RNA–Protein interactions for RNA: ENST00000466845.1

LRCH3-212, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 3

Gene LRCH3, Length 662 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-212ENST00000466845 CCDC61Q9Y6R9 512 aa12.88□□□□□ -0.35
LRCH3-212ENST00000466845 IFNLR1Q8IU57 520 aaPredicted RBP12.86□□□□□ -0.35
LRCH3-212ENST00000466845 SPOCK2Q92563 424 aa12.86□□□□□ -0.35
LRCH3-212ENST00000466845 GSE1Q14687 1217 aa12.84□□□□□ -0.35
LRCH3-212ENST00000466845 DCAF8Q5TAQ9 597 aa12.82□□□□□ -0.36
LRCH3-212ENST00000466845 PHF12Q96QT6 1004 aa12.82□□□□□ -0.36
LRCH3-212ENST00000466845 SGIP1Q9BQI5 828 aa12.81□□□□□ -0.36
LRCH3-212ENST00000466845 KIF12Q96FN5 646 aa12.78□□□□□ -0.36
LRCH3-212ENST00000466845 DCBLD2Q96PD2 775 aa12.76□□□□□ -0.37
LRCH3-212ENST00000466845 GALR2O43603 387 aaPredicted RBP12.73□□□□□ -0.37
LRCH3-212ENST00000466845 CHRM1P11229 460 aaPredicted RBP12.7□□□□□ -0.38
LRCH3-212ENST00000466845 MAP3K13O43283 966 aa12.69□□□□□ -0.38
LRCH3-212ENST00000466845 MS4A3Q96HJ5 214 aa12.69□□□□□ -0.38
LRCH3-212ENST00000466845 TRIM41Q8WV44 630 aa12.68□□□□□ -0.38
LRCH3-212ENST00000466845 PCDHB13Q9Y5F0 798 aa12.66□□□□□ -0.38
LRCH3-212ENST00000466845 CIZ1Q9ULV3 898 aaPredicted RBP12.64□□□□□ -0.39
LRCH3-212ENST00000466845 PYGBP11216 843 aa12.61□□□□□ -0.39
LRCH3-212ENST00000466845 TIE1P35590 1138 aa12.61□□□□□ -0.39
LRCH3-212ENST00000466845 POTEIP0CG38 1075 aa12.6□□□□□ -0.39
LRCH3-212ENST00000466845 ASTLQ6HA08 431 aaPredicted RBP12.59□□□□□ -0.39
LRCH3-212ENST00000466845 ZNF467Q7Z7K2 595 aaPredicted RBP12.59□□□□□ -0.39
LRCH3-212ENST00000466845 ATMINO43313 823 aaPredicted RBP12.55□□□□□ -0.4
LRCH3-212ENST00000466845 IFNL1Q8IU54 200 aa12.55□□□□□ -0.4
LRCH3-212ENST00000466845 SLC39A7Q92504 469 aa12.51□□□□□ -0.41
LRCH3-212ENST00000466845 C7P10643 843 aa12.5□□□□□ -0.41
LRCH3-212ENST00000466845 BMP2KQ9NSY1 1161 aaPredicted RBP12.5□□□□□ -0.41
LRCH3-212ENST00000466845 TTLL13PA6NNM8 815 aa12.47□□□□□ -0.41
LRCH3-212ENST00000466845 ATN1P54259 1190 aaPredicted RBP12.45□□□□□ -0.42
LRCH3-212ENST00000466845 TMEM106CQ9BVX2 250 aa12.45□□□□□ -0.42
LRCH3-212ENST00000466845 PCDHB8Q9UN66 801 aa12.45□□□□□ -0.42
LRCH3-212ENST00000466845 TRPC6Q9Y210 931 aa12.45□□□□□ -0.42
LRCH3-212ENST00000466845 IER5LQ5T953 404 aa12.43□□□□□ -0.42
LRCH3-212ENST00000466845 PDAP1Q13442 181 aaKnown RBP12.42□□□□□ -0.42
LRCH3-212ENST00000466845 PELP1Q8IZL8 1130 aaKnown RBP12.42□□□□□ -0.42
LRCH3-212ENST00000466845 TAOK2Q9UL54 1235 aa12.42□□□□□ -0.42
LRCH3-212ENST00000466845 LHX8Q68G74 356 aa12.4□□□□□ -0.42
LRCH3-212ENST00000466845 METRNQ9UJH8 293 aa12.39□□□□□ -0.43
LRCH3-212ENST00000466845 TRIM35Q9UPQ4 493 aa12.39□□□□□ -0.43
LRCH3-212ENST00000466845 PSEN1P49768 467 aa12.38□□□□□ -0.43
LRCH3-212ENST00000466845 RIOK3O14730 519 aaKnown RBP12.35□□□□□ -0.43
LRCH3-212ENST00000466845 ECM2O94769 699 aaPredicted RBP12.34□□□□□ -0.43
LRCH3-212ENST00000466845 GOLGA2Q08379 1002 aa12.33□□□□□ -0.44
LRCH3-212ENST00000466845 VGFO15240 615 aaPredicted RBP12.32□□□□□ -0.44
LRCH3-212ENST00000466845 SEC24BO95487 1268 aa12.31□□□□□ -0.44
LRCH3-212ENST00000466845 PKD2Q13563 968 aa12.31□□□□□ -0.44
LRCH3-212ENST00000466845 MKRN3Q13064 507 aaKnown RBP12.29□□□□□ -0.44
LRCH3-212ENST00000466845 MAMSTRQ6ZN01 415 aa12.27□□□□□ -0.45
LRCH3-212ENST00000466845 PLCG2P16885 1265 aa12.25□□□□□ -0.45
LRCH3-212ENST00000466845 OCEL1Q9H607 264 aa12.25□□□□□ -0.45
LRCH3-212ENST00000466845 RNF25Q96BH1 459 aaPredicted RBP12.24□□□□□ -0.45
LRCH3-212ENST00000466845 IRX5P78411 483 aaPredicted RBP12.22□□□□□ -0.45
LRCH3-212ENST00000466845 POTEFA5A3E0 1075 aa12.2□□□□□ -0.46
LRCH3-212ENST00000466845 CABP2Q9NPB3 220 aa12.19□□□□□ -0.46
LRCH3-212ENST00000466845 COLQQ9Y215 455 aaPredicted RBP12.19□□□□□ -0.46
LRCH3-212ENST00000466845 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.18□□□□□ -0.46
LRCH3-212ENST00000466845 POTEB2H3BUK9 544 aa12.18□□□□□ -0.46
LRCH3-212ENST00000466845 ZFP91Q96JP5 570 aaPredicted RBP12.18□□□□□ -0.46
LRCH3-212ENST00000466845 SCUBE2Q9NQ36 999 aa12.16□□□□□ -0.46
LRCH3-212ENST00000466845 RGL2O15211 777 aa12.15□□□□□ -0.46
LRCH3-212ENST00000466845 SOX12O15370 315 aa12.15□□□□□ -0.46
LRCH3-212ENST00000466845 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.15□□□□□ -0.46
LRCH3-212ENST00000466845 ILDR1Q86SU0 546 aaPredicted RBP12.14□□□□□ -0.47
LRCH3-212ENST00000466845 L3MBTL3Q96JM7 780 aaPredicted RBP12.13□□□□□ -0.47
LRCH3-212ENST00000466845 OTUD5Q96G74 571 aa12.11□□□□□ -0.47
LRCH3-212ENST00000466845 STK25O00506 426 aa12.09□□□□□ -0.47
LRCH3-212ENST00000466845 EFCAB3Q8N7B9 438 aa12.09□□□□□ -0.47
LRCH3-212ENST00000466845 BCL11BQ9C0K0 894 aaPredicted RBP12.09□□□□□ -0.47
LRCH3-212ENST00000466845 PDCD7Q8N8D1 485 aaKnown RBP12.08□□□□□ -0.48
LRCH3-212ENST00000466845 STK24Q9Y6E0 443 aa12.08□□□□□ -0.48
LRCH3-212ENST00000466845 POTEJP0CG39 1038 aa12.07□□□□□ -0.48
LRCH3-212ENST00000466845 AMER1Q5JTC6 1135 aaPredicted RBP12.05□□□□□ -0.48
LRCH3-212ENST00000466845 G3V3G9 751 aa12.03□□□□□ -0.48
LRCH3-212ENST00000466845 NLRP6P59044 892 aa12.02□□□□□ -0.49
LRCH3-212ENST00000466845 HS6ST3Q8IZP7 471 aa12□□□□□ -0.49
LRCH3-212ENST00000466845 EIF2AK3Q9NZJ5 1116 aaKnown RBP12□□□□□ -0.49
LRCH3-212ENST00000466845 BOLA1Q9Y3E2 137 aa11.97□□□□□ -0.49
LRCH3-212ENST00000466845 C3orf67Q6ZVT6 689 aa11.96□□□□□ -0.49
LRCH3-212ENST00000466845 DNAJC5Q9H3Z4 198 aa11.96□□□□□ -0.49
LRCH3-212ENST00000466845 PHF8Q9UPP1 1060 aa11.94□□□□□ -0.5
LRCH3-212ENST00000466845 CHGAP10645 457 aaKnown RBP11.93□□□□□ -0.5
LRCH3-212ENST00000466845 DPY19L2Q6NUT2 758 aa11.93□□□□□ -0.5
LRCH3-212ENST00000466845 SLAIN1Q8ND83 568 aa11.92□□□□□ -0.5
LRCH3-212ENST00000466845 TMEM121BQ9BXQ6 578 aaPredicted RBP11.92□□□□□ -0.5
LRCH3-212ENST00000466845 RYDENQ9NUL5 291 aaKnown RBP11.92□□□□□ -0.5
LRCH3-212ENST00000466845 FBXO22Q8NEZ5 403 aa11.91□□□□□ -0.5
LRCH3-212ENST00000466845 MFRPQ9BY79 579 aa11.9□□□□□ -0.5
LRCH3-212ENST00000466845 SNPHO15079 494 aa11.88□□□□□ -0.51
LRCH3-212ENST00000466845 MS4A4AQ96JQ5 239 aa11.88□□□□□ -0.51
LRCH3-212ENST00000466845 MICALL2Q8IY33 904 aa11.84□□□□□ -0.51
LRCH3-212ENST00000466845 DCAF8L2P0C7V8 631 aa11.83□□□□□ -0.52
LRCH3-212ENST00000466845 RTN4Q9NQC3 1192 aaKnown RBP11.81□□□□□ -0.52
LRCH3-212ENST00000466845 FAM163AQ96GL9 167 aaPredicted RBP11.75□□□□□ -0.53
LRCH3-212ENST00000466845 NKX1-1Q15270 411 aaPredicted RBP11.71□□□□□ -0.53
LRCH3-212ENST00000466845 BBXQ8WY36 941 aaPredicted RBP11.69□□□□□ -0.54
LRCH3-212ENST00000466845 PPP1R37O75864 691 aa11.67□□□□□ -0.54
LRCH3-212ENST00000466845 DOK7Q18PE1 504 aa11.67□□□□□ -0.54
LRCH3-212ENST00000466845 RIMBP2O15034 1052 aa11.65□□□□□ -0.54
LRCH3-212ENST00000466845 GTPBP6O43824 516 aaPredicted RBP11.65□□□□□ -0.54
LRCH3-212ENST00000466845 ST18O60284 1047 aa11.64□□□□□ -0.55
LRCH3-212ENST00000466845 TMEM92Q6UXU6 159 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms