RNA–Protein interactions for RNA: ENST00000474020.5

ATPAF1-204, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 535 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-204ENST00000474020 NUBP1P53384 320 aa11.48□□□□□ -0.57
ATPAF1-204ENST00000474020 PHF12Q96QT6 1004 aa11.47□□□□□ -0.57
ATPAF1-204ENST00000474020 CCDC61Q9Y6R9 512 aa11.46□□□□□ -0.57
ATPAF1-204ENST00000474020 KLHL34Q8N239 644 aa11.42□□□□□ -0.58
ATPAF1-204ENST00000474020 GALR2O43603 387 aaPredicted RBP11.41□□□□□ -0.58
ATPAF1-204ENST00000474020 FAM212AQ96EL1 285 aa11.4□□□□□ -0.58
ATPAF1-204ENST00000474020 IFNLR1Q8IU57 520 aaPredicted RBP11.38□□□□□ -0.59
ATPAF1-204ENST00000474020 DCBLD2Q96PD2 775 aa11.37□□□□□ -0.59
ATPAF1-204ENST00000474020 KIF12Q96FN5 646 aa11.36□□□□□ -0.59
ATPAF1-204ENST00000474020 POTEIP0CG38 1075 aa11.35□□□□□ -0.59
ATPAF1-204ENST00000474020 MS4A3Q96HJ5 214 aa11.35□□□□□ -0.59
ATPAF1-204ENST00000474020 DCAF8Q5TAQ9 597 aa11.32□□□□□ -0.6
ATPAF1-204ENST00000474020 MAP3K13O43283 966 aa11.3□□□□□ -0.6
ATPAF1-204ENST00000474020 SPOCK2Q92563 424 aa11.3□□□□□ -0.6
ATPAF1-204ENST00000474020 GSE1Q14687 1217 aa11.28□□□□□ -0.6
ATPAF1-204ENST00000474020 SGIP1Q9BQI5 828 aa11.27□□□□□ -0.61
ATPAF1-204ENST00000474020 PCDHB13Q9Y5F0 798 aa11.24□□□□□ -0.61
ATPAF1-204ENST00000474020 POTEMA6NI47 508 aa11.21□□□□□ -0.61
ATPAF1-204ENST00000474020 PYGBP11216 843 aa11.21□□□□□ -0.61
ATPAF1-204ENST00000474020 ASTLQ6HA08 431 aaPredicted RBP11.21□□□□□ -0.61
ATPAF1-204ENST00000474020 TRPC6Q9Y210 931 aa11.19□□□□□ -0.62
ATPAF1-204ENST00000474020 ATMINO43313 823 aaPredicted RBP11.18□□□□□ -0.62
ATPAF1-204ENST00000474020 TIE1P35590 1138 aa11.18□□□□□ -0.62
ATPAF1-204ENST00000474020 IFNL1Q8IU54 200 aa11.18□□□□□ -0.62
ATPAF1-204ENST00000474020 PCDH10Q9P2E7 1040 aa11.17□□□□□ -0.62
ATPAF1-204ENST00000474020 BMP2KQ9NSY1 1161 aaPredicted RBP11.16□□□□□ -0.62
ATPAF1-204ENST00000474020 CIZ1Q9ULV3 898 aaPredicted RBP11.16□□□□□ -0.62
ATPAF1-204ENST00000474020 CHRM1P11229 460 aaPredicted RBP11.15□□□□□ -0.62
ATPAF1-204ENST00000474020 PELP1Q8IZL8 1130 aaKnown RBP11.14□□□□□ -0.63
ATPAF1-204ENST00000474020 ATN1P54259 1190 aaPredicted RBP11.13□□□□□ -0.63
ATPAF1-204ENST00000474020 POTEGQ6S5H5 508 aa11.13□□□□□ -0.63
ATPAF1-204ENST00000474020 TTLL13PA6NNM8 815 aa11.11□□□□□ -0.63
ATPAF1-204ENST00000474020 OTUD5Q96G74 571 aa11.11□□□□□ -0.63
ATPAF1-204ENST00000474020 SLC39A7Q92504 469 aa11.1□□□□□ -0.63
ATPAF1-204ENST00000474020 ZNF467Q7Z7K2 595 aaPredicted RBP11.09□□□□□ -0.63
ATPAF1-204ENST00000474020 PCDHB8Q9UN66 801 aa11.09□□□□□ -0.63
ATPAF1-204ENST00000474020 C7P10643 843 aa11.08□□□□□ -0.64
ATPAF1-204ENST00000474020 TRIM41Q8WV44 630 aa11.08□□□□□ -0.64
ATPAF1-204ENST00000474020 METRNQ9UJH8 293 aa11.06□□□□□ -0.64
ATPAF1-204ENST00000474020 TMEM106CQ9BVX2 250 aa11.05□□□□□ -0.64
ATPAF1-204ENST00000474020 TRIM35Q9UPQ4 493 aa11.03□□□□□ -0.64
ATPAF1-204ENST00000474020 IER5LQ5T953 404 aa10.99□□□□□ -0.65
ATPAF1-204ENST00000474020 POTEB2H3BUK9 544 aa10.97□□□□□ -0.65
ATPAF1-204ENST00000474020 PSEN1P49768 467 aa10.97□□□□□ -0.65
ATPAF1-204ENST00000474020 PDAP1Q13442 181 aaKnown RBP10.96□□□□□ -0.65
ATPAF1-204ENST00000474020 POTEFA5A3E0 1075 aa10.94□□□□□ -0.66
ATPAF1-204ENST00000474020 SEC24BO95487 1268 aa10.93□□□□□ -0.66
ATPAF1-204ENST00000474020 COLQQ9Y215 455 aaPredicted RBP10.91□□□□□ -0.66
ATPAF1-204ENST00000474020 RNF25Q96BH1 459 aaPredicted RBP10.9□□□□□ -0.66
ATPAF1-204ENST00000474020 RIOK3O14730 519 aaKnown RBP10.89□□□□□ -0.67
ATPAF1-204ENST00000474020 MAMSTRQ6ZN01 415 aa10.89□□□□□ -0.67
ATPAF1-204ENST00000474020 IRX5P78411 483 aaPredicted RBP10.88□□□□□ -0.67
ATPAF1-204ENST00000474020 ECM2O94769 699 aaPredicted RBP10.87□□□□□ -0.67
ATPAF1-204ENST00000474020 POTEJP0CG39 1038 aa10.87□□□□□ -0.67
ATPAF1-204ENST00000474020 GOLGA2Q08379 1002 aa10.87□□□□□ -0.67
ATPAF1-204ENST00000474020 PKD2Q13563 968 aa10.87□□□□□ -0.67
ATPAF1-204ENST00000474020 PLCG2P16885 1265 aa10.86□□□□□ -0.67
ATPAF1-204ENST00000474020 MKRN3Q13064 507 aaKnown RBP10.85□□□□□ -0.67
ATPAF1-204ENST00000474020 VGFO15240 615 aaPredicted RBP10.84□□□□□ -0.67
ATPAF1-204ENST00000474020 OCEL1Q9H607 264 aa10.84□□□□□ -0.67
ATPAF1-204ENST00000474020 CABP2Q9NPB3 220 aa10.82□□□□□ -0.68
ATPAF1-204ENST00000474020 SCUBE2Q9NQ36 999 aa10.82□□□□□ -0.68
ATPAF1-204ENST00000474020 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.8□□□□□ -0.68
ATPAF1-204ENST00000474020 ZFP91Q96JP5 570 aaPredicted RBP10.8□□□□□ -0.68
ATPAF1-204ENST00000474020 TAOK2Q9UL54 1235 aa10.8□□□□□ -0.68
ATPAF1-204ENST00000474020 PDCD7Q8N8D1 485 aaKnown RBP10.77□□□□□ -0.69
ATPAF1-204ENST00000474020 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.77□□□□□ -0.69
ATPAF1-204ENST00000474020 RGL2O15211 777 aa10.76□□□□□ -0.69
ATPAF1-204ENST00000474020 ILDR1Q86SU0 546 aaPredicted RBP10.76□□□□□ -0.69
ATPAF1-204ENST00000474020 EFCAB3Q8N7B9 438 aa10.74□□□□□ -0.69
ATPAF1-204ENST00000474020 LCE2DQ5TA82 110 aaPredicted RBP10.72□□□□□ -0.69
ATPAF1-204ENST00000474020 FAM163AQ96GL9 167 aaPredicted RBP10.7□□□□□ -0.7
ATPAF1-204ENST00000474020 BCL11BQ9C0K0 894 aaPredicted RBP10.7□□□□□ -0.7
ATPAF1-204ENST00000474020 L3MBTL3Q96JM7 780 aaPredicted RBP10.69□□□□□ -0.7
ATPAF1-204ENST00000474020 STK25O00506 426 aa10.68□□□□□ -0.7
ATPAF1-204ENST00000474020 SOX12O15370 315 aa10.68□□□□□ -0.7
ATPAF1-204ENST00000474020 STK24Q9Y6E0 443 aa10.68□□□□□ -0.7
ATPAF1-204ENST00000474020 DPY19L2Q6NUT2 758 aa10.65□□□□□ -0.7
ATPAF1-204ENST00000474020 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.63□□□□□ -0.71
ATPAF1-204ENST00000474020 CCDC180Q9P1Z9 1646 aa10.62□□□□□ -0.71
ATPAF1-204ENST00000474020 SLAIN1Q8ND83 568 aa10.62□□□□□ -0.71
ATPAF1-204ENST00000474020 G3V3G9 751 aa10.61□□□□□ -0.71
ATPAF1-204ENST00000474020 C3orf67Q6ZVT6 689 aa10.61□□□□□ -0.71
ATPAF1-204ENST00000474020 PHF8Q9UPP1 1060 aa10.61□□□□□ -0.71
ATPAF1-204ENST00000474020 BOLA1Q9Y3E2 137 aa10.6□□□□□ -0.71
ATPAF1-204ENST00000474020 MS4A4AQ96JQ5 239 aa10.59□□□□□ -0.71
ATPAF1-204ENST00000474020 NLRP6P59044 892 aa10.58□□□□□ -0.72
ATPAF1-204ENST00000474020 CDAN1Q8IWY9 1227 aa10.57□□□□□ -0.72
ATPAF1-204ENST00000474020 FBXO22Q8NEZ5 403 aa10.57□□□□□ -0.72
ATPAF1-204ENST00000474020 HS6ST3Q8IZP7 471 aa10.56□□□□□ -0.72
ATPAF1-204ENST00000474020 MFRPQ9BY79 579 aa10.56□□□□□ -0.72
ATPAF1-204ENST00000474020 TMEM121BQ9BXQ6 578 aaPredicted RBP10.55□□□□□ -0.72
ATPAF1-204ENST00000474020 SNPHO15079 494 aa10.51□□□□□ -0.73
ATPAF1-204ENST00000474020 CHGAP10645 457 aaKnown RBP10.51□□□□□ -0.73
ATPAF1-204ENST00000474020 MICALL2Q8IY33 904 aa10.51□□□□□ -0.73
ATPAF1-204ENST00000474020 DNAJC5Q9H3Z4 198 aa10.47□□□□□ -0.73
ATPAF1-204ENST00000474020 AMER1Q5JTC6 1135 aaPredicted RBP10.45□□□□□ -0.74
ATPAF1-204ENST00000474020 ST18O60284 1047 aa10.41□□□□□ -0.74
ATPAF1-204ENST00000474020 DCAF8L2P0C7V8 631 aa10.41□□□□□ -0.74
ATPAF1-204ENST00000474020 TMEM92Q6UXU6 159 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms