RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 MNX1P50219 401 aaPredicted RBP8.97□□□□□ -0.97
SF3B1-208ENST00000470268 PROM2Q8N271 834 aa8.96□□□□□ -0.98
SF3B1-208ENST00000470268 PHF12Q96QT6 1004 aa8.94□□□□□ -0.98
SF3B1-208ENST00000470268 SHROOM4Q9ULL8 1493 aa8.93□□□□□ -0.98
SF3B1-208ENST00000470268 SCRIBQ14160 1630 aa8.92□□□□□ -0.98
SF3B1-208ENST00000470268 PLEKHG5O94827 1062 aa8.88□□□□□ -0.99
SF3B1-208ENST00000470268 UNC13AQ9UPW8 1703 aa8.85□□□□□ -0.99
SF3B1-208ENST00000470268 ASTLQ6HA08 431 aaPredicted RBP8.84□□□□□ -0.99
SF3B1-208ENST00000470268 PLSCR2Q9NRY7 297 aa8.84□□□□□ -0.99
SF3B1-208ENST00000470268 AMER1Q5JTC6 1135 aaPredicted RBP8.83□□□□□ -1
SF3B1-208ENST00000470268 MS4A3Q96HJ5 214 aa8.83□□□□□ -1
SF3B1-208ENST00000470268 SLC39A7Q92504 469 aa8.83□□□□□ -1
SF3B1-208ENST00000470268 C7P10643 843 aa8.82□□□□□ -1
SF3B1-208ENST00000470268 BICRAQ9NZM4 1560 aa8.82□□□□□ -1
SF3B1-208ENST00000470268 OTUD5Q96G74 571 aa8.81□□□□□ -1
SF3B1-208ENST00000470268 ATMINO43313 823 aaPredicted RBP8.81□□□□□ -1
SF3B1-208ENST00000470268 TSPYL2Q9H2G4 693 aaPredicted RBP8.81□□□□□ -1
SF3B1-208ENST00000470268 PELP1Q8IZL8 1130 aaKnown RBP8.8□□□□□ -1
SF3B1-208ENST00000470268 CCDC61Q9Y6R9 512 aa8.8□□□□□ -1
SF3B1-208ENST00000470268 POTEB2H3BUK9 544 aa8.78□□□□□ -1
SF3B1-208ENST00000470268 MIER1Q8N108 512 aa8.78□□□□□ -1
SF3B1-208ENST00000470268 RTN4Q9NQC3 1192 aaKnown RBP8.78□□□□□ -1
SF3B1-208ENST00000470268 METRNQ9UJH8 293 aa8.78□□□□□ -1
SF3B1-208ENST00000470268 MAMSTRQ6ZN01 415 aa8.77□□□□□ -1.01
SF3B1-208ENST00000470268 KIF12Q96FN5 646 aa8.76□□□□□ -1.01
SF3B1-208ENST00000470268 FBXO3Q9UK99 471 aa8.76□□□□□ -1.01
SF3B1-208ENST00000470268 ZBTB47Q9UFB7 747 aaPredicted RBP8.73□□□□□ -1.01
SF3B1-208ENST00000470268 TIE1P35590 1138 aa8.71□□□□□ -1.02
SF3B1-208ENST00000470268 PLCD3Q8N3E9 789 aa8.71□□□□□ -1.02
SF3B1-208ENST00000470268 ATN1P54259 1190 aaPredicted RBP8.7□□□□□ -1.02
SF3B1-208ENST00000470268 SGIP1Q9BQI5 828 aa8.7□□□□□ -1.02
SF3B1-208ENST00000470268 RASEFQ8IZ41 740 aa8.69□□□□□ -1.02
SF3B1-208ENST00000470268 MAP3K13O43283 966 aa8.68□□□□□ -1.02
SF3B1-208ENST00000470268 BMP2KQ9NSY1 1161 aaPredicted RBP8.68□□□□□ -1.02
SF3B1-208ENST00000470268 SCUBE2Q9NQ36 999 aa8.67□□□□□ -1.02
SF3B1-208ENST00000470268 CECR2Q9BXF3 1484 aa8.65□□□□□ -1.02
SF3B1-208ENST00000470268 POTEMA6NI47 508 aa8.64□□□□□ -1.03
SF3B1-208ENST00000470268 PCDH10Q9P2E7 1040 aa8.64□□□□□ -1.03
SF3B1-208ENST00000470268 POTEJP0CG39 1038 aa8.64□□□□□ -1.03
SF3B1-208ENST00000470268 POTEGQ6S5H5 508 aa8.63□□□□□ -1.03
SF3B1-208ENST00000470268 NUBP1P53384 320 aa8.61□□□□□ -1.03
SF3B1-208ENST00000470268 TRPC6Q9Y210 931 aa8.61□□□□□ -1.03
SF3B1-208ENST00000470268 VASPP50552 380 aaPredicted RBP8.61□□□□□ -1.03
SF3B1-208ENST00000470268 IER5LQ5T953 404 aa8.61□□□□□ -1.03
SF3B1-208ENST00000470268 TTLL13PA6NNM8 815 aa8.6□□□□□ -1.03
SF3B1-208ENST00000470268 PCDHB13Q9Y5F0 798 aa8.6□□□□□ -1.03
SF3B1-208ENST00000470268 FAM212AQ96EL1 285 aa8.59□□□□□ -1.03
SF3B1-208ENST00000470268 SEC24BO95487 1268 aa8.59□□□□□ -1.03
SF3B1-208ENST00000470268 POTEFA5A3E0 1075 aa8.58□□□□□ -1.04
SF3B1-208ENST00000470268 MROH2BQ7Z745 1585 aa8.56□□□□□ -1.04
SF3B1-208ENST00000470268 EIF4G1Q04637 1599 aaKnown RBP8.55□□□□□ -1.04
SF3B1-208ENST00000470268 BAZ1AQ9NRL2 1556 aaPredicted RBP8.55□□□□□ -1.04
SF3B1-208ENST00000470268 TRIM35Q9UPQ4 493 aa8.54□□□□□ -1.04
SF3B1-208ENST00000470268 RSF1Q96T23 1441 aaPredicted RBP8.54□□□□□ -1.04
SF3B1-208ENST00000470268 SMARCA4P51532 1647 aa8.54□□□□□ -1.04
SF3B1-208ENST00000470268 FAM163AQ96GL9 167 aaPredicted RBP8.53□□□□□ -1.04
SF3B1-208ENST00000470268 COLQQ9Y215 455 aaPredicted RBP8.53□□□□□ -1.04
SF3B1-208ENST00000470268 IFNL1Q8IU54 200 aa8.52□□□□□ -1.05
SF3B1-208ENST00000470268 IFNLR1Q8IU57 520 aaPredicted RBP8.51□□□□□ -1.05
SF3B1-208ENST00000470268 TMEM106CQ9BVX2 250 aa8.5□□□□□ -1.05
SF3B1-208ENST00000470268 SUPT5HO00267 1087 aaKnown RBP8.49□□□□□ -1.05
SF3B1-208ENST00000470268 DCAF8Q5TAQ9 597 aa8.49□□□□□ -1.05
SF3B1-208ENST00000470268 LCE2DQ5TA82 110 aaPredicted RBP8.48□□□□□ -1.05
SF3B1-208ENST00000470268 PLCG2P16885 1265 aa8.47□□□□□ -1.05
SF3B1-208ENST00000470268 ATAD2BQ9ULI0 1458 aa8.47□□□□□ -1.05
SF3B1-208ENST00000470268 CC2D2AQ9P2K1 1620 aa8.47□□□□□ -1.05
SF3B1-208ENST00000470268 WIZO95785 1651 aa8.46□□□□□ -1.05
SF3B1-208ENST00000470268 PEG3Q9GZU2 1588 aa8.45□□□□□ -1.06
SF3B1-208ENST00000470268 IRX5P78411 483 aaPredicted RBP8.42□□□□□ -1.06
SF3B1-208ENST00000470268 GSE1Q14687 1217 aa8.42□□□□□ -1.06
SF3B1-208ENST00000470268 NCAPD3P42695 1498 aa8.42□□□□□ -1.06
SF3B1-208ENST00000470268 SLAIN1Q8ND83 568 aa8.42□□□□□ -1.06
SF3B1-208ENST00000470268 OCEL1Q9H607 264 aa8.42□□□□□ -1.06
SF3B1-208ENST00000470268 SMARCA2P51531 1590 aa8.42□□□□□ -1.06
SF3B1-208ENST00000470268 PYGBP11216 843 aa8.41□□□□□ -1.06
SF3B1-208ENST00000470268 SLC24A1O60721 1099 aa8.4□□□□□ -1.06
SF3B1-208ENST00000470268 BAZ1BQ9UIG0 1483 aaKnown RBP8.38□□□□□ -1.07
SF3B1-208ENST00000470268 ZNF467Q7Z7K2 595 aaPredicted RBP8.38□□□□□ -1.07
SF3B1-208ENST00000470268 KLHL34Q8N239 644 aa8.38□□□□□ -1.07
SF3B1-208ENST00000470268 HMGXB3Q12766 1538 aa8.37□□□□□ -1.07
SF3B1-208ENST00000470268 CHRM1P11229 460 aaPredicted RBP8.37□□□□□ -1.07
SF3B1-208ENST00000470268 SPOCK2Q92563 424 aa8.37□□□□□ -1.07
SF3B1-208ENST00000470268 SNPHO15079 494 aa8.36□□□□□ -1.07
SF3B1-208ENST00000470268 PCDHB8Q9UN66 801 aa8.36□□□□□ -1.07
SF3B1-208ENST00000470268 TOP2AP11388 1531 aaKnown RBP8.36□□□□□ -1.07
SF3B1-208ENST00000470268 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.35□□□□□ -1.07
SF3B1-208ENST00000470268 CDAN1Q8IWY9 1227 aa8.34□□□□□ -1.07
SF3B1-208ENST00000470268 ST18O60284 1047 aa8.34□□□□□ -1.07
SF3B1-208ENST00000470268 PKD2Q13563 968 aa8.34□□□□□ -1.07
SF3B1-208ENST00000470268 GOLGA2Q08379 1002 aa8.32□□□□□ -1.08
SF3B1-208ENST00000470268 TMEM121BQ9BXQ6 578 aaPredicted RBP8.32□□□□□ -1.08
SF3B1-208ENST00000470268 MKRN3Q13064 507 aaKnown RBP8.31□□□□□ -1.08
SF3B1-208ENST00000470268 L3MBTL3Q96JM7 780 aaPredicted RBP8.31□□□□□ -1.08
SF3B1-208ENST00000470268 CCDC88BA6NC98 1476 aa8.3□□□□□ -1.08
SF3B1-208ENST00000470268 PSEN1P49768 467 aa8.27□□□□□ -1.09
SF3B1-208ENST00000470268 PDCD7Q8N8D1 485 aaKnown RBP8.26□□□□□ -1.09
SF3B1-208ENST00000470268 C3orf67Q6ZVT6 689 aa8.25□□□□□ -1.09
SF3B1-208ENST00000470268 PDAP1Q13442 181 aaKnown RBP8.24□□□□□ -1.09
SF3B1-208ENST00000470268 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.24□□□□□ -1.092e-26■■□□□ 13.3
SF3B1-208ENST00000470268 ECM2O94769 699 aaPredicted RBP8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms