RNA–Protein interactions for RNA: ENST00000478573.6

CDC42BPA-212, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5

Gene CDC42BPA, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-212ENST00000478573 CCDC61Q9Y6R9 512 aa12.94□□□□□ -0.34
CDC42BPA-212ENST00000478573 MS4A3Q96HJ5 214 aa12.93□□□□□ -0.34
CDC42BPA-212ENST00000478573 VASPP50552 380 aaPredicted RBP12.89□□□□□ -0.35
CDC42BPA-212ENST00000478573 NUBP1P53384 320 aa12.88□□□□□ -0.35
CDC42BPA-212ENST00000478573 LHX8Q68G74 356 aa12.86□□□□□ -0.35
CDC42BPA-212ENST00000478573 KLHL34Q8N239 644 aa12.85□□□□□ -0.35
CDC42BPA-212ENST00000478573 KIF12Q96FN5 646 aa12.85□□□□□ -0.35
CDC42BPA-212ENST00000478573 FAM212AQ96EL1 285 aa12.84□□□□□ -0.35
CDC42BPA-212ENST00000478573 MAP3K13O43283 966 aa12.82□□□□□ -0.36
CDC42BPA-212ENST00000478573 DCAF8Q5TAQ9 597 aa12.78□□□□□ -0.36
CDC42BPA-212ENST00000478573 PELP1Q8IZL8 1130 aaKnown RBP12.75□□□□□ -0.37
CDC42BPA-212ENST00000478573 ATMINO43313 823 aaPredicted RBP12.74□□□□□ -0.37
CDC42BPA-212ENST00000478573 TRPC6Q9Y210 931 aa12.74□□□□□ -0.37
CDC42BPA-212ENST00000478573 PCDHB13Q9Y5F0 798 aa12.74□□□□□ -0.37
CDC42BPA-212ENST00000478573 ASTLQ6HA08 431 aaPredicted RBP12.73□□□□□ -0.37
CDC42BPA-212ENST00000478573 PYGBP11216 843 aa12.69□□□□□ -0.38
CDC42BPA-212ENST00000478573 ATN1P54259 1190 aaPredicted RBP12.69□□□□□ -0.38
CDC42BPA-212ENST00000478573 BMP2KQ9NSY1 1161 aaPredicted RBP12.68□□□□□ -0.38
CDC42BPA-212ENST00000478573 METRNQ9UJH8 293 aa12.67□□□□□ -0.38
CDC42BPA-212ENST00000478573 SGIP1Q9BQI5 828 aa12.66□□□□□ -0.38
CDC42BPA-212ENST00000478573 TIE1P35590 1138 aa12.65□□□□□ -0.38
CDC42BPA-212ENST00000478573 IFNL1Q8IU54 200 aa12.65□□□□□ -0.38
CDC42BPA-212ENST00000478573 IFNLR1Q8IU57 520 aaPredicted RBP12.65□□□□□ -0.38
CDC42BPA-212ENST00000478573 SLC39A7Q92504 469 aa12.65□□□□□ -0.38
CDC42BPA-212ENST00000478573 C7P10643 843 aa12.62□□□□□ -0.39
CDC42BPA-212ENST00000478573 GSE1Q14687 1217 aa12.62□□□□□ -0.39
CDC42BPA-212ENST00000478573 TTLL13PA6NNM8 815 aa12.61□□□□□ -0.39
CDC42BPA-212ENST00000478573 SPOCK2Q92563 424 aa12.61□□□□□ -0.39
CDC42BPA-212ENST00000478573 POTEB2H3BUK9 544 aa12.59□□□□□ -0.39
CDC42BPA-212ENST00000478573 CIZ1Q9ULV3 898 aaPredicted RBP12.57□□□□□ -0.4
CDC42BPA-212ENST00000478573 TMEM106CQ9BVX2 250 aa12.56□□□□□ -0.4
CDC42BPA-212ENST00000478573 PCDHB8Q9UN66 801 aa12.56□□□□□ -0.4
CDC42BPA-212ENST00000478573 TRIM35Q9UPQ4 493 aa12.55□□□□□ -0.4
CDC42BPA-212ENST00000478573 SEC24BO95487 1268 aa12.51□□□□□ -0.41
CDC42BPA-212ENST00000478573 OTUD5Q96G74 571 aa12.5□□□□□ -0.41
CDC42BPA-212ENST00000478573 ZNF467Q7Z7K2 595 aaPredicted RBP12.46□□□□□ -0.41
CDC42BPA-212ENST00000478573 POTEFA5A3E0 1075 aa12.45□□□□□ -0.42
CDC42BPA-212ENST00000478573 COLQQ9Y215 455 aaPredicted RBP12.44□□□□□ -0.42
CDC42BPA-212ENST00000478573 POTEJP0CG39 1038 aa12.43□□□□□ -0.42
CDC42BPA-212ENST00000478573 CHRM1P11229 460 aaPredicted RBP12.43□□□□□ -0.42
CDC42BPA-212ENST00000478573 IER5LQ5T953 404 aa12.43□□□□□ -0.42
CDC42BPA-212ENST00000478573 SCUBE2Q9NQ36 999 aa12.4□□□□□ -0.42
CDC42BPA-212ENST00000478573 MAMSTRQ6ZN01 415 aa12.39□□□□□ -0.43
CDC42BPA-212ENST00000478573 PLCG2P16885 1265 aa12.38□□□□□ -0.43
CDC42BPA-212ENST00000478573 PSEN1P49768 467 aa12.36□□□□□ -0.43
CDC42BPA-212ENST00000478573 GOLGA2Q08379 1002 aa12.36□□□□□ -0.43
CDC42BPA-212ENST00000478573 IRX5P78411 483 aaPredicted RBP12.31□□□□□ -0.44
CDC42BPA-212ENST00000478573 PDAP1Q13442 181 aaKnown RBP12.31□□□□□ -0.44
CDC42BPA-212ENST00000478573 MKRN3Q13064 507 aaKnown RBP12.3□□□□□ -0.44
CDC42BPA-212ENST00000478573 TRIM41Q8WV44 630 aa12.3□□□□□ -0.44
CDC42BPA-212ENST00000478573 OCEL1Q9H607 264 aa12.29□□□□□ -0.44
CDC42BPA-212ENST00000478573 CABP2Q9NPB3 220 aa12.24□□□□□ -0.45
CDC42BPA-212ENST00000478573 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.21□□□□□ -0.459e-8■■■□□ 15
CDC42BPA-212ENST00000478573 RIOK3O14730 519 aaKnown RBP12.18□□□□□ -0.46
CDC42BPA-212ENST00000478573 PDCD7Q8N8D1 485 aaKnown RBP12.18□□□□□ -0.46
CDC42BPA-212ENST00000478573 SLAIN1Q8ND83 568 aa12.18□□□□□ -0.46
CDC42BPA-212ENST00000478573 FAM163AQ96GL9 167 aaPredicted RBP12.17□□□□□ -0.46
CDC42BPA-212ENST00000478573 RNF25Q96BH1 459 aaPredicted RBP12.16□□□□□ -0.46
CDC42BPA-212ENST00000478573 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.12□□□□□ -0.47
CDC42BPA-212ENST00000478573 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.11□□□□□ -0.47
CDC42BPA-212ENST00000478573 POTEMA6NI47 508 aa12.11□□□□□ -0.47
CDC42BPA-212ENST00000478573 L3MBTL3Q96JM7 780 aaPredicted RBP12.11□□□□□ -0.47
CDC42BPA-212ENST00000478573 ZFP91Q96JP5 570 aaPredicted RBP12.11□□□□□ -0.47
CDC42BPA-212ENST00000478573 VGFO15240 615 aaPredicted RBP12.1□□□□□ -0.47
CDC42BPA-212ENST00000478573 ECM2O94769 699 aaPredicted RBP12.1□□□□□ -0.47
CDC42BPA-212ENST00000478573 C3orf67Q6ZVT6 689 aa12.1□□□□□ -0.47
CDC42BPA-212ENST00000478573 EFCAB3Q8N7B9 438 aa12.09□□□□□ -0.47
CDC42BPA-212ENST00000478573 DPY19L2Q6NUT2 758 aa12.08□□□□□ -0.48
CDC42BPA-212ENST00000478573 POTEGQ6S5H5 508 aa12.08□□□□□ -0.48
CDC42BPA-212ENST00000478573 G3V3G9 751 aa12.06□□□□□ -0.48
CDC42BPA-212ENST00000478573 LCE2DQ5TA82 110 aaPredicted RBP12.04□□□□□ -0.48
CDC42BPA-212ENST00000478573 ILDR1Q86SU0 546 aaPredicted RBP12.03□□□□□ -0.48
CDC42BPA-212ENST00000478573 TAOK2Q9UL54 1235 aa12.02□□□□□ -0.49
CDC42BPA-212ENST00000478573 PKD2Q13563 968 aa12.01□□□□□ -0.49
CDC42BPA-212ENST00000478573 BOLA1Q9Y3E2 137 aa12□□□□□ -0.49
CDC42BPA-212ENST00000478573 BCL11BQ9C0K0 894 aaPredicted RBP11.99□□□□□ -0.49
CDC42BPA-212ENST00000478573 STK24Q9Y6E0 443 aa11.99□□□□□ -0.49
CDC42BPA-212ENST00000478573 STK25O00506 426 aa11.97□□□□□ -0.49
CDC42BPA-212ENST00000478573 RGL2O15211 777 aa11.97□□□□□ -0.49
CDC42BPA-212ENST00000478573 SOX12O15370 315 aa11.95□□□□□ -0.5
CDC42BPA-212ENST00000478573 ST18O60284 1047 aa11.95□□□□□ -0.5
CDC42BPA-212ENST00000478573 PHF8Q9UPP1 1060 aa11.95□□□□□ -0.5
CDC42BPA-212ENST00000478573 SNPHO15079 494 aa11.94□□□□□ -0.5
CDC42BPA-212ENST00000478573 PLSCR2Q9NRY7 297 aa11.93□□□□□ -0.5
CDC42BPA-212ENST00000478573 MS4A4AQ96JQ5 239 aa11.89□□□□□ -0.51
CDC42BPA-212ENST00000478573 NLRP6P59044 892 aa11.87□□□□□ -0.51
CDC42BPA-212ENST00000478573 MICALL2Q8IY33 904 aa11.87□□□□□ -0.51
CDC42BPA-212ENST00000478573 TMEM121BQ9BXQ6 578 aaPredicted RBP11.85□□□□□ -0.51
CDC42BPA-212ENST00000478573 MARVELD3Q96A59 401 aa11.83□□□□□ -0.52
CDC42BPA-212ENST00000478573 MFRPQ9BY79 579 aa11.82□□□□□ -0.52
CDC42BPA-212ENST00000478573 PCDH10Q9P2E7 1040 aa11.82□□□□□ -0.52
CDC42BPA-212ENST00000478573 FBXO22Q8NEZ5 403 aa11.81□□□□□ -0.52
CDC42BPA-212ENST00000478573 CDAN1Q8IWY9 1227 aa11.78□□□□□ -0.52
CDC42BPA-212ENST00000478573 EMP3P54852 163 aa11.75□□□□□ -0.53
CDC42BPA-212ENST00000478573 TMEM92Q6UXU6 159 aa11.75□□□□□ -0.53
CDC42BPA-212ENST00000478573 ZNF710Q8N1W2 664 aa11.75□□□□□ -0.53
CDC42BPA-212ENST00000478573 HOXB3P14651 431 aaPredicted RBP11.74□□□□□ -0.53
CDC42BPA-212ENST00000478573 DOK7Q18PE1 504 aa11.73□□□□□ -0.53
CDC42BPA-212ENST00000478573 CHGAP10645 457 aaKnown RBP11.71□□□□□ -0.53
CDC42BPA-212ENST00000478573 HS6ST3Q8IZP7 471 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms