL8 1130 aaKnown RBP14.39□□□□□ -0.11
SMC4-227ENST00000497984 ASTLQ6HA08 431 aaPredicted RBP14.37□□□□□ -0.11
SMC4-227ENST00000497984 MAP3K13O43283 966 aa14.36□□□□□ -0.11
SMC4-227ENST00000497984 ATMINO43313 823 aaPredicted RBP14.35□□□□□ -0.11
SMC4-227ENST00000497984 VASPP50552 380 aaPredicted RBP14.32□□□□□ -0.12
SMC4-227ENST00000497984 TRPC6Q9Y210 931 aa14.32□□□□□ -0.12
SMC4-227ENST00000497984 FAM212AQ96EL1 285 aa14.28□□□□□ -0.12
SMC4-227ENST00000497984 BMP2KQ9NSY1 1161 aaPredicted RBP14.26□□□□□ -0.13
SMC4-227ENST00000497984 ATN1P54259 1190 aaPredicted RBP14.25□□□□□ -0.13
SMC4-227ENST00000497984 SGIP1Q9BQI5 828 aa14.24□□□□□ -0.13
SMC4-227ENST00000497984 TIE1P35590 1138 aa14.22□□□□□ -0.13
SMC4-227ENST00000497984 SLC39A7Q92504 469 aa14.22□□□□□ -0.13
SMC4-227ENST00000497984 METRNQ9UJH8 293 aa14.22□□□□□ -0.13
SMC4-227ENST00000497984 PCDHB13Q9Y5F0 798 aa14.21□□□□□ -0.13
SMC4-227ENST00000497984 C7P10643 843 aa14.2□□□□□ -0.14
SMC4-227ENST00000497984 PCDH10Q9P2E7 1040 aa14.2□□□□□ -0.14
SMC4-227ENST00000497984 DCAF8Q5TAQ9 597 aa14.18□□□□□ -0.14
SMC4-227ENST00000497984 IFNL1Q8IU54 200 aa14.17□□□□□ -0.14
SMC4-227ENST00000497984 TTLL13PA6NNM8 815 aa14.16□□□□□ -0.14
SMC4-227ENST00000497984 POTEJP0CG39 1038 aa14.16□□□□□ -0.14
SMC4-227ENST00000497984 KLHL34Q8N239 644 aa14.16□□□□□ -0.14
SMC4-227ENST00000497984 LCE2DQ5TA82 110 aaPredicted RBP14.15□□□□□ -0.14
SMC4-227ENST00000497984 PYGBP11216 843 aa14.11□□□□□ -0.15
SMC4-227ENST00000497984 POTEFA5A3E0 1075 aa14.1□□□□□ -0.15
SMC4-227ENST00000497984 IFNLR1Q8IU57 520 aaPredicted RBP14.1□□□□□ -0.15
SMC4-227ENST00000497984 TRIM35Q9UPQ4 493 aa14.06□□□□□ -0.16
SMC4-227ENST00000497984 GSE1Q14687 1217 aa14.05□□□□□ -0.16
SMC4-227ENST00000497984 TMEM106CQ9BVX2 250 aa14.02□□□□□ -0.17
SMC4-227ENST00000497984 PCDHB8Q9UN66 801 aa14□□□□□ -0.17
SMC4-227ENST00000497984 COLQQ9Y215 455 aaPredicted RBP14□□□□□ -0.17
SMC4-227ENST00000497984 IER5LQ5T953 404 aa13.99□□□□□ -0.17
SMC4-227ENST00000497984 SPOCK2Q92563 424 aa13.99□□□□□ -0.17
SMC4-227ENST00000497984 FAM163AQ96GL9 167 aaPredicted RBP13.99□□□□□ -0.17
SMC4-227ENST00000497984 CHRM1P11229 460 aaPredicted RBP13.96□□□□□ -0.17
SMC4-227ENST00000497984 MAMSTRQ6ZN01 415 aa13.94□□□□□ -0.18
SMC4-227ENST00000497984 SEC24BO95487 1268 aa13.93□□□□□ -0.18
SMC4-227ENST00000497984 ZNF467Q7Z7K2 595 aaPredicted RBP13.9□□□□□ -0.18
SMC4-227ENST00000497984 SCUBE2Q9NQ36 999 aa13.88□□□□□ -0.19
SMC4-227ENST00000497984 IRX5P78411 483 aaPredicted RBP13.87□□□□□ -0.19
SMC4-227ENST00000497984 CIZ1Q9ULV3 898 aaPredicted RBP13.87□□□□□ -0.19
SMC4-227ENST00000497984 PLCG2P16885 1265 aa13.81□□□□□ -0.2
SMC4-227ENST00000497984 PSEN1P49768 467 aa13.79□□□□□ -0.2
SMC4-227ENST00000497984 OCEL1Q9H607 264 aa13.78□□□□□ -0.2
SMC4-227ENST00000497984 CDAN1Q8IWY9 1227 aa13.75□□□□□ -0.21
SMC4-227ENST00000497984 PDAP1Q13442 181 aaKnown RBP13.74□□□□□ -0.21
SMC4-227ENST00000497984 PDCD7Q8N8D1 485 aaKnown RBP13.7□□□□□ -0.22
SMC4-227ENST00000497984 TRIM41Q8WV44 630 aa13.7□□□□□ -0.22
SMC4-227ENST00000497984 GOLGA2Q08379 1002 aa13.67□□□□□ -0.22
SMC4-227ENST00000497984 MKRN3Q13064 507 aaKnown RBP13.67□□□□□ -0.22
SMC4-227ENST00000497984 SLAIN1Q8ND83 568 aa13.64□□□□□ -0.23
SMC4-227ENST00000497984 ILDR1Q86SU0 546 aaPredicted RBP13.63□□□□□ -0.23
SMC4-227ENST00000497984 CABP2Q9NPB3 220 aa13.62□□□□□ -0.23
SMC4-227ENST00000497984 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.61□□□□□ -0.231e-7■■■■■ 39.2
SMC4-227ENST00000497984 RNF25Q96BH1 459 aaPredicted RBP13.59□□□□□ -0.23
SMC4-227ENST00000497984 L3MBTL3Q96JM7 780 aaPredicted RBP13.54□□□□□ -0.24
SMC4-227ENST00000497984 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.54□□□□□ -0.24
SMC4-227ENST00000497984 RIOK3O14730 519 aaKnown RBP13.53□□□□□ -0.24
SMC4-227ENST00000497984 DPY19L2Q6NUT2 758 aa13.52□□□□□ -0.25
SMC4-227ENST00000497984 ST18O60284 1047 aa13.5□□□□□ -0.25
SMC4-227ENST00000497984 MMRN1Q13201 1228 aa13.5□□□□□ -0.25
SMC4-227ENST00000497984 EFCAB3Q8N7B9 438 aa13.49□□□□□ -0.25
SMC4-227ENST00000497984 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.47□□□□□ -0.25
SMC4-227ENST00000497984 C3orf67Q6ZVT6 689 aa13.47□□□□□ -0.25
SMC4-227ENST00000497984 ZFP91Q96JP5 570 aaPredicted RBP13.47□□□□□ -0.25
SMC4-227ENST00000497984 VGFO15240 615 aaPredicted RBP13.46□□□□□ -0.25
SMC4-227ENST00000497984 SPNS2Q8IVW8 549 aa13.45□□□□□ -0.26
SMC4-227ENST00000497984 BOLA1Q9Y3E2 137 aa13.41□□□□□ -0.26
SMC4-227ENST00000497984 SNPHO15079 494 aa13.38□□□□□ -0.27
SMC4-227ENST00000497984 PKD2Q13563 968 aa13.37□□□□□ -0.27
SMC4-227ENST00000497984 TMEM121BQ9BXQ6 578 aaPredicted RBP13.36□□□□□ -0.27
SMC4-227ENST00000497984 SOX12O15370 315 aa13.35□□□□□ -0.27
SMC4-227ENST00000497984 ECM2O94769 699 aaPredicted RBP13.35□□□□□ -0.27
SMC4-227ENST00000497984 G3V3G9 751 aa13.33□□□□□ -0.28
SMC4-227ENST00000497984 MS4A4AQ96JQ5 239 aa13.33□□□□□ -0.28
SMC4-227ENST00000497984 PHF8Q9UPP1 1060 aa13.32□□□□□ -0.28
SMC4-227ENST00000497984 BCL11BQ9C0K0 894 aaPredicted RBP13.31□□□□□ -0.28
SMC4-227ENST00000497984 TAOK2Q9UL54 1235 aa13.3□□□□□ -0.28
SMC4-227ENST00000497984 RGL2O15211 777 aa13.29□□□□□ -0.28
SMC4-227ENST00000497984 MICALL2Q8IY33 904 aa13.27□□□□□ -0.29
SMC4-227ENST00000497984 STK24Q9Y6E0 443 aa13.26□□□□□ -0.29
SMC4-227ENST00000497984 FBXO22Q8NEZ5 403 aa13.24□□□□□ -0.29
SMC4-227ENST00000497984 MARVELD3Q96A59 401 aa13.24□□□□□ -0.29
SMC4-227ENST00000497984 STK25O00506 426 aa13.23□□□□□ -0.29
SMC4-227ENST00000497984 HOXB3P14651 431 aaPredicted RBP13.22□□□□□ -0.29
SMC4-227ENST00000497984 TMEM92Q6UXU6 159 aa13.22□□□□□ -0.29
SMC4-227ENST00000497984 NLRP6P59044 892 aa13.21□□□□□ -0.29
SMC4-227ENST00000497984 MFRPQ9BY79 579 aa13.2□□□□□ -0.3
SMC4-227ENST00000497984 EMP3P54852 163 aa13.14□□□□□ -0.31
SMC4-227ENST00000497984 POTEB3A0JP26 581 aa13.11□□□□□ -0.31
SMC4-227ENST00000497984 POTEBQ6S5H4 581 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms