RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 DDX10Q13206 875 aaKnown RBP17.47■□□□□ 0.39
COL6A3-212ENST00000491769 PPM1GO15355 546 aaPredicted RBP17.46■□□□□ 0.38
COL6A3-212ENST00000491769 CCDC136Q96JN2 1154 aa17.42■□□□□ 0.38
COL6A3-212ENST00000491769 TAOK2Q9UL54 1235 aa17.41■□□□□ 0.38
COL6A3-212ENST00000491769 MTUS2Q5JR59 1369 aa17.38■□□□□ 0.37
COL6A3-212ENST00000491769 NCBP3Q53F19 620 aaKnown RBP17.37■□□□□ 0.37
COL6A3-212ENST00000491769 SCRIBQ14160 1630 aa17.36■□□□□ 0.37
COL6A3-212ENST00000491769 MRS2Q9HD23 443 aa17.36■□□□□ 0.37
COL6A3-212ENST00000491769 TPRNQ4KMQ1 711 aa17.36■□□□□ 0.37
COL6A3-212ENST00000491769 RGL3Q3MIN7 710 aa17.36■□□□□ 0.37
COL6A3-212ENST00000491769 NCLP19338 710 aaKnown RBP17.35■□□□□ 0.37
COL6A3-212ENST00000491769 LAS1LQ9Y4W2 734 aaKnown RBP17.32■□□□□ 0.36
COL6A3-212ENST00000491769 ZRSR1Q15695 479 aaKnown RBP17.32■□□□□ 0.36
COL6A3-212ENST00000491769 RRP7BPQ9NSQ0 103 aa17.31■□□□□ 0.36
COL6A3-212ENST00000491769 PLEKHD1A6NEE1 506 aa17.31■□□□□ 0.36
COL6A3-212ENST00000491769 CFAP53Q96M91 514 aa17.3■□□□□ 0.36
COL6A3-212ENST00000491769 NBR1Q14596 966 aa17.3■□□□□ 0.36
COL6A3-212ENST00000491769 GOLGA2Q08379 1002 aa17.28■□□□□ 0.36
COL6A3-212ENST00000491769 POGKQ9P215 609 aa17.28■□□□□ 0.36
COL6A3-212ENST00000491769 HIRIP3Q9BW71 556 aaPredicted RBP17.26■□□□□ 0.35
COL6A3-212ENST00000491769 CLSTN1O94985 981 aa17.25■□□□□ 0.35
COL6A3-212ENST00000491769 MLECQ14165 292 aa17.24■□□□□ 0.35
COL6A3-212ENST00000491769 IRX6P78412 446 aaPredicted RBP17.24■□□□□ 0.35
COL6A3-212ENST00000491769 CASC1Q6TDU7 716 aa17.23■□□□□ 0.35
COL6A3-212ENST00000491769 SENP3-EIF4A1A0A087X0R7 540 aa17.21■□□□□ 0.35
COL6A3-212ENST00000491769 OS9Q13438 667 aaPredicted RBP17.21■□□□□ 0.35
COL6A3-212ENST00000491769 ISY1Q9ULR0 285 aaKnown RBP17.21■□□□□ 0.35
COL6A3-212ENST00000491769 NEUROD2Q15784 382 aa17.2■□□□□ 0.34
COL6A3-212ENST00000491769 ACIN1Q9UKV3 1341 aaKnown RBP17.2■□□□□ 0.34
COL6A3-212ENST00000491769 MAPK8IP3Q9UPT6 1336 aa17.19■□□□□ 0.34
COL6A3-212ENST00000491769 FTSJ3Q8IY81 847 aaKnown RBP17.19■□□□□ 0.34
COL6A3-212ENST00000491769 NAP1L2Q9ULW6 460 aaPredicted RBP17.18■□□□□ 0.34
COL6A3-212ENST00000491769 SOX12O15370 315 aa17.18■□□□□ 0.34
COL6A3-212ENST00000491769 KNSTRNQ9Y448 316 aa17.18■□□□□ 0.34
COL6A3-212ENST00000491769 EIF4G2P78344 907 aaKnown RBP eCLIP17.16■□□□□ 0.34
COL6A3-212ENST00000491769 TNNT2P45379 298 aaPredicted RBP17.16■□□□□ 0.34
COL6A3-212ENST00000491769 GOLGA6L22H0YM25 854 aa17.15■□□□□ 0.34
COL6A3-212ENST00000491769 FGD1P98174 961 aa17.15■□□□□ 0.34
COL6A3-212ENST00000491769 BECN1Q14457 450 aa17.15■□□□□ 0.34
COL6A3-212ENST00000491769 CDCA8Q53HL2 280 aa17.13■□□□□ 0.33
COL6A3-212ENST00000491769 ERCC6Q03468 1493 aa17.13■□□□□ 0.33
COL6A3-212ENST00000491769 GLIPR1L2Q4G1C9 344 aa17.12■□□□□ 0.33
COL6A3-212ENST00000491769 PTMAP06454 111 aaKnown RBP17.12■□□□□ 0.33
COL6A3-212ENST00000491769 NUDCQ9Y266 331 aa17.12■□□□□ 0.33
COL6A3-212ENST00000491769 CFDP1Q9UEE9 299 aaPredicted RBP17.11■□□□□ 0.33
COL6A3-212ENST00000491769 TRIM44Q96DX7 344 aaPredicted RBP17.1■□□□□ 0.33
COL6A3-212ENST00000491769 KCNJ4P48050 445 aa17.09■□□□□ 0.33
COL6A3-212ENST00000491769 U2SURPO15042 1029 aaKnown RBP17.08■□□□□ 0.33
COL6A3-212ENST00000491769 CCDC9Q9Y3X0 531 aaKnown RBP17.08■□□□□ 0.32
COL6A3-212ENST00000491769 CARD11Q9BXL7 1154 aa17.05■□□□□ 0.32
COL6A3-212ENST00000491769 PLCB2Q00722 1185 aa17.04■□□□□ 0.32
COL6A3-212ENST00000491769 RSF1Q96T23 1441 aaPredicted RBP17.04■□□□□ 0.32
COL6A3-212ENST00000491769 HDGFP51858 240 aaKnown RBP17.03■□□□□ 0.32
COL6A3-212ENST00000491769 ZNF330Q9Y3S2 320 aaPredicted RBP17.03■□□□□ 0.32
COL6A3-212ENST00000491769 FRAT1Q92837 279 aaPredicted RBP17.03■□□□□ 0.32
COL6A3-212ENST00000491769 DNTTIP2Q5QJE6 756 aaKnown RBP17.02■□□□□ 0.32
COL6A3-212ENST00000491769 DDRGK1Q96HY6 314 aa17.02■□□□□ 0.32
COL6A3-212ENST00000491769 TMX4Q9H1E5 349 aaPredicted RBP17.02■□□□□ 0.32
COL6A3-212ENST00000491769 CSB-PGBD3P0DP91 1061 aa17■□□□□ 0.31
COL6A3-212ENST00000491769 SAFB2Q14151 953 aaKnown RBP eCLIP17■□□□□ 0.31
COL6A3-212ENST00000491769 PAK3O75914 559 aaPredicted RBP16.99■□□□□ 0.31
COL6A3-212ENST00000491769 SRPK2P78362 688 aaKnown RBP16.98■□□□□ 0.31
COL6A3-212ENST00000491769 CC2D1BQ5T0F9 858 aaKnown RBP16.97■□□□□ 0.31
COL6A3-212ENST00000491769 GOLGA6L6A8MZA4 724 aa16.95■□□□□ 0.3
COL6A3-212ENST00000491769 ZCCHC6Q5VYS8 1495 aaKnown RBP16.94■□□□□ 0.3
COL6A3-212ENST00000491769 PNNQ9H307 717 aaKnown RBP16.94■□□□□ 0.3
COL6A3-212ENST00000491769 ANP32EQ9BTT0 268 aa16.93■□□□□ 0.3
COL6A3-212ENST00000491769 PRM3Q9NNZ6 103 aa16.93■□□□□ 0.3
COL6A3-212ENST00000491769 KANK1Q14678 1352 aa16.92■□□□□ 0.3
COL6A3-212ENST00000491769 CLIP1P30622 1438 aa16.92■□□□□ 0.3
COL6A3-212ENST00000491769 RTF1Q92541 710 aaKnown RBP16.92■□□□□ 0.3
COL6A3-212ENST00000491769 STK26Q9P289 416 aa16.91■□□□□ 0.3
COL6A3-212ENST00000491769 CHMP4BQ9H444 224 aaKnown RBP16.91■□□□□ 0.3
COL6A3-212ENST00000491769 G3V3G9 751 aa16.9■□□□□ 0.3
COL6A3-212ENST00000491769 DCAF8Q5TAQ9 597 aa16.9■□□□□ 0.3
COL6A3-212ENST00000491769 RGS3P49796 1198 aa16.9■□□□□ 0.3
COL6A3-212ENST00000491769 HSP90AB1P08238 724 aaKnown RBP16.89■□□□□ 0.29
COL6A3-212ENST00000491769 GGT6Q6P531 493 aa16.89■□□□□ 0.29
COL6A3-212ENST00000491769 GNL2Q13823 731 aaKnown RBP16.89■□□□□ 0.29
COL6A3-212ENST00000491769 GOLGA6L4A6NEF3 574 aa16.89■□□□□ 0.29
COL6A3-212ENST00000491769 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.86■□□□□ 0.29
COL6A3-212ENST00000491769 NRDCO43847 1150 aa16.83■□□□□ 0.29
COL6A3-212ENST00000491769 AMER1Q5JTC6 1135 aaPredicted RBP16.83■□□□□ 0.28
COL6A3-212ENST00000491769 MS4A1P11836 297 aa16.83■□□□□ 0.28
COL6A3-212ENST00000491769 APBB1O00213 710 aa16.81■□□□□ 0.28
COL6A3-212ENST00000491769 MORC1Q86VD1 984 aa16.81■□□□□ 0.28
COL6A3-212ENST00000491769 AEBP2Q6ZN18 517 aaPredicted RBP16.81■□□□□ 0.28
COL6A3-212ENST00000491769 MIER1Q8N108 512 aa16.81■□□□□ 0.28
COL6A3-212ENST00000491769 TMF1P82094 1093 aa16.8■□□□□ 0.28
COL6A3-212ENST00000491769 DCAF11Q8TEB1 546 aa16.8■□□□□ 0.28
COL6A3-212ENST00000491769 CHMP3Q9Y3E7 222 aa16.8■□□□□ 0.28
COL6A3-212ENST00000491769 MCCP23508 829 aa16.79■□□□□ 0.28
COL6A3-212ENST00000491769 EIF4G1Q04637 1599 aaKnown RBP16.79■□□□□ 0.28
COL6A3-212ENST00000491769 CCNB3Q8WWL7 1395 aa16.79■□□□□ 0.28
COL6A3-212ENST00000491769 HDGFL2Q7Z4V5 671 aaPredicted RBP16.78■□□□□ 0.28
COL6A3-212ENST00000491769 TAF7LQ5H9L4 462 aa16.77■□□□□ 0.28
COL6A3-212ENST00000491769 GORABQ5T7V8 394 aa16.76■□□□□ 0.27
COL6A3-212ENST00000491769 PDE4CQ08493 712 aa16.75■□□□□ 0.27
COL6A3-212ENST00000491769 DRC7Q8IY82 874 aa16.74■□□□□ 0.27
COL6A3-212ENST00000491769 MSH5O43196 834 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms