RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 BBXQ8WY36 941 aaPredicted RBP8.12□□□□□ -1.11
COL3A1-205ENST00000470167 REM2Q8IYK8 340 aaPredicted RBP8.11□□□□□ -1.11
COL3A1-205ENST00000470167 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.1□□□□□ -1.11
COL3A1-205ENST00000470167 PRR29P0C7W0 189 aa8.09□□□□□ -1.11
COL3A1-205ENST00000470167 NUBP1P53384 320 aa8.09□□□□□ -1.11
COL3A1-205ENST00000470167 CREBZFQ9NS37 354 aa8.09□□□□□ -1.11
COL3A1-205ENST00000470167 PAXIP1Q6ZW49 1069 aaPredicted RBP8.08□□□□□ -1.12
COL3A1-205ENST00000470167 UBE2Q2Q8WVN8 375 aa8.07□□□□□ -1.12
COL3A1-205ENST00000470167 CFAP44Q96MT7 982 aa8.07□□□□□ -1.12
COL3A1-205ENST00000470167 CHGAP10645 457 aaKnown RBP8.06□□□□□ -1.12
COL3A1-205ENST00000470167 GSE1Q14687 1217 aa8.06□□□□□ -1.12
COL3A1-205ENST00000470167 TRIM41Q8WV44 630 aa8.06□□□□□ -1.12
COL3A1-205ENST00000470167 MNX1P50219 401 aaPredicted RBP8.05□□□□□ -1.12
COL3A1-205ENST00000470167 RNF25Q96BH1 459 aaPredicted RBP8.05□□□□□ -1.12
COL3A1-205ENST00000470167 PITPNM1O00562 1244 aa8.03□□□□□ -1.12
COL3A1-205ENST00000470167 DCAF8Q5TAQ9 597 aa8.03□□□□□ -1.12
COL3A1-205ENST00000470167 VSIG10Q8N0Z9 540 aa8.01□□□□□ -1.13
COL3A1-205ENST00000470167 FAM212AQ96EL1 285 aa8.01□□□□□ -1.13
COL3A1-205ENST00000470167 PODXL2Q9NZ53 605 aa8.01□□□□□ -1.13
COL3A1-205ENST00000470167 SPRYD3Q8NCJ5 442 aa8□□□□□ -1.13
COL3A1-205ENST00000470167 TULP1O00294 542 aaPredicted RBP7.99□□□□□ -1.13
COL3A1-205ENST00000470167 RASEFQ8IZ41 740 aa7.99□□□□□ -1.13
COL3A1-205ENST00000470167 HS6ST3Q8IZP7 471 aa7.99□□□□□ -1.13
COL3A1-205ENST00000470167 CENPBP07199 599 aaPredicted RBP7.98□□□□□ -1.13
COL3A1-205ENST00000470167 CHRDL2Q6WN34 429 aa7.98□□□□□ -1.13
COL3A1-205ENST00000470167 HRCP23327 699 aa7.97□□□□□ -1.13
COL3A1-205ENST00000470167 KDM2AQ9Y2K7 1162 aa7.97□□□□□ -1.13
COL3A1-205ENST00000470167 RIOK3O14730 519 aaKnown RBP7.96□□□□□ -1.14
COL3A1-205ENST00000470167 TSHZ2Q9NRE2 1034 aa7.95□□□□□ -1.14
COL3A1-205ENST00000470167 CHADLQ6NUI6 762 aa7.93□□□□□ -1.14
COL3A1-205ENST00000470167 BCANQ96GW7 911 aa7.92□□□□□ -1.14
COL3A1-205ENST00000470167 TAOK2Q9UL54 1235 aa7.92□□□□□ -1.14
COL3A1-205ENST00000470167 PYGBP11216 843 aa7.91□□□□□ -1.14
COL3A1-205ENST00000470167 STK25O00506 426 aa7.9□□□□□ -1.14
COL3A1-205ENST00000470167 VGFO15240 615 aaPredicted RBP7.9□□□□□ -1.14
COL3A1-205ENST00000470167 CHRM1P11229 460 aaPredicted RBP7.9□□□□□ -1.14
COL3A1-205ENST00000470167 NKX1-1Q15270 411 aaPredicted RBP7.9□□□□□ -1.14
COL3A1-205ENST00000470167 DNAJC5Q9H3Z4 198 aa7.9□□□□□ -1.14
COL3A1-205ENST00000470167 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.86□□□□□ -1.15
COL3A1-205ENST00000470167 PDIA4P13667 645 aaKnown RBP7.86□□□□□ -1.15
COL3A1-205ENST00000470167 ZFP91Q96JP5 570 aaPredicted RBP7.86□□□□□ -1.15
COL3A1-205ENST00000470167 TSPYL2Q9H2G4 693 aaPredicted RBP7.86□□□□□ -1.15
COL3A1-205ENST00000470167 BCL11BQ9C0K0 894 aaPredicted RBP7.85□□□□□ -1.15
COL3A1-205ENST00000470167 FARP1Q9Y4F1 1045 aaPredicted RBP7.85□□□□□ -1.15
COL3A1-205ENST00000470167 STK24Q9Y6E0 443 aa7.85□□□□□ -1.15
COL3A1-205ENST00000470167 GTPBP6O43824 516 aaPredicted RBP7.84□□□□□ -1.15
COL3A1-205ENST00000470167 PRKAR2AP13861 404 aaKnown RBP7.83□□□□□ -1.16
COL3A1-205ENST00000470167 SGIP1Q9BQI5 828 aa7.83□□□□□ -1.16
COL3A1-205ENST00000470167 NPM2Q86SE8 214 aaKnown RBP7.82□□□□□ -1.16
COL3A1-205ENST00000470167 PKNOX2Q96KN3 472 aa7.82□□□□□ -1.16
COL3A1-205ENST00000470167 NEFLP07196 543 aa7.79□□□□□ -1.16
COL3A1-205ENST00000470167 ANP32EQ9BTT0 268 aa7.79□□□□□ -1.16
COL3A1-205ENST00000470167 FXR2P51116 673 aaKnown RBP eCLIP7.78□□□□□ -1.16
COL3A1-205ENST00000470167 ZNF467Q7Z7K2 595 aaPredicted RBP7.77□□□□□ -1.17
COL3A1-205ENST00000470167 PIP4P2Q8N4L2 257 aa7.77□□□□□ -1.17
COL3A1-205ENST00000470167 CCDC61Q9Y6R9 512 aa7.77□□□□□ -1.17
COL3A1-205ENST00000470167 PCDHB8Q9UN66 801 aa7.76□□□□□ -1.17
COL3A1-205ENST00000470167 PCDHB13Q9Y5F0 798 aa7.76□□□□□ -1.17
COL3A1-205ENST00000470167 GTF3C3Q9Y5Q9 886 aa7.75□□□□□ -1.17
COL3A1-205ENST00000470167 PDE4CQ08493 712 aa7.74□□□□□ -1.17
COL3A1-205ENST00000470167 SP7Q8TDD2 431 aaPredicted RBP7.74□□□□□ -1.17
COL3A1-205ENST00000470167 PDAP1Q13442 181 aaKnown RBP7.73□□□□□ -1.17
COL3A1-205ENST00000470167 RYDENQ9NUL5 291 aaKnown RBP7.72□□□□□ -1.17
COL3A1-205ENST00000470167 TPRNQ4KMQ1 711 aa7.71□□□□□ -1.18
COL3A1-205ENST00000470167 HAX1O00165 279 aa7.7□□□□□ -1.18
COL3A1-205ENST00000470167 PAK3O75914 559 aaPredicted RBP7.7□□□□□ -1.18
COL3A1-205ENST00000470167 PSEN1P49768 467 aa7.7□□□□□ -1.18
COL3A1-205ENST00000470167 NBR1Q14596 966 aa7.7□□□□□ -1.18
COL3A1-205ENST00000470167 ZNF579Q8NAF0 562 aaKnown RBP7.7□□□□□ -1.18
COL3A1-205ENST00000470167 TAF7LQ5H9L4 462 aa7.69□□□□□ -1.18
COL3A1-205ENST00000470167 C14orf37Q86TY3 774 aa7.68□□□□□ -1.18
COL3A1-205ENST00000470167 IFNL1Q8IU54 200 aa7.68□□□□□ -1.18
COL3A1-205ENST00000470167 MAP3K13O43283 966 aa7.67□□□□□ -1.18
COL3A1-205ENST00000470167 KIF12Q96FN5 646 aa7.66□□□□□ -1.18
COL3A1-205ENST00000470167 ANO8Q9HCE9 1232 aaPredicted RBP7.66□□□□□ -1.18
COL3A1-205ENST00000470167 MFRPQ9BY79 579 aa7.65□□□□□ -1.18
COL3A1-205ENST00000470167 BRD2P25440 801 aaKnown RBP7.64□□□□□ -1.19
COL3A1-205ENST00000470167 CADPS2Q86UW7 1296 aa7.64□□□□□ -1.19
COL3A1-205ENST00000470167 LOC105371045A0A1W2PR82 267 aa7.63□□□□□ -1.19
COL3A1-205ENST00000470167 ERICH6BQ5W0A0 696 aa7.63□□□□□ -1.19
COL3A1-205ENST00000470167 ZRANB1Q9UGI0 708 aa7.63□□□□□ -1.19
COL3A1-205ENST00000470167 CD44P16070 742 aaKnown RBP7.62□□□□□ -1.19
COL3A1-205ENST00000470167 FGD1P98174 961 aa7.62□□□□□ -1.19
COL3A1-205ENST00000470167 PHF12Q96QT6 1004 aa7.62□□□□□ -1.19
COL3A1-205ENST00000470167 CABP2Q9NPB3 220 aa7.62□□□□□ -1.19
COL3A1-205ENST00000470167 EFCAB3Q8N7B9 438 aa7.61□□□□□ -1.19
COL3A1-205ENST00000470167 CDK11AQ9UQ88 783 aaPredicted RBP7.61□□□□□ -1.19
COL3A1-205ENST00000470167 CHMP4AQ9BY43 222 aa7.6□□□□□ -1.19
COL3A1-205ENST00000470167 PPP1R37O75864 691 aa7.58□□□□□ -1.2
COL3A1-205ENST00000470167 FBXO22Q8NEZ5 403 aa7.58□□□□□ -1.2
COL3A1-205ENST00000470167 PHF8Q9UPP1 1060 aa7.58□□□□□ -1.2
COL3A1-205ENST00000470167 ACIN1Q9UKV3 1341 aaKnown RBP7.57□□□□□ -1.2
COL3A1-205ENST00000470167 TMEM132AQ24JP5 1023 aa7.57□□□□□ -1.2
COL3A1-205ENST00000470167 NLRP6P59044 892 aa7.56□□□□□ -1.2
COL3A1-205ENST00000470167 P3H3Q8IVL6 736 aa7.56□□□□□ -1.2
COL3A1-205ENST00000470167 WDR70Q9NW82 654 aa7.56□□□□□ -1.2
COL3A1-205ENST00000470167 SOX12O15370 315 aa7.55□□□□□ -1.2
COL3A1-205ENST00000470167 EVX2Q03828 476 aa7.55□□□□□ -1.2
COL3A1-205ENST00000470167 KCNV2Q8TDN2 545 aa7.55□□□□□ -1.2
COL3A1-205ENST00000470167 TRPC6Q9Y210 931 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms