RNA–Protein interactions for RNA: ENST00000467263.1

SMC4-207, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 401 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-207ENST00000467263 PLCD3Q8N3E9 789 aa14.35□□□□□ -0.11
SMC4-207ENST00000467263 PLEKHG5O94827 1062 aa14.3□□□□□ -0.12
SMC4-207ENST00000467263 KIF12Q96FN5 646 aa14.29□□□□□ -0.12
SMC4-207ENST00000467263 POTEB2H3BUK9 544 aa14.28□□□□□ -0.12
SMC4-207ENST00000467263 TRPC6Q9Y210 931 aa14.26□□□□□ -0.13
SMC4-207ENST00000467263 NUBP1P53384 320 aa14.25□□□□□ -0.13
SMC4-207ENST00000467263 MAP3K13O43283 966 aa14.24□□□□□ -0.13
SMC4-207ENST00000467263 ATMINO43313 823 aaPredicted RBP14.24□□□□□ -0.13
SMC4-207ENST00000467263 ASTLQ6HA08 431 aaPredicted RBP14.23□□□□□ -0.13
SMC4-207ENST00000467263 ATN1P54259 1190 aaPredicted RBP14.17□□□□□ -0.14
SMC4-207ENST00000467263 OTUD5Q96G74 571 aa14.14□□□□□ -0.15
SMC4-207ENST00000467263 BMP2KQ9NSY1 1161 aaPredicted RBP14.14□□□□□ -0.15
SMC4-207ENST00000467263 METRNQ9UJH8 293 aa14.13□□□□□ -0.15
SMC4-207ENST00000467263 ZBTB47Q9UFB7 747 aaPredicted RBP14.12□□□□□ -0.15
SMC4-207ENST00000467263 POTEJP0CG39 1038 aa14.09□□□□□ -0.15
SMC4-207ENST00000467263 FBXO3Q9UK99 471 aa14.08□□□□□ -0.16
SMC4-207ENST00000467263 SLC39A7Q92504 469 aa14.07□□□□□ -0.16
SMC4-207ENST00000467263 C7P10643 843 aa14.05□□□□□ -0.16
SMC4-207ENST00000467263 PCDHB13Q9Y5F0 798 aa14.05□□□□□ -0.16
SMC4-207ENST00000467263 POTEFA5A3E0 1075 aa14.04□□□□□ -0.16
SMC4-207ENST00000467263 FAM212AQ96EL1 285 aa14.04□□□□□ -0.16
SMC4-207ENST00000467263 TIE1P35590 1138 aa14.03□□□□□ -0.16
SMC4-207ENST00000467263 VASPP50552 380 aaPredicted RBP14.03□□□□□ -0.16
SMC4-207ENST00000467263 IFNL1Q8IU54 200 aa14.03□□□□□ -0.16
SMC4-207ENST00000467263 TTLL13PA6NNM8 815 aa14.02□□□□□ -0.17
SMC4-207ENST00000467263 DCAF8Q5TAQ9 597 aa13.98□□□□□ -0.17
SMC4-207ENST00000467263 SGIP1Q9BQI5 828 aa13.97□□□□□ -0.17
SMC4-207ENST00000467263 PYGBP11216 843 aa13.96□□□□□ -0.17
SMC4-207ENST00000467263 COLQQ9Y215 455 aaPredicted RBP13.95□□□□□ -0.18
SMC4-207ENST00000467263 KLHL34Q8N239 644 aa13.93□□□□□ -0.18
SMC4-207ENST00000467263 TRIM35Q9UPQ4 493 aa13.92□□□□□ -0.18
SMC4-207ENST00000467263 PCDHB8Q9UN66 801 aa13.88□□□□□ -0.19
SMC4-207ENST00000467263 TMEM106CQ9BVX2 250 aa13.87□□□□□ -0.19
SMC4-207ENST00000467263 IFNLR1Q8IU57 520 aaPredicted RBP13.86□□□□□ -0.19
SMC4-207ENST00000467263 SEC24BO95487 1268 aa13.81□□□□□ -0.2
SMC4-207ENST00000467263 IER5LQ5T953 404 aa13.78□□□□□ -0.2
SMC4-207ENST00000467263 MAMSTRQ6ZN01 415 aa13.77□□□□□ -0.21
SMC4-207ENST00000467263 GSE1Q14687 1217 aa13.76□□□□□ -0.21
SMC4-207ENST00000467263 SCUBE2Q9NQ36 999 aa13.73□□□□□ -0.21
SMC4-207ENST00000467263 IRX5P78411 483 aaPredicted RBP13.72□□□□□ -0.21
SMC4-207ENST00000467263 LCE2DQ5TA82 110 aaPredicted RBP13.72□□□□□ -0.21
SMC4-207ENST00000467263 SPOCK2Q92563 424 aa13.71□□□□□ -0.21
SMC4-207ENST00000467263 CHRM1P11229 460 aaPredicted RBP13.68□□□□□ -0.22
SMC4-207ENST00000467263 POTEMA6NI47 508 aa13.67□□□□□ -0.22
SMC4-207ENST00000467263 PLCG2P16885 1265 aa13.66□□□□□ -0.22
SMC4-207ENST00000467263 CIZ1Q9ULV3 898 aaPredicted RBP13.66□□□□□ -0.22
SMC4-207ENST00000467263 POTEGQ6S5H5 508 aa13.65□□□□□ -0.22
SMC4-207ENST00000467263 ZNF467Q7Z7K2 595 aaPredicted RBP13.64□□□□□ -0.23
SMC4-207ENST00000467263 FAM163AQ96GL9 167 aaPredicted RBP13.63□□□□□ -0.23
SMC4-207ENST00000467263 PSEN1P49768 467 aa13.6□□□□□ -0.23
SMC4-207ENST00000467263 OCEL1Q9H607 264 aa13.6□□□□□ -0.23
SMC4-207ENST00000467263 PDCD7Q8N8D1 485 aaKnown RBP13.56□□□□□ -0.24
SMC4-207ENST00000467263 SLAIN1Q8ND83 568 aa13.55□□□□□ -0.24
SMC4-207ENST00000467263 PLSCR2Q9NRY7 297 aa13.53□□□□□ -0.24
SMC4-207ENST00000467263 PDAP1Q13442 181 aaKnown RBP13.51□□□□□ -0.25
SMC4-207ENST00000467263 MKRN3Q13064 507 aaKnown RBP13.48□□□□□ -0.25
SMC4-207ENST00000467263 GOLGA2Q08379 1002 aa13.46□□□□□ -0.25
SMC4-207ENST00000467263 CABP2Q9NPB3 220 aa13.46□□□□□ -0.25
SMC4-207ENST00000467263 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.46□□□□□ -0.259e-9■■■■■ 32.2
SMC4-207ENST00000467263 DPY19L2Q6NUT2 758 aa13.45□□□□□ -0.26
SMC4-207ENST00000467263 ILDR1Q86SU0 546 aaPredicted RBP13.42□□□□□ -0.26
SMC4-207ENST00000467263 ST18O60284 1047 aa13.41□□□□□ -0.26
SMC4-207ENST00000467263 RNF25Q96BH1 459 aaPredicted RBP13.4□□□□□ -0.26
SMC4-207ENST00000467263 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.39□□□□□ -0.27
SMC4-207ENST00000467263 EFCAB3Q8N7B9 438 aa13.32□□□□□ -0.28
SMC4-207ENST00000467263 TRIM41Q8WV44 630 aa13.32□□□□□ -0.28
SMC4-207ENST00000467263 L3MBTL3Q96JM7 780 aaPredicted RBP13.32□□□□□ -0.28
SMC4-207ENST00000467263 C3orf67Q6ZVT6 689 aa13.31□□□□□ -0.28
SMC4-207ENST00000467263 PCDH10Q9P2E7 1040 aa13.28□□□□□ -0.28
SMC4-207ENST00000467263 RIOK3O14730 519 aaKnown RBP13.27□□□□□ -0.29
SMC4-207ENST00000467263 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.26□□□□□ -0.29
SMC4-207ENST00000467263 ZFP91Q96JP5 570 aaPredicted RBP13.26□□□□□ -0.29
SMC4-207ENST00000467263 CDAN1Q8IWY9 1227 aa13.25□□□□□ -0.29
SMC4-207ENST00000467263 BOLA1Q9Y3E2 137 aa13.24□□□□□ -0.29
SMC4-207ENST00000467263 MARVELD3Q96A59 401 aa13.23□□□□□ -0.29
SMC4-207ENST00000467263 SNPHO15079 494 aa13.19□□□□□ -0.3
SMC4-207ENST00000467263 VGFO15240 615 aaPredicted RBP13.18□□□□□ -0.3
SMC4-207ENST00000467263 MS4A4AQ96JQ5 239 aa13.18□□□□□ -0.3
SMC4-207ENST00000467263 TMEM121BQ9BXQ6 578 aaPredicted RBP13.16□□□□□ -0.3
SMC4-207ENST00000467263 PHF8Q9UPP1 1060 aa13.16□□□□□ -0.3
SMC4-207ENST00000467263 G3V3G9 751 aa13.12□□□□□ -0.31
SMC4-207ENST00000467263 HOXB3P14651 431 aaPredicted RBP13.12□□□□□ -0.31
SMC4-207ENST00000467263 TMEM92Q6UXU6 159 aa13.12□□□□□ -0.31
SMC4-207ENST00000467263 PKD2Q13563 968 aa13.11□□□□□ -0.31
SMC4-207ENST00000467263 POTEB3A0JP26 581 aa13.1□□□□□ -0.31
SMC4-207ENST00000467263 POTEBQ6S5H4 581 aa13.1□□□□□ -0.31
SMC4-207ENST00000467263 MICALL2Q8IY33 904 aa13.1□□□□□ -0.31
SMC4-207ENST00000467263 BCL11BQ9C0K0 894 aaPredicted RBP13.1□□□□□ -0.31
SMC4-207ENST00000467263 SOX12O15370 315 aa13.09□□□□□ -0.31
SMC4-207ENST00000467263 ECM2O94769 699 aaPredicted RBP13.08□□□□□ -0.32
SMC4-207ENST00000467263 RGL2O15211 777 aa13.06□□□□□ -0.32
SMC4-207ENST00000467263 EMP3P54852 163 aa13.05□□□□□ -0.32
SMC4-207ENST00000467263 STK24Q9Y6E0 443 aa13.05□□□□□ -0.32
SMC4-207ENST00000467263 FBXO22Q8NEZ5 403 aa13.04□□□□□ -0.32
SMC4-207ENST00000467263 FAM205CA6NFA0 338 aa13□□□□□ -0.33
SMC4-207ENST00000467263 MFRPQ9BY79 579 aa13□□□□□ -0.33
SMC4-207ENST00000467263 STK25O00506 426 aa12.99□□□□□ -0.33
SMC4-207ENST00000467263 HS3ST6Q96QI5 342 aa12.99□□□□□ -0.33
SMC4-207ENST00000467263 NLRP6P59044 892 aa12.96□□□□□ -0.33
SMC4-207ENST00000467263 HOXB1P14653 301 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms