RNA–Protein interactions for RNA: ENST00000496050.1

SSR3-208, Transcript of signal sequence receptor subunit 3, humanhuman

TSL 4 BASIC

Gene SSR3, Length 579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR3-208ENST00000496050 MNX1P50219 401 aaPredicted RBP12.78□□□□□ -0.36
SSR3-208ENST00000496050 SPRYD3Q8NCJ5 442 aa12.78□□□□□ -0.36
SSR3-208ENST00000496050 TAOK2Q9UL54 1235 aa12.78□□□□□ -0.36
SSR3-208ENST00000496050 PITPNM1O00562 1244 aa12.77□□□□□ -0.37
SSR3-208ENST00000496050 CHRM1P11229 460 aaPredicted RBP12.7□□□□□ -0.38
SSR3-208ENST00000496050 RIOK3O14730 519 aaKnown RBP12.69□□□□□ -0.38
SSR3-208ENST00000496050 HS6ST3Q8IZP7 471 aa12.69□□□□□ -0.38
SSR3-208ENST00000496050 RASEFQ8IZ41 740 aa12.67□□□□□ -0.38
SSR3-208ENST00000496050 RNF25Q96BH1 459 aaPredicted RBP12.67□□□□□ -0.38
SSR3-208ENST00000496050 VGFO15240 615 aaPredicted RBP12.62□□□□□ -0.39
SSR3-208ENST00000496050 DNAJC5Q9H3Z4 198 aa12.62□□□□□ -0.39
SSR3-208ENST00000496050 BCANQ96GW7 911 aa12.58□□□□□ -0.4
SSR3-208ENST00000496050 CHADLQ6NUI6 762 aa12.57□□□□□ -0.4
SSR3-208ENST00000496050 TSHZ2Q9NRE2 1034 aa12.57□□□□□ -0.4
SSR3-208ENST00000496050 KDM2AQ9Y2K7 1162 aa12.57□□□□□ -0.4
SSR3-208ENST00000496050 STK25O00506 426 aa12.56□□□□□ -0.4
SSR3-208ENST00000496050 PYGBP11216 843 aa12.56□□□□□ -0.4
SSR3-208ENST00000496050 SGIP1Q9BQI5 828 aa12.55□□□□□ -0.4
SSR3-208ENST00000496050 FARP1Q9Y4F1 1045 aaPredicted RBP12.55□□□□□ -0.4
SSR3-208ENST00000496050 TSPYL2Q9H2G4 693 aaPredicted RBP12.51□□□□□ -0.41
SSR3-208ENST00000496050 PRKAR2AP13861 404 aaKnown RBP12.49□□□□□ -0.41
SSR3-208ENST00000496050 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.47□□□□□ -0.41
SSR3-208ENST00000496050 NKX1-1Q15270 411 aaPredicted RBP12.47□□□□□ -0.41
SSR3-208ENST00000496050 ZFP91Q96JP5 570 aaPredicted RBP12.47□□□□□ -0.41
SSR3-208ENST00000496050 STK24Q9Y6E0 443 aa12.47□□□□□ -0.41
SSR3-208ENST00000496050 FXR2P51116 673 aaKnown RBP eCLIP12.46□□□□□ -0.41
SSR3-208ENST00000496050 GTPBP6O43824 516 aaPredicted RBP12.45□□□□□ -0.42
SSR3-208ENST00000496050 ZNF467Q7Z7K2 595 aaPredicted RBP12.45□□□□□ -0.42
SSR3-208ENST00000496050 BCL11BQ9C0K0 894 aaPredicted RBP12.45□□□□□ -0.42
SSR3-208ENST00000496050 RYDENQ9NUL5 291 aaKnown RBP12.45□□□□□ -0.42
SSR3-208ENST00000496050 PAK3O75914 559 aaPredicted RBP12.4□□□□□ -0.42
SSR3-208ENST00000496050 CHRDL2Q6WN34 429 aa12.38□□□□□ -0.43
SSR3-208ENST00000496050 CCDC61Q9Y6R9 512 aa12.36□□□□□ -0.43
SSR3-208ENST00000496050 PDAP1Q13442 181 aaKnown RBP12.35□□□□□ -0.43
SSR3-208ENST00000496050 PIP4P2Q8N4L2 257 aa12.32□□□□□ -0.44
SSR3-208ENST00000496050 ZNF579Q8NAF0 562 aaKnown RBP12.32□□□□□ -0.44
SSR3-208ENST00000496050 PCDHB8Q9UN66 801 aa12.32□□□□□ -0.44
SSR3-208ENST00000496050 PCDHB13Q9Y5F0 798 aa12.32□□□□□ -0.44
SSR3-208ENST00000496050 PSEN1P49768 467 aa12.28□□□□□ -0.44
SSR3-208ENST00000496050 NBR1Q14596 966 aa12.23□□□□□ -0.45
SSR3-208ENST00000496050 KIF12Q96FN5 646 aa12.23□□□□□ -0.45
SSR3-208ENST00000496050 MAP3K13O43283 966 aa12.22□□□□□ -0.45
SSR3-208ENST00000496050 IFNL1Q8IU54 200 aa12.21□□□□□ -0.45
SSR3-208ENST00000496050 ZRANB1Q9UGI0 708 aa12.19□□□□□ -0.46
SSR3-208ENST00000496050 PRKCSHP14314 528 aaPredicted RBP12.17□□□□□ -0.46
SSR3-208ENST00000496050 CD44P16070 742 aaKnown RBP12.16□□□□□ -0.46
SSR3-208ENST00000496050 SOX12O15370 315 aa12.14□□□□□ -0.47
SSR3-208ENST00000496050 TPRNQ4KMQ1 711 aa12.13□□□□□ -0.47
SSR3-208ENST00000496050 MFRPQ9BY79 579 aa12.13□□□□□ -0.47
SSR3-208ENST00000496050 WDR70Q9NW82 654 aa12.12□□□□□ -0.47
SSR3-208ENST00000496050 NLRP6P59044 892 aa12.11□□□□□ -0.47
SSR3-208ENST00000496050 CABP2Q9NPB3 220 aa12.11□□□□□ -0.47
SSR3-208ENST00000496050 EFCAB3Q8N7B9 438 aa12.1□□□□□ -0.47
SSR3-208ENST00000496050 PHF12Q96QT6 1004 aa12.07□□□□□ -0.48
SSR3-208ENST00000496050 P3H3Q8IVL6 736 aa12.05□□□□□ -0.48
SSR3-208ENST00000496050 GOLGA2Q08379 1002 aa12.03□□□□□ -0.48
SSR3-208ENST00000496050 CADPS2Q86UW7 1296 aa12.03□□□□□ -0.48
SSR3-208ENST00000496050 FBXO22Q8NEZ5 403 aa12.03□□□□□ -0.48
SSR3-208ENST00000496050 PHF8Q9UPP1 1060 aa12.02□□□□□ -0.49
SSR3-208ENST00000496050 C19orf67A6NJJ6 358 aa12.01□□□□□ -0.49
SSR3-208ENST00000496050 PPP1R37O75864 691 aa12□□□□□ -0.49
SSR3-208ENST00000496050 TMEM106CQ9BVX2 250 aa11.99□□□□□ -0.49
SSR3-208ENST00000496050 MKRN3Q13064 507 aaKnown RBP11.95□□□□□ -0.5
SSR3-208ENST00000496050 MS4A3Q96HJ5 214 aa11.95□□□□□ -0.5
SSR3-208ENST00000496050 TIE1P35590 1138 aa11.9□□□□□ -0.5
SSR3-208ENST00000496050 PDE4AP27815 886 aa11.89□□□□□ -0.51
SSR3-208ENST00000496050 KCNV2Q8TDN2 545 aa11.89□□□□□ -0.51
SSR3-208ENST00000496050 MS4A4AQ96JQ5 239 aa11.88□□□□□ -0.51
SSR3-208ENST00000496050 TRPC6Q9Y210 931 aa11.88□□□□□ -0.51
SSR3-208ENST00000496050 CLCN6P51797 869 aa11.87□□□□□ -0.51
SSR3-208ENST00000496050 E2F4Q16254 413 aa11.87□□□□□ -0.51
SSR3-208ENST00000496050 ARHGEF1Q92888 912 aaKnown RBP11.86□□□□□ -0.51
SSR3-208ENST00000496050 TTLL13PA6NNM8 815 aa11.84□□□□□ -0.51
SSR3-208ENST00000496050 HAX1O00165 279 aa11.84□□□□□ -0.51
SSR3-208ENST00000496050 LARP6Q9BRS8 491 aaKnown RBP11.83□□□□□ -0.52
SSR3-208ENST00000496050 TULP1O00294 542 aaPredicted RBP11.81□□□□□ -0.52
SSR3-208ENST00000496050 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.81□□□□□ -0.52
SSR3-208ENST00000496050 BMP2KQ9NSY1 1161 aaPredicted RBP11.8□□□□□ -0.52
SSR3-208ENST00000496050 NCKAP5LQ9HCH0 1330 aa11.79□□□□□ -0.52
SSR3-208ENST00000496050 GALR2O43603 387 aaPredicted RBP11.77□□□□□ -0.53
SSR3-208ENST00000496050 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.77□□□□□ -0.53
SSR3-208ENST00000496050 CRISPLD2Q9H0B8 497 aa11.77□□□□□ -0.53
SSR3-208ENST00000496050 TRIM35Q9UPQ4 493 aa11.77□□□□□ -0.53
SSR3-208ENST00000496050 MFSD10Q14728 455 aa11.76□□□□□ -0.53
SSR3-208ENST00000496050 ILDR1Q86SU0 546 aaPredicted RBP11.76□□□□□ -0.53
SSR3-208ENST00000496050 DDX27Q96GQ7 796 aaKnown RBP11.76□□□□□ -0.53
SSR3-208ENST00000496050 LMOD2Q6P5Q4 547 aa11.72□□□□□ -0.53
SSR3-208ENST00000496050 EVX2Q03828 476 aa11.7□□□□□ -0.54
SSR3-208ENST00000496050 SMYD5Q6GMV2 418 aa11.68□□□□□ -0.54
SSR3-208ENST00000496050 GPHNQ9NQX3 736 aaPredicted RBP11.68□□□□□ -0.54
SSR3-208ENST00000496050 ARIH1Q9Y4X5 557 aaPredicted RBP11.68□□□□□ -0.54
SSR3-208ENST00000496050 SEMA3EO15041 775 aa11.67□□□□□ -0.54
SSR3-208ENST00000496050 TESPA1A2RU30 521 aaPredicted RBP11.66□□□□□ -0.54
SSR3-208ENST00000496050 ATN1P54259 1190 aaPredicted RBP11.66□□□□□ -0.54
SSR3-208ENST00000496050 CAMK2BQ13554 666 aa11.66□□□□□ -0.54
SSR3-208ENST00000496050 DPY19L2Q6NUT2 758 aa11.66□□□□□ -0.54
SSR3-208ENST00000496050 IER5LQ5T953 404 aa11.65□□□□□ -0.54
SSR3-208ENST00000496050 OCEL1Q9H607 264 aa11.65□□□□□ -0.54
SSR3-208ENST00000496050 ATMINO43313 823 aaPredicted RBP11.64□□□□□ -0.55
SSR3-208ENST00000496050 PPP1R15BQ5SWA1 713 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms