RNA–Protein interactions for RNA: ENST00000477334.1

RBM39-231, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 949 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-231	ENST00000477334	CCDC61	Q9Y6R9	512 aa		12.06	□□□□□ -0.48
RBM39-231	ENST00000477334	POTEI	P0CG38	1075 aa		12.04	□□□□□ -0.48
RBM39-231	ENST00000477334	VASP	P50552	380 aa	Predicted RBP	12.04	□□□□□ -0.48
RBM39-231	ENST00000477334	DCBLD2	Q96PD2	775 aa		12.04	□□□□□ -0.48
RBM39-231	ENST00000477334	NUBP1	P53384	320 aa		12.02	□□□□□ -0.49
RBM39-231	ENST00000477334	MS4A3	Q96HJ5	214 aa		11.98	□□□□□ -0.49
RBM39-231	ENST00000477334	KIF12	Q96FN5	646 aa		11.96	□□□□□ -0.49
RBM39-231	ENST00000477334	FAM212A	Q96EL1	285 aa		11.95	□□□□□ -0.5
RBM39-231	ENST00000477334	KLHL34	Q8N239	644 aa		11.91	□□□□□ -0.5
RBM39-231	ENST00000477334	MAP3K13	O43283	966 aa		11.9	□□□□□ -0.5
RBM39-231	ENST00000477334	ASTL	Q6HA08	431 aa	Predicted RBP	11.85	□□□□□ -0.51
RBM39-231	ENST00000477334	DCAF8	Q5TAQ9	597 aa		11.84	□□□□□ -0.51
RBM39-231	ENST00000477334	SGIP1	Q9BQI5	828 aa		11.84	□□□□□ -0.51
RBM39-231	ENST00000477334	ATMIN	O43313	823 aa	Predicted RBP	11.83	□□□□□ -0.52
RBM39-231	ENST00000477334	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.83	□□□□□ -0.52
RBM39-231	ENST00000477334	PCDHB13	Q9Y5F0	798 aa		11.82	□□□□□ -0.52
RBM39-231	ENST00000477334	PELP1	Q8IZL8	1130 aa	Known RBP	11.8	□□□□□ -0.52
RBM39-231	ENST00000477334	TRPC6	Q9Y210	931 aa		11.8	□□□□□ -0.52
RBM39-231	ENST00000477334	GSE1	Q14687	1217 aa		11.78	□□□□□ -0.52
RBM39-231	ENST00000477334	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.78	□□□□□ -0.52
RBM39-231	ENST00000477334	TIE1	P35590	1138 aa		11.77	□□□□□ -0.53
RBM39-231	ENST00000477334	SPOCK2	Q92563	424 aa		11.77	□□□□□ -0.53
RBM39-231	ENST00000477334	PYGB	P11216	843 aa		11.76	□□□□□ -0.53
RBM39-231	ENST00000477334	ATN1	P54259	1190 aa	Predicted RBP	11.76	□□□□□ -0.53
RBM39-231	ENST00000477334	IFNL1	Q8IU54	200 aa		11.75	□□□□□ -0.53
RBM39-231	ENST00000477334	SLC39A7	Q92504	469 aa		11.74	□□□□□ -0.53
RBM39-231	ENST00000477334	RTN4	Q9NQC3	1192 aa	Known RBP	11.73	□□□□□ -0.53
RBM39-231	ENST00000477334	C7	P10643	843 aa		11.72	□□□□□ -0.53
RBM39-231	ENST00000477334	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.72	□□□□□ -0.53
RBM39-231	ENST00000477334	METRN	Q9UJH8	293 aa		11.72	□□□□□ -0.53
RBM39-231	ENST00000477334	TTLL13P	A6NNM8	815 aa		11.71	□□□□□ -0.53
RBM39-231	ENST00000477334	POTEB2	H3BUK9	544 aa		11.66	□□□□□ -0.54
RBM39-231	ENST00000477334	CHRM1	P11229	460 aa	Predicted RBP	11.66	□□□□□ -0.54
RBM39-231	ENST00000477334	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.65	□□□□□ -0.54
RBM39-231	ENST00000477334	TMEM106C	Q9BVX2	250 aa		11.64	□□□□□ -0.55
RBM39-231	ENST00000477334	PCDHB8	Q9UN66	801 aa		11.64	□□□□□ -0.55
RBM39-231	ENST00000477334	TRIM35	Q9UPQ4	493 aa		11.64	□□□□□ -0.55
RBM39-231	ENST00000477334	ZNF467	Q7Z7K2	595 aa	Predicted RBP	11.62	□□□□□ -0.55
RBM39-231	ENST00000477334	IER5L	Q5T953	404 aa		11.59	□□□□□ -0.55
RBM39-231	ENST00000477334	POTEF	A5A3E0	1075 aa		11.57	□□□□□ -0.56
RBM39-231	ENST00000477334	OTUD5	Q96G74	571 aa		11.57	□□□□□ -0.56
RBM39-231	ENST00000477334	SEC24B	O95487	1268 aa		11.54	□□□□□ -0.56
RBM39-231	ENST00000477334	TRIM41	Q8WV44	630 aa		11.54	□□□□□ -0.56
RBM39-231	ENST00000477334	POTEJ	P0CG39	1038 aa		11.53	□□□□□ -0.56
RBM39-231	ENST00000477334	COLQ	Q9Y215	455 aa	Predicted RBP	11.53	□□□□□ -0.56
RBM39-231	ENST00000477334	PSEN1	P49768	467 aa		11.5	□□□□□ -0.57
RBM39-231	ENST00000477334	PCDH10	Q9P2E7	1040 aa		11.5	□□□□□ -0.57
RBM39-231	ENST00000477334	MAMSTR	Q6ZN01	415 aa		11.49	□□□□□ -0.57
RBM39-231	ENST00000477334	PDAP1	Q13442	181 aa	Known RBP	11.48	□□□□□ -0.57
RBM39-231	ENST00000477334	IRX5	P78411	483 aa	Predicted RBP	11.46	□□□□□ -0.57
RBM39-231	ENST00000477334	PLCG2	P16885	1265 aa		11.45	□□□□□ -0.58
RBM39-231	ENST00000477334	SCUBE2	Q9NQ36	999 aa		11.45	□□□□□ -0.58
RBM39-231	ENST00000477334	POTEM	A6NI47	508 aa		11.44	□□□□□ -0.58
RBM39-231	ENST00000477334	GOLGA2	Q08379	1002 aa		11.43	□□□□□ -0.58
RBM39-231	ENST00000477334	OCEL1	Q9H607	264 aa		11.42	□□□□□ -0.58
RBM39-231	ENST00000477334	MKRN3	Q13064	507 aa	Known RBP	11.4	□□□□□ -0.58
RBM39-231	ENST00000477334	PKD2	Q13563	968 aa		11.38	□□□□□ -0.59
RBM39-231	ENST00000477334	POTEG	Q6S5H5	508 aa		11.37	□□□□□ -0.59
RBM39-231	ENST00000477334	RNF25	Q96BH1	459 aa	Predicted RBP	11.37	□□□□□ -0.59
RBM39-231	ENST00000477334	RIOK3	O14730	519 aa	Known RBP	11.36	□□□□□ -0.59
RBM39-231	ENST00000477334	CABP2	Q9NPB3	220 aa		11.35	□□□□□ -0.59
RBM39-231	ENST00000477334	PDCD7	Q8N8D1	485 aa	Known RBP	11.34	□□□□□ -0.59
RBM39-231	ENST00000477334	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.33	□□□□□ -0.6	5e-31	■■■□□ 17.2
RBM39-231	ENST00000477334	VGF	O15240	615 aa	Predicted RBP	11.31	□□□□□ -0.6
RBM39-231	ENST00000477334	ILDR1	Q86SU0	546 aa	Predicted RBP	11.3	□□□□□ -0.6
RBM39-231	ENST00000477334	ECM2	O94769	699 aa	Predicted RBP	11.29	□□□□□ -0.6
RBM39-231	ENST00000477334	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.27	□□□□□ -0.61
RBM39-231	ENST00000477334	ZFP91	Q96JP5	570 aa	Predicted RBP	11.27	□□□□□ -0.61
RBM39-231	ENST00000477334	SLAIN1	Q8ND83	568 aa		11.25	□□□□□ -0.61
RBM39-231	ENST00000477334	DCAF8L2	P0C7V8	631 aa		11.24	□□□□□ -0.61
RBM39-231	ENST00000477334	EFCAB3	Q8N7B9	438 aa		11.24	□□□□□ -0.61
RBM39-231	ENST00000477334	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.24	□□□□□ -0.61
RBM39-231	ENST00000477334	TAOK2	Q9UL54	1235 aa		11.24	□□□□□ -0.61
RBM39-231	ENST00000477334	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.22	□□□□□ -0.61
RBM39-231	ENST00000477334	DPY19L2	Q6NUT2	758 aa		11.21	□□□□□ -0.61
RBM39-231	ENST00000477334	C3orf67	Q6ZVT6	689 aa		11.19	□□□□□ -0.62
RBM39-231	ENST00000477334	RGL2	O15211	777 aa		11.18	□□□□□ -0.62
RBM39-231	ENST00000477334	LCE2D	Q5TA82	110 aa	Predicted RBP	11.17	□□□□□ -0.62
RBM39-231	ENST00000477334	FAM163A	Q96GL9	167 aa	Predicted RBP	11.17	□□□□□ -0.62
RBM39-231	ENST00000477334	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.17	□□□□□ -0.62
RBM39-231	ENST00000477334	SOX12	O15370	315 aa		11.16	□□□□□ -0.62
RBM39-231	ENST00000477334	BOLA1	Q9Y3E2	137 aa		11.16	□□□□□ -0.62
RBM39-231	ENST00000477334		G3V3G9	751 aa		11.14	□□□□□ -0.63
RBM39-231	ENST00000477334	STK25	O00506	426 aa		11.13	□□□□□ -0.63
RBM39-231	ENST00000477334	STK24	Q9Y6E0	443 aa		11.13	□□□□□ -0.63
RBM39-231	ENST00000477334	PHF8	Q9UPP1	1060 aa		11.11	□□□□□ -0.63
RBM39-231	ENST00000477334	MS4A4A	Q96JQ5	239 aa		11.1	□□□□□ -0.63
RBM39-231	ENST00000477334	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.09	□□□□□ -0.63
RBM39-231	ENST00000477334	SNPH	O15079	494 aa		11.07	□□□□□ -0.64
RBM39-231	ENST00000477334	NLRP6	P59044	892 aa		11.06	□□□□□ -0.64
RBM39-231	ENST00000477334	ST18	O60284	1047 aa		11.05	□□□□□ -0.64
RBM39-231	ENST00000477334	FBXO22	Q8NEZ5	403 aa		11.05	□□□□□ -0.64
RBM39-231	ENST00000477334	MICALL2	Q8IY33	904 aa		11.04	□□□□□ -0.64
RBM39-231	ENST00000477334	MFRP	Q9BY79	579 aa		11.03	□□□□□ -0.64
RBM39-231	ENST00000477334	CHGA	P10645	457 aa	Known RBP	10.99	□□□□□ -0.65
RBM39-231	ENST00000477334	HS6ST3	Q8IZP7	471 aa		10.96	□□□□□ -0.65
RBM39-231	ENST00000477334	TMEM92	Q6UXU6	159 aa		10.94	□□□□□ -0.66
RBM39-231	ENST00000477334	HOXB3	P14651	431 aa	Predicted RBP	10.91	□□□□□ -0.66
RBM39-231	ENST00000477334	BBX	Q8WY36	941 aa	Predicted RBP	10.9	□□□□□ -0.66
RBM39-231	ENST00000477334	MARVELD3	Q96A59	401 aa		10.89	□□□□□ -0.67

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