RNA–Protein interactions for RNA: ENST00000481242.5

GARNL3-216, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 2

Gene GARNL3, Length 4,816 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-216ENST00000481242 FHAD1B1AJZ9 1412 aa12.72□□□□□ -0.37
GARNL3-216ENST00000481242 CEP162Q5TB80 1403 aa12.71□□□□□ -0.37
GARNL3-216ENST00000481242 EIF4G2P78344 907 aaKnown RBP eCLIP12.71□□□□□ -0.38
GARNL3-216ENST00000481242 KDM2AQ9Y2K7 1162 aa12.71□□□□□ -0.38
GARNL3-216ENST00000481242 ARID4BQ4LE39 1312 aaPredicted RBP12.7□□□□□ -0.38
GARNL3-216ENST00000481242 ANP32EQ9BTT0 268 aa12.7□□□□□ -0.38
GARNL3-216ENST00000481242 SMARCA2P51531 1590 aa12.7□□□□□ -0.38
GARNL3-216ENST00000481242 NPM2Q86SE8 214 aaKnown RBP12.69□□□□□ -0.38
GARNL3-216ENST00000481242 RRP7BPQ9NSQ0 103 aa12.69□□□□□ -0.38
GARNL3-216ENST00000481242 MYO15BQ96JP2 1530 aa12.68□□□□□ -0.38
GARNL3-216ENST00000481242 DDX10Q13206 875 aaKnown RBP12.67□□□□□ -0.38
GARNL3-216ENST00000481242 C14orf37Q86TY3 774 aa12.66□□□□□ -0.38
GARNL3-216ENST00000481242 CARMIL1Q5VZK9 1371 aa12.66□□□□□ -0.38
GARNL3-216ENST00000481242 UPF2Q9HAU5 1272 aaKnown RBP12.66□□□□□ -0.38
GARNL3-216ENST00000481242 HNRNPUQ00839 825 aaKnown RBP eCLIP12.65□□□□□ -0.38
GARNL3-216ENST00000481242 ANP32AP39687 249 aaKnown RBP12.65□□□□□ -0.38
GARNL3-216ENST00000481242 HDGFP51858 240 aaKnown RBP12.64□□□□□ -0.39
GARNL3-216ENST00000481242 CARMIL2Q6F5E8 1435 aa12.63□□□□□ -0.39
GARNL3-216ENST00000481242 CUX2O14529 1486 aa12.62□□□□□ -0.39
GARNL3-216ENST00000481242 CCNB3Q8WWL7 1395 aa12.62□□□□□ -0.39
GARNL3-216ENST00000481242 FAM9BQ8IZU0 186 aa12.62□□□□□ -0.39
GARNL3-216ENST00000481242 CECR2Q9BXF3 1484 aa12.62□□□□□ -0.39
GARNL3-216ENST00000481242 CFAP53Q96M91 514 aa12.61□□□□□ -0.39
GARNL3-216ENST00000481242 MRS2Q9HD23 443 aa12.6□□□□□ -0.39
GARNL3-216ENST00000481242 KANK1Q14678 1352 aa12.59□□□□□ -0.39
GARNL3-216ENST00000481242 RGL3Q3MIN7 710 aa12.57□□□□□ -0.4
GARNL3-216ENST00000481242 HAP1P54257 671 aaPredicted RBP12.56□□□□□ -0.4
GARNL3-216ENST00000481242 MYH16Q9H6N6 1097 aa12.56□□□□□ -0.4
GARNL3-216ENST00000481242 HSP90AA1P07900 732 aaKnown RBP12.55□□□□□ -0.4
GARNL3-216ENST00000481242 KNSTRNQ9Y448 316 aa12.54□□□□□ -0.4
GARNL3-216ENST00000481242 SOGA1O94964 1423 aa12.53□□□□□ -0.4
GARNL3-216ENST00000481242 TIMELESSQ9UNS1 1208 aa12.53□□□□□ -0.4
GARNL3-216ENST00000481242 TRHP20396 242 aaPredicted RBP12.52□□□□□ -0.4
GARNL3-216ENST00000481242 POGKQ9P215 609 aa12.52□□□□□ -0.4
GARNL3-216ENST00000481242 CARD11Q9BXL7 1154 aa12.52□□□□□ -0.41
GARNL3-216ENST00000481242 FKBP8Q14318 412 aa12.51□□□□□ -0.41
GARNL3-216ENST00000481242 CADPSQ9ULU8 1353 aa12.51□□□□□ -0.41
GARNL3-216ENST00000481242 EIF4G1Q04637 1599 aaKnown RBP12.51□□□□□ -0.41
GARNL3-216ENST00000481242 NUDCQ9Y266 331 aa12.5□□□□□ -0.41
GARNL3-216ENST00000481242 CCDC136Q96JN2 1154 aa12.5□□□□□ -0.41
GARNL3-216ENST00000481242 SALL2Q9Y467 1007 aaPredicted RBP12.5□□□□□ -0.41
GARNL3-216ENST00000481242 EFCAB2Q5VUJ9 269 aa12.49□□□□□ -0.41
GARNL3-216ENST00000481242 ANP32BQ92688 251 aaKnown RBP12.49□□□□□ -0.41
GARNL3-216ENST00000481242 FMN1Q68DA7 1419 aa12.49□□□□□ -0.41
GARNL3-216ENST00000481242 CCDC88BA6NC98 1476 aa12.49□□□□□ -0.41
GARNL3-216ENST00000481242 A0A0G2JS52 829 aa12.48□□□□□ -0.41
GARNL3-216ENST00000481242 EIF5BO60841 1220 aaKnown RBP12.48□□□□□ -0.41
GARNL3-216ENST00000481242 MROH2BQ7Z745 1585 aa12.47□□□□□ -0.41
GARNL3-216ENST00000481242 MIER1Q8N108 512 aa12.46□□□□□ -0.41
GARNL3-216ENST00000481242 ZBTB7CA1YPR0 619 aa12.46□□□□□ -0.41
GARNL3-216ENST00000481242 PNNQ9H307 717 aaKnown RBP12.46□□□□□ -0.41
GARNL3-216ENST00000481242 RSPH4AQ5TD94 716 aa12.45□□□□□ -0.42
GARNL3-216ENST00000481242 ABCC8Q09428 1581 aa12.43□□□□□ -0.42
GARNL3-216ENST00000481242 MAPK8IP3Q9UPT6 1336 aa12.43□□□□□ -0.42
GARNL3-216ENST00000481242 TDRD9Q8NDG6 1382 aaKnown RBP12.43□□□□□ -0.42
GARNL3-216ENST00000481242 CHMP4BQ9H444 224 aaKnown RBP12.43□□□□□ -0.42
GARNL3-216ENST00000481242 TOP2AP11388 1531 aaKnown RBP12.42□□□□□ -0.42
GARNL3-216ENST00000481242 VPS8Q8N3P4 1428 aa12.42□□□□□ -0.42
GARNL3-216ENST00000481242 TMF1P82094 1093 aa12.41□□□□□ -0.42
GARNL3-216ENST00000481242 ARHGAP35Q9NRY4 1499 aa12.41□□□□□ -0.42
GARNL3-216ENST00000481242 MS4A1P11836 297 aa12.38□□□□□ -0.43
GARNL3-216ENST00000481242 LMOD2Q6P5Q4 547 aa12.38□□□□□ -0.43
GARNL3-216ENST00000481242 ATAD2BQ9ULI0 1458 aa12.38□□□□□ -0.43
GARNL3-216ENST00000481242 PPM1GO15355 546 aaPredicted RBP12.37□□□□□ -0.43
GARNL3-216ENST00000481242 ANKRD30AQ9BXX3 1397 aa12.37□□□□□ -0.43
GARNL3-216ENST00000481242 GGT6Q6P531 493 aa12.37□□□□□ -0.43
GARNL3-216ENST00000481242 MLECQ14165 292 aa12.36□□□□□ -0.43
GARNL3-216ENST00000481242 ERICH6BQ5W0A0 696 aa12.35□□□□□ -0.43
GARNL3-216ENST00000481242 DCAF11Q8TEB1 546 aa12.35□□□□□ -0.43
GARNL3-216ENST00000481242 HIRIP3Q9BW71 556 aaPredicted RBP12.35□□□□□ -0.43
GARNL3-216ENST00000481242 SENP3Q9H4L4 574 aaPredicted RBP12.35□□□□□ -0.43
GARNL3-216ENST00000481242 RAPGEF2Q9Y4G8 1499 aa12.35□□□□□ -0.43
GARNL3-216ENST00000481242 PLEKHG5O94827 1062 aa12.35□□□□□ -0.43
GARNL3-216ENST00000481242 JPH4Q96JJ6 628 aa12.34□□□□□ -0.43
GARNL3-216ENST00000481242 SETD5Q9C0A6 1442 aa12.33□□□□□ -0.43
GARNL3-216ENST00000481242 PRKCSHP14314 528 aaPredicted RBP12.32□□□□□ -0.44
GARNL3-216ENST00000481242 FTSJ3Q8IY81 847 aaKnown RBP12.31□□□□□ -0.44
GARNL3-216ENST00000481242 CHMP4AQ9BY43 222 aa12.31□□□□□ -0.44
GARNL3-216ENST00000481242 SRPK2P78362 688 aaKnown RBP12.31□□□□□ -0.44
GARNL3-216ENST00000481242 CCDC18Q5T9S5 1454 aa12.31□□□□□ -0.44
GARNL3-216ENST00000481242 PKD2Q13563 968 aa12.3□□□□□ -0.44
GARNL3-216ENST00000481242 HDGFL2Q7Z4V5 671 aaPredicted RBP12.3□□□□□ -0.44
GARNL3-216ENST00000481242 CASC1Q6TDU7 716 aa12.3□□□□□ -0.44
GARNL3-216ENST00000481242 BECN1Q14457 450 aa12.29□□□□□ -0.44
GARNL3-216ENST00000481242 ARXQ96QS3 562 aa12.29□□□□□ -0.44
GARNL3-216ENST00000481242 SPAG9O60271 1321 aaKnown RBP12.29□□□□□ -0.44
GARNL3-216ENST00000481242 SIN3AQ96ST3 1273 aa12.28□□□□□ -0.44
GARNL3-216ENST00000481242 EID1Q9Y6B2 187 aa12.28□□□□□ -0.44
GARNL3-216ENST00000481242 NUP155O75694 1391 aa12.28□□□□□ -0.44
GARNL3-216ENST00000481242 FANCD2Q9BXW9 1451 aa12.27□□□□□ -0.45
GARNL3-216ENST00000481242 OSCARQ8IYS5 282 aa12.26□□□□□ -0.45
GARNL3-216ENST00000481242 U2SURPO15042 1029 aaKnown RBP12.26□□□□□ -0.45
GARNL3-216ENST00000481242 DDRGK1Q96HY6 314 aa12.26□□□□□ -0.45
GARNL3-216ENST00000481242 KIF3BO15066 747 aa12.25□□□□□ -0.45
GARNL3-216ENST00000481242 EIF3AQ14152 1382 aaKnown RBP12.25□□□□□ -0.45
GARNL3-216ENST00000481242 SMARCA4P51532 1647 aa12.25□□□□□ -0.45
GARNL3-216ENST00000481242 MORC1Q86VD1 984 aa12.25□□□□□ -0.45
GARNL3-216ENST00000481242 NPHP1O15259 732 aa12.25□□□□□ -0.45
GARNL3-216ENST00000481242 NCLP19338 710 aaKnown RBP12.24□□□□□ -0.45
GARNL3-216ENST00000481242 CALD1Q05682 793 aaKnown RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms