RNA–Protein interactions for RNA: ENST00000444896.1

HMGB3P6-201, Transcript of high mobility group box 3 pseudogene 6, humanhuman

BASIC

Gene HMGB3P6, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P6-201ENST00000444896 PAK3O75914 559 aaPredicted RBP11.92□□□□□ -0.5
HMGB3P6-201ENST00000444896 HAX1O00165 279 aa11.91□□□□□ -0.5
HMGB3P6-201ENST00000444896 DCAF8L2P0C7V8 631 aa11.91□□□□□ -0.5
HMGB3P6-201ENST00000444896 RNF25Q96BH1 459 aaPredicted RBP11.89□□□□□ -0.51
HMGB3P6-201ENST00000444896 TSPYL2Q9H2G4 693 aaPredicted RBP11.89□□□□□ -0.51
HMGB3P6-201ENST00000444896 CHRM1P11229 460 aaPredicted RBP11.88□□□□□ -0.51
HMGB3P6-201ENST00000444896 PYGBP11216 843 aa11.85□□□□□ -0.51
HMGB3P6-201ENST00000444896 CD44P16070 742 aaKnown RBP11.84□□□□□ -0.51
HMGB3P6-201ENST00000444896 CCDC61Q9Y6R9 512 aa11.82□□□□□ -0.52
HMGB3P6-201ENST00000444896 RIOK3O14730 519 aaKnown RBP11.78□□□□□ -0.52
HMGB3P6-201ENST00000444896 ZRANB1Q9UGI0 708 aa11.78□□□□□ -0.52
HMGB3P6-201ENST00000444896 C19orf67A6NJJ6 358 aa11.75□□□□□ -0.53
HMGB3P6-201ENST00000444896 CHGAP10645 457 aaKnown RBP11.73□□□□□ -0.53
HMGB3P6-201ENST00000444896 BBXQ8WY36 941 aaPredicted RBP11.72□□□□□ -0.53
HMGB3P6-201ENST00000444896 SLC24A1O60721 1099 aa11.71□□□□□ -0.53
HMGB3P6-201ENST00000444896 VGFO15240 615 aaPredicted RBP11.7□□□□□ -0.54
HMGB3P6-201ENST00000444896 PLCB2Q00722 1185 aa11.69□□□□□ -0.54
HMGB3P6-201ENST00000444896 HS6ST3Q8IZP7 471 aa11.69□□□□□ -0.54
HMGB3P6-201ENST00000444896 KIF12Q96FN5 646 aa11.69□□□□□ -0.54
HMGB3P6-201ENST00000444896 SGIP1Q9BQI5 828 aa11.69□□□□□ -0.54
HMGB3P6-201ENST00000444896 PCDHB8Q9UN66 801 aa11.67□□□□□ -0.54
HMGB3P6-201ENST00000444896 PCDHB13Q9Y5F0 798 aa11.67□□□□□ -0.54
HMGB3P6-201ENST00000444896 MAP3K13O43283 966 aa11.66□□□□□ -0.54
HMGB3P6-201ENST00000444896 TAOK2Q9UL54 1235 aa11.66□□□□□ -0.54
HMGB3P6-201ENST00000444896 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.65□□□□□ -0.54
HMGB3P6-201ENST00000444896 ZNF467Q7Z7K2 595 aaPredicted RBP11.65□□□□□ -0.54
HMGB3P6-201ENST00000444896 ZFP91Q96JP5 570 aaPredicted RBP11.65□□□□□ -0.54
HMGB3P6-201ENST00000444896 PHF12Q96QT6 1004 aa11.65□□□□□ -0.54
HMGB3P6-201ENST00000444896 ZNF579Q8NAF0 562 aaKnown RBP11.64□□□□□ -0.55
HMGB3P6-201ENST00000444896 DNAJC5Q9H3Z4 198 aa11.64□□□□□ -0.55
HMGB3P6-201ENST00000444896 IFNL1Q8IU54 200 aa11.62□□□□□ -0.55
HMGB3P6-201ENST00000444896 STK25O00506 426 aa11.61□□□□□ -0.55
HMGB3P6-201ENST00000444896 EVX2Q03828 476 aa11.61□□□□□ -0.55
HMGB3P6-201ENST00000444896 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.61□□□□□ -0.55
HMGB3P6-201ENST00000444896 BCL11BQ9C0K0 894 aaPredicted RBP11.59□□□□□ -0.55
HMGB3P6-201ENST00000444896 NKX1-1Q15270 411 aaPredicted RBP11.58□□□□□ -0.56
HMGB3P6-201ENST00000444896 PDAP1Q13442 181 aaKnown RBP11.57□□□□□ -0.56
HMGB3P6-201ENST00000444896 PAXIP1Q6ZW49 1069 aaPredicted RBP11.57□□□□□ -0.56
HMGB3P6-201ENST00000444896 STK24Q9Y6E0 443 aa11.57□□□□□ -0.56
HMGB3P6-201ENST00000444896 PSEN1P49768 467 aa11.56□□□□□ -0.56
HMGB3P6-201ENST00000444896 CLCN6P51797 869 aa11.55□□□□□ -0.56
HMGB3P6-201ENST00000444896 SP7Q8TDD2 431 aaPredicted RBP11.55□□□□□ -0.56
HMGB3P6-201ENST00000444896 CFAP44Q96MT7 982 aa11.54□□□□□ -0.56
HMGB3P6-201ENST00000444896 SPRYD3Q8NCJ5 442 aa11.53□□□□□ -0.56
HMGB3P6-201ENST00000444896 MS4A3Q96HJ5 214 aa11.52□□□□□ -0.57
HMGB3P6-201ENST00000444896 TRPC6Q9Y210 931 aa11.5□□□□□ -0.57
HMGB3P6-201ENST00000444896 HAP1P54257 671 aaPredicted RBP11.49□□□□□ -0.57
HMGB3P6-201ENST00000444896 GTPBP6O43824 516 aaPredicted RBP11.48□□□□□ -0.57
HMGB3P6-201ENST00000444896 GABBR2O75899 941 aa11.47□□□□□ -0.57
HMGB3P6-201ENST00000444896 GALR2O43603 387 aaPredicted RBP11.44□□□□□ -0.58
HMGB3P6-201ENST00000444896 DCBLD2Q96PD2 775 aa11.43□□□□□ -0.58
HMGB3P6-201ENST00000444896 CABP2Q9NPB3 220 aa11.4□□□□□ -0.58
HMGB3P6-201ENST00000444896 TSHZ2Q9NRE2 1034 aa11.4□□□□□ -0.58
HMGB3P6-201ENST00000444896 EFCAB3Q8N7B9 438 aa11.39□□□□□ -0.59
HMGB3P6-201ENST00000444896 TMEM106CQ9BVX2 250 aa11.39□□□□□ -0.59
HMGB3P6-201ENST00000444896 MFRPQ9BY79 579 aa11.38□□□□□ -0.59
HMGB3P6-201ENST00000444896 TIE1P35590 1138 aa11.37□□□□□ -0.59
HMGB3P6-201ENST00000444896 BMP2KQ9NSY1 1161 aaPredicted RBP11.36□□□□□ -0.59
HMGB3P6-201ENST00000444896 TTLL13PA6NNM8 815 aa11.35□□□□□ -0.59
HMGB3P6-201ENST00000444896 GOLGA2Q08379 1002 aa11.34□□□□□ -0.59
HMGB3P6-201ENST00000444896 VSIG10Q8N0Z9 540 aa11.34□□□□□ -0.59
HMGB3P6-201ENST00000444896 SOX12O15370 315 aa11.33□□□□□ -0.6
HMGB3P6-201ENST00000444896 KDM2AQ9Y2K7 1162 aa11.33□□□□□ -0.6
HMGB3P6-201ENST00000444896 FBXO22Q8NEZ5 403 aa11.32□□□□□ -0.6
HMGB3P6-201ENST00000444896 RYDENQ9NUL5 291 aaKnown RBP11.32□□□□□ -0.6
HMGB3P6-201ENST00000444896 PHF8Q9UPP1 1060 aa11.31□□□□□ -0.6
HMGB3P6-201ENST00000444896 NLRP6P59044 892 aa11.28□□□□□ -0.6
HMGB3P6-201ENST00000444896 PPP1R37O75864 691 aa11.27□□□□□ -0.61
HMGB3P6-201ENST00000444896 ATN1P54259 1190 aaPredicted RBP11.27□□□□□ -0.61
HMGB3P6-201ENST00000444896 ATMINO43313 823 aaPredicted RBP11.26□□□□□ -0.61
HMGB3P6-201ENST00000444896 MS4A4AQ96JQ5 239 aa11.26□□□□□ -0.61
HMGB3P6-201ENST00000444896 TRIM35Q9UPQ4 493 aa11.26□□□□□ -0.61
HMGB3P6-201ENST00000444896 ASTLQ6HA08 431 aaPredicted RBP11.25□□□□□ -0.61
HMGB3P6-201ENST00000444896 MKRN3Q13064 507 aaKnown RBP11.24□□□□□ -0.61
HMGB3P6-201ENST00000444896 ILDR1Q86SU0 546 aaPredicted RBP11.23□□□□□ -0.61
HMGB3P6-201ENST00000444896 CADPS2Q86UW7 1296 aa11.19□□□□□ -0.62
HMGB3P6-201ENST00000444896 PELP1Q8IZL8 1130 aaKnown RBP11.18□□□□□ -0.62
HMGB3P6-201ENST00000444896 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.17□□□□□ -0.62
HMGB3P6-201ENST00000444896 SEC24BO95487 1268 aa11.15□□□□□ -0.62
HMGB3P6-201ENST00000444896 POTEIP0CG38 1075 aa11.15□□□□□ -0.62
HMGB3P6-201ENST00000444896 SLC39A7Q92504 469 aa11.15□□□□□ -0.62
HMGB3P6-201ENST00000444896 IRX5P78411 483 aaPredicted RBP11.14□□□□□ -0.63
HMGB3P6-201ENST00000444896 DPY19L2Q6NUT2 758 aa11.13□□□□□ -0.63
HMGB3P6-201ENST00000444896 IER5LQ5T953 404 aa11.12□□□□□ -0.63
HMGB3P6-201ENST00000444896 PDCD7Q8N8D1 485 aaKnown RBP11.12□□□□□ -0.63
HMGB3P6-201ENST00000444896 C7P10643 843 aa11.11□□□□□ -0.63
HMGB3P6-201ENST00000444896 PLCG2P16885 1265 aa11.1□□□□□ -0.63
HMGB3P6-201ENST00000444896 METRNQ9UJH8 293 aa11.1□□□□□ -0.63
HMGB3P6-201ENST00000444896 OCEL1Q9H607 264 aa11.08□□□□□ -0.64
HMGB3P6-201ENST00000444896 POTEFA5A3E0 1075 aa11.05□□□□□ -0.64
HMGB3P6-201ENST00000444896 G3V3G9 751 aa11.05□□□□□ -0.64
HMGB3P6-201ENST00000444896 COLQQ9Y215 455 aaPredicted RBP11.05□□□□□ -0.64
HMGB3P6-201ENST00000444896 NCKAP5LQ9HCH0 1330 aa11.03□□□□□ -0.64
HMGB3P6-201ENST00000444896 MICALL2Q8IY33 904 aa11□□□□□ -0.65
HMGB3P6-201ENST00000444896 TMEM121BQ9BXQ6 578 aaPredicted RBP11□□□□□ -0.65
HMGB3P6-201ENST00000444896 CRISPLD2Q9H0B8 497 aa10.99□□□□□ -0.65
HMGB3P6-201ENST00000444896 BOLA1Q9Y3E2 137 aa10.98□□□□□ -0.65
HMGB3P6-201ENST00000444896 PDE4AP27815 886 aa10.96□□□□□ -0.65
HMGB3P6-201ENST00000444896 WDR70Q9NW82 654 aa10.96□□□□□ -0.65
HMGB3P6-201ENST00000444896 MFSD10Q14728 455 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms