RNA–Protein interactions for RNA: ENST00000488427.1

ITGB1-214, Transcript of integrin subunit beta 1, humanhuman

TSL 1 (best)

Gene ITGB1, Length 861 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-214ENST00000488427 PLCD3Q8N3E9 789 aa12.32□□□□□ -0.44
ITGB1-214ENST00000488427 ZBTB47Q9UFB7 747 aaPredicted RBP12.32□□□□□ -0.44
ITGB1-214ENST00000488427 CCDC61Q9Y6R9 512 aa12.29□□□□□ -0.44
ITGB1-214ENST00000488427 ASTLQ6HA08 431 aaPredicted RBP12.28□□□□□ -0.44
ITGB1-214ENST00000488427 PELP1Q8IZL8 1130 aaKnown RBP12.28□□□□□ -0.44
ITGB1-214ENST00000488427 POTEB2H3BUK9 544 aa12.25□□□□□ -0.45
ITGB1-214ENST00000488427 ATMINO43313 823 aaPredicted RBP12.25□□□□□ -0.45
ITGB1-214ENST00000488427 OTUD5Q96G74 571 aa12.24□□□□□ -0.45
ITGB1-214ENST00000488427 SLC39A7Q92504 469 aa12.23□□□□□ -0.45
ITGB1-214ENST00000488427 METRNQ9UJH8 293 aa12.23□□□□□ -0.45
ITGB1-214ENST00000488427 KIF12Q96FN5 646 aa12.22□□□□□ -0.45
ITGB1-214ENST00000488427 C7P10643 843 aa12.21□□□□□ -0.45
ITGB1-214ENST00000488427 KLHL34Q8N239 644 aa12.2□□□□□ -0.46
ITGB1-214ENST00000488427 RASEFQ8IZ41 740 aa12.19□□□□□ -0.46
ITGB1-214ENST00000488427 ATN1P54259 1190 aaPredicted RBP12.15□□□□□ -0.46
ITGB1-214ENST00000488427 MAP3K13O43283 966 aa12.14□□□□□ -0.47
ITGB1-214ENST00000488427 BMP2KQ9NSY1 1161 aaPredicted RBP12.11□□□□□ -0.47
ITGB1-214ENST00000488427 TIE1P35590 1138 aa12.1□□□□□ -0.47
ITGB1-214ENST00000488427 MAMSTRQ6ZN01 415 aa12.1□□□□□ -0.47
ITGB1-214ENST00000488427 IFNLR1Q8IU57 520 aaPredicted RBP12.09□□□□□ -0.47
ITGB1-214ENST00000488427 TRPC6Q9Y210 931 aa12.09□□□□□ -0.47
ITGB1-214ENST00000488427 SPOCK2Q92563 424 aa12.08□□□□□ -0.48
ITGB1-214ENST00000488427 NUBP1P53384 320 aa12.05□□□□□ -0.48
ITGB1-214ENST00000488427 AMER1Q5JTC6 1135 aaPredicted RBP12.05□□□□□ -0.48
ITGB1-214ENST00000488427 POTEJP0CG39 1038 aa12.04□□□□□ -0.48
ITGB1-214ENST00000488427 SGIP1Q9BQI5 828 aa12.04□□□□□ -0.48
ITGB1-214ENST00000488427 PCDHB13Q9Y5F0 798 aa12.04□□□□□ -0.48
ITGB1-214ENST00000488427 FAM212AQ96EL1 285 aa12.03□□□□□ -0.48
ITGB1-214ENST00000488427 SCUBE2Q9NQ36 999 aa12.03□□□□□ -0.48
ITGB1-214ENST00000488427 TTLL13PA6NNM8 815 aa12.01□□□□□ -0.49
ITGB1-214ENST00000488427 PLSCR2Q9NRY7 297 aa12.01□□□□□ -0.49
ITGB1-214ENST00000488427 POTEMA6NI47 508 aa11.99□□□□□ -0.49
ITGB1-214ENST00000488427 SEC24BO95487 1268 aa11.98□□□□□ -0.49
ITGB1-214ENST00000488427 POTEFA5A3E0 1075 aa11.97□□□□□ -0.49
ITGB1-214ENST00000488427 POTEGQ6S5H5 508 aa11.95□□□□□ -0.5
ITGB1-214ENST00000488427 TRIM35Q9UPQ4 493 aa11.95□□□□□ -0.5
ITGB1-214ENST00000488427 GSE1Q14687 1217 aa11.94□□□□□ -0.5
ITGB1-214ENST00000488427 IER5LQ5T953 404 aa11.93□□□□□ -0.5
ITGB1-214ENST00000488427 IFNL1Q8IU54 200 aa11.93□□□□□ -0.5
ITGB1-214ENST00000488427 COLQQ9Y215 455 aaPredicted RBP11.91□□□□□ -0.5
ITGB1-214ENST00000488427 TRIM41Q8WV44 630 aa11.9□□□□□ -0.5
ITGB1-214ENST00000488427 DCAF8Q5TAQ9 597 aa11.89□□□□□ -0.51
ITGB1-214ENST00000488427 TMEM106CQ9BVX2 250 aa11.89□□□□□ -0.51
ITGB1-214ENST00000488427 FAM163AQ96GL9 167 aaPredicted RBP11.86□□□□□ -0.51
ITGB1-214ENST00000488427 CIZ1Q9ULV3 898 aaPredicted RBP11.86□□□□□ -0.51
ITGB1-214ENST00000488427 PYGBP11216 843 aa11.84□□□□□ -0.51
ITGB1-214ENST00000488427 PCDH10Q9P2E7 1040 aa11.83□□□□□ -0.52
ITGB1-214ENST00000488427 PLCG2P16885 1265 aa11.81□□□□□ -0.52
ITGB1-214ENST00000488427 LCE2DQ5TA82 110 aaPredicted RBP11.79□□□□□ -0.52
ITGB1-214ENST00000488427 RTN4Q9NQC3 1192 aaKnown RBP11.79□□□□□ -0.52
ITGB1-214ENST00000488427 PCDHB8Q9UN66 801 aa11.75□□□□□ -0.53
ITGB1-214ENST00000488427 ECM2O94769 699 aaPredicted RBP11.74□□□□□ -0.53
ITGB1-214ENST00000488427 IRX5P78411 483 aaPredicted RBP11.74□□□□□ -0.53
ITGB1-214ENST00000488427 SLAIN1Q8ND83 568 aa11.73□□□□□ -0.53
ITGB1-214ENST00000488427 TAOK2Q9UL54 1235 aa11.72□□□□□ -0.53
ITGB1-214ENST00000488427 OCEL1Q9H607 264 aa11.71□□□□□ -0.53
ITGB1-214ENST00000488427 CHRM1P11229 460 aaPredicted RBP11.69□□□□□ -0.54
ITGB1-214ENST00000488427 PKD2Q13563 968 aa11.69□□□□□ -0.54
ITGB1-214ENST00000488427 ZNF467Q7Z7K2 595 aaPredicted RBP11.69□□□□□ -0.54
ITGB1-214ENST00000488427 GOLGA2Q08379 1002 aa11.64□□□□□ -0.55
ITGB1-214ENST00000488427 MKRN3Q13064 507 aaKnown RBP11.61□□□□□ -0.55
ITGB1-214ENST00000488427 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.61□□□□□ -0.55
ITGB1-214ENST00000488427 ST18O60284 1047 aa11.6□□□□□ -0.55
ITGB1-214ENST00000488427 DCAF8L2P0C7V8 631 aa11.59□□□□□ -0.55
ITGB1-214ENST00000488427 RIOK3O14730 519 aaKnown RBP11.57□□□□□ -0.56
ITGB1-214ENST00000488427 PSEN1P49768 467 aa11.57□□□□□ -0.56
ITGB1-214ENST00000488427 CDAN1Q8IWY9 1227 aa11.57□□□□□ -0.56
ITGB1-214ENST00000488427 SNPHO15079 494 aa11.55□□□□□ -0.56
ITGB1-214ENST00000488427 PDCD7Q8N8D1 485 aaKnown RBP11.54□□□□□ -0.56
ITGB1-214ENST00000488427 VGFO15240 615 aaPredicted RBP11.53□□□□□ -0.56
ITGB1-214ENST00000488427 C3orf67Q6ZVT6 689 aa11.53□□□□□ -0.56
ITGB1-214ENST00000488427 L3MBTL3Q96JM7 780 aaPredicted RBP11.53□□□□□ -0.56
ITGB1-214ENST00000488427 PDAP1Q13442 181 aaKnown RBP11.52□□□□□ -0.57
ITGB1-214ENST00000488427 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.52□□□□□ -0.57
ITGB1-214ENST00000488427 TMEM121BQ9BXQ6 578 aaPredicted RBP11.51□□□□□ -0.57
ITGB1-214ENST00000488427 RGL2O15211 777 aa11.5□□□□□ -0.57
ITGB1-214ENST00000488427 RNF25Q96BH1 459 aaPredicted RBP11.43□□□□□ -0.58
ITGB1-214ENST00000488427 CABP2Q9NPB3 220 aa11.43□□□□□ -0.58
ITGB1-214ENST00000488427 G3V3G9 751 aa11.41□□□□□ -0.58
ITGB1-214ENST00000488427 ILDR1Q86SU0 546 aaPredicted RBP11.41□□□□□ -0.58
ITGB1-214ENST00000488427 MARVELD3Q96A59 401 aa11.4□□□□□ -0.58
ITGB1-214ENST00000488427 STK25O00506 426 aa11.39□□□□□ -0.59
ITGB1-214ENST00000488427 CHGAP10645 457 aaKnown RBP11.38□□□□□ -0.59
ITGB1-214ENST00000488427 HS6ST3Q8IZP7 471 aa11.38□□□□□ -0.59
ITGB1-214ENST00000488427 DPY19L2Q6NUT2 758 aa11.37□□□□□ -0.59
ITGB1-214ENST00000488427 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.36□□□□□ -0.59
ITGB1-214ENST00000488427 ZFP91Q96JP5 570 aaPredicted RBP11.36□□□□□ -0.59
ITGB1-214ENST00000488427 BOLA1Q9Y3E2 137 aa11.35□□□□□ -0.59
ITGB1-214ENST00000488427 EMP3P54852 163 aa11.34□□□□□ -0.59
ITGB1-214ENST00000488427 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.34□□□□□ -0.59
ITGB1-214ENST00000488427 BCL11BQ9C0K0 894 aaPredicted RBP11.33□□□□□ -0.6
ITGB1-214ENST00000488427 RYDENQ9NUL5 291 aaKnown RBP11.33□□□□□ -0.6
ITGB1-214ENST00000488427 STK24Q9Y6E0 443 aa11.33□□□□□ -0.6
ITGB1-214ENST00000488427 BBXQ8WY36 941 aaPredicted RBP11.3□□□□□ -0.6
ITGB1-214ENST00000488427 SPNS2Q8IVW8 549 aa11.27□□□□□ -0.61
ITGB1-214ENST00000488427 EFCAB3Q8N7B9 438 aa11.27□□□□□ -0.61
ITGB1-214ENST00000488427 DNAJC5Q9H3Z4 198 aa11.27□□□□□ -0.61
ITGB1-214ENST00000488427 MMRN1Q13201 1228 aa11.26□□□□□ -0.61
ITGB1-214ENST00000488427 FAM205CA6NFA0 338 aa11.25□□□□□ -0.61
ITGB1-214ENST00000488427 HS3ST6Q96QI5 342 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms