RNA–Protein interactions for RNA: ENST00000453007.1

SCN3A-205, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 1,216 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-205ENST00000453007 FAM212AQ96EL1 285 aa14.82□□□□□ -0.04
SCN3A-205ENST00000453007 CCDC61Q9Y6R9 512 aa14.82□□□□□ -0.04
SCN3A-205ENST00000453007 IFNLR1Q8IU57 520 aaPredicted RBP14.79□□□□□ -0.04
SCN3A-205ENST00000453007 GALR2O43603 387 aaPredicted RBP14.78□□□□□ -0.04
SCN3A-205ENST00000453007 DCAF8Q5TAQ9 597 aa14.77□□□□□ -0.05
SCN3A-205ENST00000453007 DCBLD2Q96PD2 775 aa14.75□□□□□ -0.05
SCN3A-205ENST00000453007 SPOCK2Q92563 424 aa14.72□□□□□ -0.05
SCN3A-205ENST00000453007 MS4A3Q96HJ5 214 aa14.71□□□□□ -0.05
SCN3A-205ENST00000453007 KIF12Q96FN5 646 aa14.7□□□□□ -0.06
SCN3A-205ENST00000453007 MAP3K13O43283 966 aa14.67□□□□□ -0.06
SCN3A-205ENST00000453007 GSE1Q14687 1217 aa14.65□□□□□ -0.06
SCN3A-205ENST00000453007 POTEIP0CG38 1075 aa14.63□□□□□ -0.07
SCN3A-205ENST00000453007 PYGBP11216 843 aa14.61□□□□□ -0.07
SCN3A-205ENST00000453007 CIZ1Q9ULV3 898 aaPredicted RBP14.61□□□□□ -0.07
SCN3A-205ENST00000453007 PCDHB13Q9Y5F0 798 aa14.61□□□□□ -0.07
SCN3A-205ENST00000453007 SGIP1Q9BQI5 828 aa14.55□□□□□ -0.08
SCN3A-205ENST00000453007 IFNL1Q8IU54 200 aa14.51□□□□□ -0.09
SCN3A-205ENST00000453007 TRPC6Q9Y210 931 aa14.5□□□□□ -0.09
SCN3A-205ENST00000453007 ATMINO43313 823 aaPredicted RBP14.47□□□□□ -0.09
SCN3A-205ENST00000453007 ASTLQ6HA08 431 aaPredicted RBP14.47□□□□□ -0.09
SCN3A-205ENST00000453007 TIE1P35590 1138 aa14.46□□□□□ -0.09
SCN3A-205ENST00000453007 BMP2KQ9NSY1 1161 aaPredicted RBP14.45□□□□□ -0.1
SCN3A-205ENST00000453007 PCDHB8Q9UN66 801 aa14.44□□□□□ -0.1
SCN3A-205ENST00000453007 CHRM1P11229 460 aaPredicted RBP14.42□□□□□ -0.1
SCN3A-205ENST00000453007 ATN1P54259 1190 aaPredicted RBP14.42□□□□□ -0.1
SCN3A-205ENST00000453007 PELP1Q8IZL8 1130 aaKnown RBP14.42□□□□□ -0.1
SCN3A-205ENST00000453007 ZNF467Q7Z7K2 595 aaPredicted RBP14.4□□□□□ -0.1
SCN3A-205ENST00000453007 TTLL13PA6NNM8 815 aa14.39□□□□□ -0.11
SCN3A-205ENST00000453007 TMEM106CQ9BVX2 250 aa14.37□□□□□ -0.11
SCN3A-205ENST00000453007 TRIM41Q8WV44 630 aa14.36□□□□□ -0.11
SCN3A-205ENST00000453007 SLC39A7Q92504 469 aa14.36□□□□□ -0.11
SCN3A-205ENST00000453007 RTN4Q9NQC3 1192 aaKnown RBP14.36□□□□□ -0.11
SCN3A-205ENST00000453007 LHX8Q68G74 356 aa14.35□□□□□ -0.11
SCN3A-205ENST00000453007 METRNQ9UJH8 293 aa14.34□□□□□ -0.11
SCN3A-205ENST00000453007 C7P10643 843 aa14.32□□□□□ -0.12
SCN3A-205ENST00000453007 TRIM35Q9UPQ4 493 aa14.32□□□□□ -0.12
SCN3A-205ENST00000453007 AMER1Q5JTC6 1135 aaPredicted RBP14.29□□□□□ -0.12
SCN3A-205ENST00000453007 PSEN1P49768 467 aa14.25□□□□□ -0.13
SCN3A-205ENST00000453007 PDAP1Q13442 181 aaKnown RBP14.24□□□□□ -0.13
SCN3A-205ENST00000453007 SEC24BO95487 1268 aa14.23□□□□□ -0.13
SCN3A-205ENST00000453007 GOLGA2Q08379 1002 aa14.21□□□□□ -0.13
SCN3A-205ENST00000453007 IER5LQ5T953 404 aa14.2□□□□□ -0.14
SCN3A-205ENST00000453007 SLC24A1O60721 1099 aa14.19□□□□□ -0.14
SCN3A-205ENST00000453007 ECM2O94769 699 aaPredicted RBP14.19□□□□□ -0.14
SCN3A-205ENST00000453007 POTEB2H3BUK9 544 aa14.16□□□□□ -0.14
SCN3A-205ENST00000453007 RIOK3O14730 519 aaKnown RBP14.16□□□□□ -0.14
SCN3A-205ENST00000453007 PKD2Q13563 968 aa14.14□□□□□ -0.15
SCN3A-205ENST00000453007 RNF25Q96BH1 459 aaPredicted RBP14.14□□□□□ -0.15
SCN3A-205ENST00000453007 COLQQ9Y215 455 aaPredicted RBP14.14□□□□□ -0.15
SCN3A-205ENST00000453007 POTEFA5A3E0 1075 aa14.13□□□□□ -0.15
SCN3A-205ENST00000453007 MKRN3Q13064 507 aaKnown RBP14.13□□□□□ -0.15
SCN3A-205ENST00000453007 PLCG2P16885 1265 aa14.12□□□□□ -0.15
SCN3A-205ENST00000453007 CABP2Q9NPB3 220 aa14.11□□□□□ -0.15
SCN3A-205ENST00000453007 VGFO15240 615 aaPredicted RBP14.09□□□□□ -0.15
SCN3A-205ENST00000453007 TAOK2Q9UL54 1235 aa14.07□□□□□ -0.16
SCN3A-205ENST00000453007 IRX5P78411 483 aaPredicted RBP14.06□□□□□ -0.16
SCN3A-205ENST00000453007 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.05□□□□□ -0.16
SCN3A-205ENST00000453007 ZFP91Q96JP5 570 aaPredicted RBP14.05□□□□□ -0.16
SCN3A-205ENST00000453007 OCEL1Q9H607 264 aa14.05□□□□□ -0.16
SCN3A-205ENST00000453007 MAMSTRQ6ZN01 415 aa14.03□□□□□ -0.16
SCN3A-205ENST00000453007 OTUD5Q96G74 571 aa14.03□□□□□ -0.16
SCN3A-205ENST00000453007 RGL2O15211 777 aa14.02□□□□□ -0.17
SCN3A-205ENST00000453007 POTEJP0CG39 1038 aa14.02□□□□□ -0.17
SCN3A-205ENST00000453007 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.02□□□□□ -0.17
SCN3A-205ENST00000453007 SCUBE2Q9NQ36 999 aa14.01□□□□□ -0.17
SCN3A-205ENST00000453007 EFCAB3Q8N7B9 438 aa13.97□□□□□ -0.17
SCN3A-205ENST00000453007 STK25O00506 426 aa13.94□□□□□ -0.18
SCN3A-205ENST00000453007 BCL11BQ9C0K0 894 aaPredicted RBP13.94□□□□□ -0.18
SCN3A-205ENST00000453007 STK24Q9Y6E0 443 aa13.94□□□□□ -0.18
SCN3A-205ENST00000453007 PDCD7Q8N8D1 485 aaKnown RBP13.93□□□□□ -0.18
SCN3A-205ENST00000453007 L3MBTL3Q96JM7 780 aaPredicted RBP13.87□□□□□ -0.19
SCN3A-205ENST00000453007 G3V3G9 751 aa13.85□□□□□ -0.19
SCN3A-205ENST00000453007 SOX12O15370 315 aa13.85□□□□□ -0.19
SCN3A-205ENST00000453007 DPY19L2Q6NUT2 758 aa13.85□□□□□ -0.19
SCN3A-205ENST00000453007 ILDR1Q86SU0 546 aaPredicted RBP13.85□□□□□ -0.19
SCN3A-205ENST00000453007 C3orf67Q6ZVT6 689 aa13.81□□□□□ -0.2
SCN3A-205ENST00000453007 SLAIN1Q8ND83 568 aa13.81□□□□□ -0.2
SCN3A-205ENST00000453007 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.81□□□□□ -0.2
SCN3A-205ENST00000453007 PHF8Q9UPP1 1060 aa13.81□□□□□ -0.2
SCN3A-205ENST00000453007 BOLA1Q9Y3E2 137 aa13.77□□□□□ -0.21
SCN3A-205ENST00000453007 DCAF8L2P0C7V8 631 aa13.76□□□□□ -0.21
SCN3A-205ENST00000453007 NLRP6P59044 892 aa13.76□□□□□ -0.21
SCN3A-205ENST00000453007 CHGAP10645 457 aaKnown RBP13.75□□□□□ -0.21
SCN3A-205ENST00000453007 HS6ST3Q8IZP7 471 aa13.72□□□□□ -0.21
SCN3A-205ENST00000453007 MS4A4AQ96JQ5 239 aa13.72□□□□□ -0.21
SCN3A-205ENST00000453007 MFRPQ9BY79 579 aa13.71□□□□□ -0.21
SCN3A-205ENST00000453007 FBXO22Q8NEZ5 403 aa13.68□□□□□ -0.22
SCN3A-205ENST00000453007 FAM163AQ96GL9 167 aaPredicted RBP13.66□□□□□ -0.22
SCN3A-205ENST00000453007 MICALL2Q8IY33 904 aa13.64□□□□□ -0.23
SCN3A-205ENST00000453007 TMEM121BQ9BXQ6 578 aaPredicted RBP13.62□□□□□ -0.23
SCN3A-205ENST00000453007 SNPHO15079 494 aa13.57□□□□□ -0.24
SCN3A-205ENST00000453007 PPP1R37O75864 691 aa13.5□□□□□ -0.25
SCN3A-205ENST00000453007 NKX1-1Q15270 411 aaPredicted RBP13.5□□□□□ -0.25
SCN3A-205ENST00000453007 DNAJC5Q9H3Z4 198 aa13.5□□□□□ -0.25
SCN3A-205ENST00000453007 POTEMA6NI47 508 aa13.49□□□□□ -0.25
SCN3A-205ENST00000453007 LCE2DQ5TA82 110 aaPredicted RBP13.49□□□□□ -0.25
SCN3A-205ENST00000453007 ST18O60284 1047 aa13.48□□□□□ -0.25
SCN3A-205ENST00000453007 POTEGQ6S5H5 508 aa13.48□□□□□ -0.25
SCN3A-205ENST00000453007 TMEM92Q6UXU6 159 aa13.48□□□□□ -0.25
SCN3A-205ENST00000453007 RYDENQ9NUL5 291 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms