RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 TSPYL2Q9H2G4 693 aaPredicted RBP12.89□□□□□ -0.35
HMGB1P38-201ENST00000490557 PYGBP11216 843 aa12.78□□□□□ -0.36
HMGB1P38-201ENST00000490557 CD44P16070 742 aaKnown RBP12.78□□□□□ -0.36
HMGB1P38-201ENST00000490557 RGL2O15211 777 aa12.77□□□□□ -0.37
HMGB1P38-201ENST00000490557 ZRANB1Q9UGI0 708 aa12.74□□□□□ -0.37
HMGB1P38-201ENST00000490557 CHRM1P11229 460 aaPredicted RBP12.73□□□□□ -0.37
HMGB1P38-201ENST00000490557 TAOK2Q9UL54 1235 aa12.72□□□□□ -0.37
HMGB1P38-201ENST00000490557 CCDC61Q9Y6R9 512 aa12.7□□□□□ -0.38
HMGB1P38-201ENST00000490557 HAX1O00165 279 aa12.69□□□□□ -0.38
HMGB1P38-201ENST00000490557 RIOK3O14730 519 aaKnown RBP12.69□□□□□ -0.38
HMGB1P38-201ENST00000490557 C19orf67A6NJJ6 358 aa12.67□□□□□ -0.38
HMGB1P38-201ENST00000490557 ZNF467Q7Z7K2 595 aaPredicted RBP12.64□□□□□ -0.39
HMGB1P38-201ENST00000490557 RNF25Q96BH1 459 aaPredicted RBP12.64□□□□□ -0.39
HMGB1P38-201ENST00000490557 VGFO15240 615 aaPredicted RBP12.61□□□□□ -0.39
HMGB1P38-201ENST00000490557 CHGAP10645 457 aaKnown RBP12.61□□□□□ -0.39
HMGB1P38-201ENST00000490557 POTEHQ6S545 545 aa12.61□□□□□ -0.39
HMGB1P38-201ENST00000490557 PCDHB13Q9Y5F0 798 aa12.61□□□□□ -0.39
HMGB1P38-201ENST00000490557 PHF12Q96QT6 1004 aa12.6□□□□□ -0.39
HMGB1P38-201ENST00000490557 ZNF579Q8NAF0 562 aaKnown RBP12.58□□□□□ -0.4
HMGB1P38-201ENST00000490557 KIF12Q96FN5 646 aa12.58□□□□□ -0.4
HMGB1P38-201ENST00000490557 MAP3K13O43283 966 aa12.57□□□□□ -0.4
HMGB1P38-201ENST00000490557 SGIP1Q9BQI5 828 aa12.57□□□□□ -0.4
HMGB1P38-201ENST00000490557 PCDHB8Q9UN66 801 aa12.56□□□□□ -0.4
HMGB1P38-201ENST00000490557 STK25O00506 426 aa12.54□□□□□ -0.4
HMGB1P38-201ENST00000490557 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.54□□□□□ -0.4
HMGB1P38-201ENST00000490557 PDAP1Q13442 181 aaKnown RBP12.52□□□□□ -0.41
HMGB1P38-201ENST00000490557 IFNL1Q8IU54 200 aa12.52□□□□□ -0.41
HMGB1P38-201ENST00000490557 HS6ST3Q8IZP7 471 aa12.52□□□□□ -0.41
HMGB1P38-201ENST00000490557 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.51□□□□□ -0.41
HMGB1P38-201ENST00000490557 BBXQ8WY36 941 aaPredicted RBP12.51□□□□□ -0.41
HMGB1P38-201ENST00000490557 ZFP91Q96JP5 570 aaPredicted RBP12.51□□□□□ -0.41
HMGB1P38-201ENST00000490557 STK24Q9Y6E0 443 aa12.49□□□□□ -0.41
HMGB1P38-201ENST00000490557 PSEN1P49768 467 aa12.48□□□□□ -0.41
HMGB1P38-201ENST00000490557 BCL11BQ9C0K0 894 aaPredicted RBP12.48□□□□□ -0.41
HMGB1P38-201ENST00000490557 CLCN6P51797 869 aa12.45□□□□□ -0.42
HMGB1P38-201ENST00000490557 EVX2Q03828 476 aa12.45□□□□□ -0.42
HMGB1P38-201ENST00000490557 MS4A3Q96HJ5 214 aa12.44□□□□□ -0.42
HMGB1P38-201ENST00000490557 PLCB2Q00722 1185 aa12.39□□□□□ -0.43
HMGB1P38-201ENST00000490557 PAXIP1Q6ZW49 1069 aaPredicted RBP12.38□□□□□ -0.43
HMGB1P38-201ENST00000490557 CFAP44Q96MT7 982 aa12.38□□□□□ -0.43
HMGB1P38-201ENST00000490557 GOLGA2Q08379 1002 aa12.37□□□□□ -0.43
HMGB1P38-201ENST00000490557 SLC24A1O60721 1099 aa12.36□□□□□ -0.43
HMGB1P38-201ENST00000490557 SPRYD3Q8NCJ5 442 aa12.36□□□□□ -0.43
HMGB1P38-201ENST00000490557 TMEM106CQ9BVX2 250 aa12.36□□□□□ -0.43
HMGB1P38-201ENST00000490557 GALR2O43603 387 aaPredicted RBP12.35□□□□□ -0.43
HMGB1P38-201ENST00000490557 DNAJC5Q9H3Z4 198 aa12.34□□□□□ -0.43
HMGB1P38-201ENST00000490557 CABP2Q9NPB3 220 aa12.33□□□□□ -0.44
HMGB1P38-201ENST00000490557 TIE1P35590 1138 aa12.31□□□□□ -0.44
HMGB1P38-201ENST00000490557 RYDENQ9NUL5 291 aaKnown RBP12.31□□□□□ -0.44
HMGB1P38-201ENST00000490557 TRPC6Q9Y210 931 aa12.31□□□□□ -0.44
HMGB1P38-201ENST00000490557 GABBR2O75899 941 aa12.29□□□□□ -0.44
HMGB1P38-201ENST00000490557 HAP1P54257 671 aaPredicted RBP12.29□□□□□ -0.44
HMGB1P38-201ENST00000490557 NKX1-1Q15270 411 aaPredicted RBP12.28□□□□□ -0.44
HMGB1P38-201ENST00000490557 MKRN3Q13064 507 aaKnown RBP12.26□□□□□ -0.45
HMGB1P38-201ENST00000490557 BMP2KQ9NSY1 1161 aaPredicted RBP12.26□□□□□ -0.45
HMGB1P38-201ENST00000490557 TTLL13PA6NNM8 815 aa12.25□□□□□ -0.45
HMGB1P38-201ENST00000490557 EFCAB3Q8N7B9 438 aa12.25□□□□□ -0.45
HMGB1P38-201ENST00000490557 DCBLD2Q96PD2 775 aa12.24□□□□□ -0.45
HMGB1P38-201ENST00000490557 SP7Q8TDD2 431 aaPredicted RBP12.23□□□□□ -0.45
HMGB1P38-201ENST00000490557 SOX12O15370 315 aa12.22□□□□□ -0.45
HMGB1P38-201ENST00000490557 NLRP6P59044 892 aa12.2□□□□□ -0.46
HMGB1P38-201ENST00000490557 TRIM35Q9UPQ4 493 aa12.2□□□□□ -0.46
HMGB1P38-201ENST00000490557 GTPBP6O43824 516 aaPredicted RBP12.19□□□□□ -0.46
HMGB1P38-201ENST00000490557 MFRPQ9BY79 579 aa12.17□□□□□ -0.46
HMGB1P38-201ENST00000490557 ATMINO43313 823 aaPredicted RBP12.16□□□□□ -0.46
HMGB1P38-201ENST00000490557 ATN1P54259 1190 aaPredicted RBP12.16□□□□□ -0.46
HMGB1P38-201ENST00000490557 ASTLQ6HA08 431 aaPredicted RBP12.16□□□□□ -0.46
HMGB1P38-201ENST00000490557 PHF8Q9UPP1 1060 aa12.15□□□□□ -0.46
HMGB1P38-201ENST00000490557 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.12□□□□□ -0.47
HMGB1P38-201ENST00000490557 FBXO22Q8NEZ5 403 aa12.09□□□□□ -0.47
HMGB1P38-201ENST00000490557 TSHZ2Q9NRE2 1034 aa12.08□□□□□ -0.48
HMGB1P38-201ENST00000490557 IER5LQ5T953 404 aa12.07□□□□□ -0.48
HMGB1P38-201ENST00000490557 SEC24BO95487 1268 aa12.05□□□□□ -0.48
HMGB1P38-201ENST00000490557 PLCG2P16885 1265 aa12.04□□□□□ -0.48
HMGB1P38-201ENST00000490557 VSIG10Q8N0Z9 540 aa12.04□□□□□ -0.48
HMGB1P38-201ENST00000490557 SLC39A7Q92504 469 aa12.03□□□□□ -0.48
HMGB1P38-201ENST00000490557 OCEL1Q9H607 264 aa12.02□□□□□ -0.49
HMGB1P38-201ENST00000490557 MS4A4AQ96JQ5 239 aa12.01□□□□□ -0.49
HMGB1P38-201ENST00000490557 G3V3G9 751 aa12□□□□□ -0.49
HMGB1P38-201ENST00000490557 PPP1R37O75864 691 aa12□□□□□ -0.49
HMGB1P38-201ENST00000490557 PELP1Q8IZL8 1130 aaKnown RBP12□□□□□ -0.49
HMGB1P38-201ENST00000490557 C7P10643 843 aa11.99□□□□□ -0.49
HMGB1P38-201ENST00000490557 IRX5P78411 483 aaPredicted RBP11.98□□□□□ -0.49
HMGB1P38-201ENST00000490557 ILDR1Q86SU0 546 aaPredicted RBP11.97□□□□□ -0.49
HMGB1P38-201ENST00000490557 METRNQ9UJH8 293 aa11.97□□□□□ -0.49
HMGB1P38-201ENST00000490557 POTEIP0CG38 1075 aa11.96□□□□□ -0.49
HMGB1P38-201ENST00000490557 PDCD7Q8N8D1 485 aaKnown RBP11.95□□□□□ -0.5
HMGB1P38-201ENST00000490557 DPY19L2Q6NUT2 758 aa11.93□□□□□ -0.5
HMGB1P38-201ENST00000490557 L3MBTL3Q96JM7 780 aaPredicted RBP11.91□□□□□ -0.5
HMGB1P38-201ENST00000490557 COLQQ9Y215 455 aaPredicted RBP11.9□□□□□ -0.5
HMGB1P38-201ENST00000490557 KDM2AQ9Y2K7 1162 aa11.9□□□□□ -0.5
HMGB1P38-201ENST00000490557 BOLA1Q9Y3E2 137 aa11.9□□□□□ -0.5
HMGB1P38-201ENST00000490557 WDR70Q9NW82 654 aa11.89□□□□□ -0.51
HMGB1P38-201ENST00000490557 CADPS2Q86UW7 1296 aa11.87□□□□□ -0.51
HMGB1P38-201ENST00000490557 MICALL2Q8IY33 904 aa11.86□□□□□ -0.51
HMGB1P38-201ENST00000490557 PDE4AP27815 886 aa11.83□□□□□ -0.52
HMGB1P38-201ENST00000490557 POTEFA5A3E0 1075 aa11.81□□□□□ -0.52
HMGB1P38-201ENST00000490557 C3orf67Q6ZVT6 689 aa11.8□□□□□ -0.52
HMGB1P38-201ENST00000490557 TMC2Q8TDI7 906 aa11.79□□□□□ -0.52
HMGB1P38-201ENST00000490557 LARP6Q9BRS8 491 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms