RNA–Protein interactions for RNA: ENST00000491258.1

PHC3-213, Transcript of polyhomeotic homolog 3, humanhuman

TSL 1 (best)

Gene PHC3, Length 719 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-213ENST00000491258 PLSCR2Q9NRY7 297 aa15.21■□□□□ 0.03
PHC3-213ENST00000491258 MS4A3Q96HJ5 214 aa15.15■□□□□ 0.02
PHC3-213ENST00000491258 PELP1Q8IZL8 1130 aaKnown RBP15.14■□□□□ 0.01
PHC3-213ENST00000491258 CCDC61Q9Y6R9 512 aa15.12■□□□□ 0.01
PHC3-213ENST00000491258 RASEFQ8IZ41 740 aa15.1■□□□□ 0.01
PHC3-213ENST00000491258 ASTLQ6HA08 431 aaPredicted RBP15.06■□□□□ 0
PHC3-213ENST00000491258 ZBTB47Q9UFB7 747 aaPredicted RBP15.06■□□□□ 0
PHC3-213ENST00000491258 KIF12Q96FN5 646 aa15.03■□□□□ -0
PHC3-213ENST00000491258 POTEMA6NI47 508 aa15.01□□□□□ -0.01
PHC3-213ENST00000491258 METRNQ9UJH8 293 aa15.01□□□□□ -0.01
PHC3-213ENST00000491258 ATMINO43313 823 aaPredicted RBP15□□□□□ -0.01
PHC3-213ENST00000491258 MAP3K13O43283 966 aa14.97□□□□□ -0.01
PHC3-213ENST00000491258 FBXO3Q9UK99 471 aa14.97□□□□□ -0.01
PHC3-213ENST00000491258 POTEJP0CG39 1038 aa14.96□□□□□ -0.01
PHC3-213ENST00000491258 POTEGQ6S5H5 508 aa14.96□□□□□ -0.01
PHC3-213ENST00000491258 SLC39A7Q92504 469 aa14.96□□□□□ -0.01
PHC3-213ENST00000491258 C7P10643 843 aa14.95□□□□□ -0.02
PHC3-213ENST00000491258 NUBP1P53384 320 aa14.95□□□□□ -0.02
PHC3-213ENST00000491258 TRPC6Q9Y210 931 aa14.9□□□□□ -0.02
PHC3-213ENST00000491258 ATN1P54259 1190 aaPredicted RBP14.89□□□□□ -0.03
PHC3-213ENST00000491258 FAM212AQ96EL1 285 aa14.89□□□□□ -0.03
PHC3-213ENST00000491258 BMP2KQ9NSY1 1161 aaPredicted RBP14.87□□□□□ -0.03
PHC3-213ENST00000491258 PCDHB13Q9Y5F0 798 aa14.85□□□□□ -0.03
PHC3-213ENST00000491258 MAMSTRQ6ZN01 415 aa14.84□□□□□ -0.03
PHC3-213ENST00000491258 TIE1P35590 1138 aa14.82□□□□□ -0.04
PHC3-213ENST00000491258 LCE2DQ5TA82 110 aaPredicted RBP14.81□□□□□ -0.04
PHC3-213ENST00000491258 PCDH10Q9P2E7 1040 aa14.81□□□□□ -0.04
PHC3-213ENST00000491258 VASPP50552 380 aaPredicted RBP14.8□□□□□ -0.04
PHC3-213ENST00000491258 DCAF8Q5TAQ9 597 aa14.79□□□□□ -0.04
PHC3-213ENST00000491258 SGIP1Q9BQI5 828 aa14.79□□□□□ -0.04
PHC3-213ENST00000491258 KLHL34Q8N239 644 aa14.78□□□□□ -0.04
PHC3-213ENST00000491258 POTEFA5A3E0 1075 aa14.75□□□□□ -0.05
PHC3-213ENST00000491258 TTLL13PA6NNM8 815 aa14.75□□□□□ -0.05
PHC3-213ENST00000491258 IFNL1Q8IU54 200 aa14.74□□□□□ -0.05
PHC3-213ENST00000491258 SCUBE2Q9NQ36 999 aa14.73□□□□□ -0.05
PHC3-213ENST00000491258 PYGBP11216 843 aa14.7□□□□□ -0.06
PHC3-213ENST00000491258 TRIM35Q9UPQ4 493 aa14.67□□□□□ -0.06
PHC3-213ENST00000491258 SEC24BO95487 1268 aa14.65□□□□□ -0.06
PHC3-213ENST00000491258 TMEM106CQ9BVX2 250 aa14.65□□□□□ -0.06
PHC3-213ENST00000491258 FAM163AQ96GL9 167 aaPredicted RBP14.63□□□□□ -0.07
PHC3-213ENST00000491258 COLQQ9Y215 455 aaPredicted RBP14.61□□□□□ -0.07
PHC3-213ENST00000491258 GSE1Q14687 1217 aa14.6□□□□□ -0.07
PHC3-213ENST00000491258 IER5LQ5T953 404 aa14.58□□□□□ -0.08
PHC3-213ENST00000491258 PCDHB8Q9UN66 801 aa14.58□□□□□ -0.08
PHC3-213ENST00000491258 IFNLR1Q8IU57 520 aaPredicted RBP14.52□□□□□ -0.09
PHC3-213ENST00000491258 SPOCK2Q92563 424 aa14.5□□□□□ -0.09
PHC3-213ENST00000491258 PLCG2P16885 1265 aa14.48□□□□□ -0.09
PHC3-213ENST00000491258 ZNF467Q7Z7K2 595 aaPredicted RBP14.47□□□□□ -0.09
PHC3-213ENST00000491258 CIZ1Q9ULV3 898 aaPredicted RBP14.45□□□□□ -0.1
PHC3-213ENST00000491258 CHRM1P11229 460 aaPredicted RBP14.43□□□□□ -0.1
PHC3-213ENST00000491258 IRX5P78411 483 aaPredicted RBP14.42□□□□□ -0.1
PHC3-213ENST00000491258 CDAN1Q8IWY9 1227 aa14.37□□□□□ -0.11
PHC3-213ENST00000491258 OCEL1Q9H607 264 aa14.37□□□□□ -0.11
PHC3-213ENST00000491258 GOLGA2Q08379 1002 aa14.36□□□□□ -0.11
PHC3-213ENST00000491258 PSEN1P49768 467 aa14.35□□□□□ -0.11
PHC3-213ENST00000491258 SLAIN1Q8ND83 568 aa14.32□□□□□ -0.12
PHC3-213ENST00000491258 ST18O60284 1047 aa14.31□□□□□ -0.12
PHC3-213ENST00000491258 MKRN3Q13064 507 aaKnown RBP14.31□□□□□ -0.12
PHC3-213ENST00000491258 PDAP1Q13442 181 aaKnown RBP14.29□□□□□ -0.12
PHC3-213ENST00000491258 PDCD7Q8N8D1 485 aaKnown RBP14.22□□□□□ -0.13
PHC3-213ENST00000491258 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.22□□□□□ -0.133e-7■■□□□ 11.7
PHC3-213ENST00000491258 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.21□□□□□ -0.13
PHC3-213ENST00000491258 CABP2Q9NPB3 220 aa14.2□□□□□ -0.14
PHC3-213ENST00000491258 TRIM41Q8WV44 630 aa14.19□□□□□ -0.14
PHC3-213ENST00000491258 L3MBTL3Q96JM7 780 aaPredicted RBP14.15□□□□□ -0.14
PHC3-213ENST00000491258 TMEM121BQ9BXQ6 578 aaPredicted RBP14.15□□□□□ -0.14
PHC3-213ENST00000491258 C3orf67Q6ZVT6 689 aa14.14□□□□□ -0.15
PHC3-213ENST00000491258 DPY19L2Q6NUT2 758 aa14.08□□□□□ -0.16
PHC3-213ENST00000491258 SNPHO15079 494 aa14.06□□□□□ -0.16
PHC3-213ENST00000491258 MMRN1Q13201 1228 aa14.06□□□□□ -0.16
PHC3-213ENST00000491258 ILDR1Q86SU0 546 aaPredicted RBP14.06□□□□□ -0.16
PHC3-213ENST00000491258 SPNS2Q8IVW8 549 aa14.06□□□□□ -0.16
PHC3-213ENST00000491258 G3V3G9 751 aa14.04□□□□□ -0.16
PHC3-213ENST00000491258 RIOK3O14730 519 aaKnown RBP14.02□□□□□ -0.17
PHC3-213ENST00000491258 EFCAB3Q8N7B9 438 aa14.02□□□□□ -0.17
PHC3-213ENST00000491258 MARVELD3Q96A59 401 aa14□□□□□ -0.17
PHC3-213ENST00000491258 RNF25Q96BH1 459 aaPredicted RBP14□□□□□ -0.17
PHC3-213ENST00000491258 BOLA1Q9Y3E2 137 aa13.99□□□□□ -0.17
PHC3-213ENST00000491258 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.96□□□□□ -0.17
PHC3-213ENST00000491258 VGFO15240 615 aaPredicted RBP13.96□□□□□ -0.17
PHC3-213ENST00000491258 ZFP91Q96JP5 570 aaPredicted RBP13.96□□□□□ -0.17
PHC3-213ENST00000491258 SOX12O15370 315 aa13.86□□□□□ -0.19
PHC3-213ENST00000491258 EMP3P54852 163 aa13.86□□□□□ -0.19
PHC3-213ENST00000491258 PHF8Q9UPP1 1060 aa13.84□□□□□ -0.19
PHC3-213ENST00000491258 POTEB3A0JP26 581 aa13.83□□□□□ -0.2
PHC3-213ENST00000491258 ECM2O94769 699 aaPredicted RBP13.83□□□□□ -0.2
PHC3-213ENST00000491258 POTEBQ6S5H4 581 aa13.83□□□□□ -0.2
PHC3-213ENST00000491258 KRTAP3-3Q9BYR6 98 aa13.83□□□□□ -0.2
PHC3-213ENST00000491258 KRTAP3-2Q9BYR7 98 aa13.83□□□□□ -0.2
PHC3-213ENST00000491258 TAOK2Q9UL54 1235 aa13.83□□□□□ -0.2
PHC3-213ENST00000491258 BCL11BQ9C0K0 894 aaPredicted RBP13.81□□□□□ -0.2
PHC3-213ENST00000491258 MICALL2Q8IY33 904 aa13.8□□□□□ -0.2
PHC3-213ENST00000491258 MS4A4AQ96JQ5 239 aa13.8□□□□□ -0.2
PHC3-213ENST00000491258 HS3ST6Q96QI5 342 aa13.8□□□□□ -0.2
PHC3-213ENST00000491258 STK24Q9Y6E0 443 aa13.79□□□□□ -0.2
PHC3-213ENST00000491258 HOXB3P14651 431 aaPredicted RBP13.75□□□□□ -0.21
PHC3-213ENST00000491258 FAM205CA6NFA0 338 aa13.74□□□□□ -0.21
PHC3-213ENST00000491258 STK25O00506 426 aa13.74□□□□□ -0.21
PHC3-213ENST00000491258 ZNF710Q8N1W2 664 aa13.74□□□□□ -0.21
PHC3-213ENST00000491258 NLRP6P59044 892 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms