RNA–Protein interactions for RNA: ENST00000440127.1

HMGB3P11-201, Transcript of high mobility group box 3 pseudogene 11, humanhuman

BASIC

Gene HMGB3P11, Length 604 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P11-201ENST00000440127 GALR2O43603 387 aaPredicted RBP9.36□□□□□ -0.91
HMGB3P11-201ENST00000440127 TSPYL2Q9H2G4 693 aaPredicted RBP9.36□□□□□ -0.91
HMGB3P11-201ENST00000440127 PHF12Q96QT6 1004 aa9.33□□□□□ -0.92
HMGB3P11-201ENST00000440127 NUBP1P53384 320 aa9.3□□□□□ -0.92
HMGB3P11-201ENST00000440127 RASEFQ8IZ41 740 aa9.3□□□□□ -0.92
HMGB3P11-201ENST00000440127 GSE1Q14687 1217 aa9.29□□□□□ -0.92
HMGB3P11-201ENST00000440127 CCDC61Q9Y6R9 512 aa9.29□□□□□ -0.92
HMGB3P11-201ENST00000440127 SPOCK2Q92563 424 aa9.28□□□□□ -0.92
HMGB3P11-201ENST00000440127 DCAF8Q5TAQ9 597 aa9.26□□□□□ -0.93
HMGB3P11-201ENST00000440127 PLSCR2Q9NRY7 297 aa9.26□□□□□ -0.93
HMGB3P11-201ENST00000440127 SGIP1Q9BQI5 828 aa9.25□□□□□ -0.93
HMGB3P11-201ENST00000440127 KIF12Q96FN5 646 aa9.22□□□□□ -0.93
HMGB3P11-201ENST00000440127 IFNLR1Q8IU57 520 aaPredicted RBP9.21□□□□□ -0.94
HMGB3P11-201ENST00000440127 OTUD5Q96G74 571 aa9.21□□□□□ -0.94
HMGB3P11-201ENST00000440127 POTEB2H3BUK9 544 aa9.2□□□□□ -0.94
HMGB3P11-201ENST00000440127 PELP1Q8IZL8 1130 aaKnown RBP9.2□□□□□ -0.94
HMGB3P11-201ENST00000440127 MS4A3Q96HJ5 214 aa9.2□□□□□ -0.94
HMGB3P11-201ENST00000440127 TRIM41Q8WV44 630 aa9.18□□□□□ -0.94
HMGB3P11-201ENST00000440127 PCDHB13Q9Y5F0 798 aa9.18□□□□□ -0.94
HMGB3P11-201ENST00000440127 MAP3K13O43283 966 aa9.16□□□□□ -0.94
HMGB3P11-201ENST00000440127 CIZ1Q9ULV3 898 aaPredicted RBP9.15□□□□□ -0.94
HMGB3P11-201ENST00000440127 TIE1P35590 1138 aa9.14□□□□□ -0.95
HMGB3P11-201ENST00000440127 ZNF467Q7Z7K2 595 aaPredicted RBP9.13□□□□□ -0.95
HMGB3P11-201ENST00000440127 METRNQ9UJH8 293 aa9.13□□□□□ -0.95
HMGB3P11-201ENST00000440127 ATMINO43313 823 aaPredicted RBP9.12□□□□□ -0.95
HMGB3P11-201ENST00000440127 PYGBP11216 843 aa9.11□□□□□ -0.95
HMGB3P11-201ENST00000440127 CHRM1P11229 460 aaPredicted RBP9.11□□□□□ -0.95
HMGB3P11-201ENST00000440127 ASTLQ6HA08 431 aaPredicted RBP9.11□□□□□ -0.95
HMGB3P11-201ENST00000440127 SLC39A7Q92504 469 aa9.11□□□□□ -0.95
HMGB3P11-201ENST00000440127 C7P10643 843 aa9.1□□□□□ -0.95
HMGB3P11-201ENST00000440127 POTEMA6NI47 508 aa9.08□□□□□ -0.96
HMGB3P11-201ENST00000440127 IFNL1Q8IU54 200 aa9.07□□□□□ -0.96
HMGB3P11-201ENST00000440127 POTEGQ6S5H5 508 aa9.06□□□□□ -0.96
HMGB3P11-201ENST00000440127 ATN1P54259 1190 aaPredicted RBP9.05□□□□□ -0.96
HMGB3P11-201ENST00000440127 BMP2KQ9NSY1 1161 aaPredicted RBP9.05□□□□□ -0.96
HMGB3P11-201ENST00000440127 MAMSTRQ6ZN01 415 aa9.04□□□□□ -0.96
HMGB3P11-201ENST00000440127 TTLL13PA6NNM8 815 aa9.03□□□□□ -0.96
HMGB3P11-201ENST00000440127 POTEJP0CG39 1038 aa9.03□□□□□ -0.96
HMGB3P11-201ENST00000440127 TMEM106CQ9BVX2 250 aa9.03□□□□□ -0.96
HMGB3P11-201ENST00000440127 TAOK2Q9UL54 1235 aa9.03□□□□□ -0.96
HMGB3P11-201ENST00000440127 IER5LQ5T953 404 aa9.02□□□□□ -0.97
HMGB3P11-201ENST00000440127 GOLGA2Q08379 1002 aa9.01□□□□□ -0.97
HMGB3P11-201ENST00000440127 SCUBE2Q9NQ36 999 aa9□□□□□ -0.97
HMGB3P11-201ENST00000440127 PDAP1Q13442 181 aaKnown RBP8.99□□□□□ -0.97
HMGB3P11-201ENST00000440127 FAM163AQ96GL9 167 aaPredicted RBP8.99□□□□□ -0.97
HMGB3P11-201ENST00000440127 PCDHB8Q9UN66 801 aa8.99□□□□□ -0.97
HMGB3P11-201ENST00000440127 TRIM35Q9UPQ4 493 aa8.99□□□□□ -0.97
HMGB3P11-201ENST00000440127 TRPC6Q9Y210 931 aa8.99□□□□□ -0.97
HMGB3P11-201ENST00000440127 SEC24BO95487 1268 aa8.98□□□□□ -0.97
HMGB3P11-201ENST00000440127 PSEN1P49768 467 aa8.95□□□□□ -0.98
HMGB3P11-201ENST00000440127 RIOK3O14730 519 aaKnown RBP8.93□□□□□ -0.98
HMGB3P11-201ENST00000440127 MKRN3Q13064 507 aaKnown RBP8.93□□□□□ -0.98
HMGB3P11-201ENST00000440127 POTEFA5A3E0 1075 aa8.92□□□□□ -0.98
HMGB3P11-201ENST00000440127 PLCG2P16885 1265 aa8.92□□□□□ -0.98
HMGB3P11-201ENST00000440127 VGFO15240 615 aaPredicted RBP8.9□□□□□ -0.98
HMGB3P11-201ENST00000440127 ECM2O94769 699 aaPredicted RBP8.9□□□□□ -0.98
HMGB3P11-201ENST00000440127 PCDH10Q9P2E7 1040 aa8.9□□□□□ -0.98
HMGB3P11-201ENST00000440127 COLQQ9Y215 455 aaPredicted RBP8.88□□□□□ -0.99
HMGB3P11-201ENST00000440127 LCE2DQ5TA82 110 aaPredicted RBP8.86□□□□□ -0.99
HMGB3P11-201ENST00000440127 OCEL1Q9H607 264 aa8.86□□□□□ -0.99
HMGB3P11-201ENST00000440127 IRX5P78411 483 aaPredicted RBP8.83□□□□□ -1
HMGB3P11-201ENST00000440127 CABP2Q9NPB3 220 aa8.83□□□□□ -1
HMGB3P11-201ENST00000440127 G3V3G9 751 aa8.81□□□□□ -1
HMGB3P11-201ENST00000440127 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.81□□□□□ -1
HMGB3P11-201ENST00000440127 L3MBTL3Q96JM7 780 aaPredicted RBP8.8□□□□□ -1
HMGB3P11-201ENST00000440127 PKD2Q13563 968 aa8.79□□□□□ -1
HMGB3P11-201ENST00000440127 SLAIN1Q8ND83 568 aa8.79□□□□□ -1
HMGB3P11-201ENST00000440127 RNF25Q96BH1 459 aaPredicted RBP8.79□□□□□ -1
HMGB3P11-201ENST00000440127 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.78□□□□□ -1
HMGB3P11-201ENST00000440127 ZFP91Q96JP5 570 aaPredicted RBP8.78□□□□□ -1
HMGB3P11-201ENST00000440127 SOX12O15370 315 aa8.76□□□□□ -1.01
HMGB3P11-201ENST00000440127 STK25O00506 426 aa8.75□□□□□ -1.01
HMGB3P11-201ENST00000440127 C3orf67Q6ZVT6 689 aa8.75□□□□□ -1.01
HMGB3P11-201ENST00000440127 CDAN1Q8IWY9 1227 aa8.74□□□□□ -1.01
HMGB3P11-201ENST00000440127 BCL11BQ9C0K0 894 aaPredicted RBP8.74□□□□□ -1.01
HMGB3P11-201ENST00000440127 STK24Q9Y6E0 443 aa8.74□□□□□ -1.01
HMGB3P11-201ENST00000440127 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.73□□□□□ -1.01
HMGB3P11-201ENST00000440127 RGL2O15211 777 aa8.72□□□□□ -1.01
HMGB3P11-201ENST00000440127 EFCAB3Q8N7B9 438 aa8.72□□□□□ -1.01
HMGB3P11-201ENST00000440127 PDCD7Q8N8D1 485 aaKnown RBP8.72□□□□□ -1.01
HMGB3P11-201ENST00000440127 ILDR1Q86SU0 546 aaPredicted RBP8.71□□□□□ -1.02
HMGB3P11-201ENST00000440127 ST18O60284 1047 aa8.7□□□□□ -1.02
HMGB3P11-201ENST00000440127 NLRP6P59044 892 aa8.7□□□□□ -1.02
HMGB3P11-201ENST00000440127 SNPHO15079 494 aa8.67□□□□□ -1.02
HMGB3P11-201ENST00000440127 BOLA1Q9Y3E2 137 aa8.67□□□□□ -1.02
HMGB3P11-201ENST00000440127 RYDENQ9NUL5 291 aaKnown RBP8.66□□□□□ -1.02
HMGB3P11-201ENST00000440127 HS6ST3Q8IZP7 471 aa8.65□□□□□ -1.02
HMGB3P11-201ENST00000440127 AMER1Q5JTC6 1135 aaPredicted RBP8.64□□□□□ -1.03
HMGB3P11-201ENST00000440127 PHF8Q9UPP1 1060 aa8.61□□□□□ -1.03
HMGB3P11-201ENST00000440127 DCAF8L2P0C7V8 631 aa8.6□□□□□ -1.03
HMGB3P11-201ENST00000440127 CHGAP10645 457 aaKnown RBP8.6□□□□□ -1.03
HMGB3P11-201ENST00000440127 DPY19L2Q6NUT2 758 aa8.58□□□□□ -1.04
HMGB3P11-201ENST00000440127 MICALL2Q8IY33 904 aa8.57□□□□□ -1.04
HMGB3P11-201ENST00000440127 MARVELD3Q96A59 401 aa8.57□□□□□ -1.04
HMGB3P11-201ENST00000440127 TMEM121BQ9BXQ6 578 aaPredicted RBP8.57□□□□□ -1.04
HMGB3P11-201ENST00000440127 FBXO22Q8NEZ5 403 aa8.56□□□□□ -1.04
HMGB3P11-201ENST00000440127 MFRPQ9BY79 579 aa8.56□□□□□ -1.04
HMGB3P11-201ENST00000440127 DNAJC5Q9H3Z4 198 aa8.55□□□□□ -1.04
HMGB3P11-201ENST00000440127 MS4A4AQ96JQ5 239 aa8.54□□□□□ -1.04
HMGB3P11-201ENST00000440127 RIMBP2O15034 1052 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms