RNA–Protein interactions for RNA: ENST00000438801.1

HMGB1P18-201, Transcript of high mobility group box 1 pseudogene 18, humanhuman

BASIC

Gene HMGB1P18, Length 619 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P18-201ENST00000438801 CCDC61Q9Y6R9 512 aa10.23□□□□□ -0.77
HMGB1P18-201ENST00000438801 MS4A3Q96HJ5 214 aa10.19□□□□□ -0.78
HMGB1P18-201ENST00000438801 NUBP1P53384 320 aa10.18□□□□□ -0.78
HMGB1P18-201ENST00000438801 VASPP50552 380 aaPredicted RBP10.16□□□□□ -0.78
HMGB1P18-201ENST00000438801 LHX8Q68G74 356 aa10.16□□□□□ -0.78
HMGB1P18-201ENST00000438801 KIF12Q96FN5 646 aa10.16□□□□□ -0.78
HMGB1P18-201ENST00000438801 MAP3K13O43283 966 aa10.11□□□□□ -0.79
HMGB1P18-201ENST00000438801 FAM212AQ96EL1 285 aa10.11□□□□□ -0.79
HMGB1P18-201ENST00000438801 KLHL34Q8N239 644 aa10.09□□□□□ -0.79
HMGB1P18-201ENST00000438801 ASTLQ6HA08 431 aaPredicted RBP10.08□□□□□ -0.8
HMGB1P18-201ENST00000438801 ATMINO43313 823 aaPredicted RBP10.07□□□□□ -0.8
HMGB1P18-201ENST00000438801 PELP1Q8IZL8 1130 aaKnown RBP10.07□□□□□ -0.8
HMGB1P18-201ENST00000438801 DCAF8Q5TAQ9 597 aa10.06□□□□□ -0.8
HMGB1P18-201ENST00000438801 SGIP1Q9BQI5 828 aa10.04□□□□□ -0.8
HMGB1P18-201ENST00000438801 TRPC6Q9Y210 931 aa10.04□□□□□ -0.8
HMGB1P18-201ENST00000438801 PCDHB13Q9Y5F0 798 aa10.04□□□□□ -0.8
HMGB1P18-201ENST00000438801 BMP2KQ9NSY1 1161 aaPredicted RBP10.02□□□□□ -0.81
HMGB1P18-201ENST00000438801 TIE1P35590 1138 aa10.01□□□□□ -0.81
HMGB1P18-201ENST00000438801 ATN1P54259 1190 aaPredicted RBP10.01□□□□□ -0.81
HMGB1P18-201ENST00000438801 SLC39A7Q92504 469 aa10□□□□□ -0.81
HMGB1P18-201ENST00000438801 IFNLR1Q8IU57 520 aaPredicted RBP9.99□□□□□ -0.81
HMGB1P18-201ENST00000438801 METRNQ9UJH8 293 aa9.99□□□□□ -0.81
HMGB1P18-201ENST00000438801 C7P10643 843 aa9.98□□□□□ -0.81
HMGB1P18-201ENST00000438801 PYGBP11216 843 aa9.98□□□□□ -0.81
HMGB1P18-201ENST00000438801 IFNL1Q8IU54 200 aa9.98□□□□□ -0.81
HMGB1P18-201ENST00000438801 GSE1Q14687 1217 aa9.97□□□□□ -0.81
HMGB1P18-201ENST00000438801 POTEB2H3BUK9 544 aa9.96□□□□□ -0.82
HMGB1P18-201ENST00000438801 TTLL13PA6NNM8 815 aa9.95□□□□□ -0.82
HMGB1P18-201ENST00000438801 SPOCK2Q92563 424 aa9.94□□□□□ -0.82
HMGB1P18-201ENST00000438801 OTUD5Q96G74 571 aa9.89□□□□□ -0.83
HMGB1P18-201ENST00000438801 TMEM106CQ9BVX2 250 aa9.89□□□□□ -0.83
HMGB1P18-201ENST00000438801 TRIM35Q9UPQ4 493 aa9.89□□□□□ -0.83
HMGB1P18-201ENST00000438801 PCDHB8Q9UN66 801 aa9.88□□□□□ -0.83
HMGB1P18-201ENST00000438801 POTEFA5A3E0 1075 aa9.86□□□□□ -0.83
HMGB1P18-201ENST00000438801 CHRM1P11229 460 aaPredicted RBP9.86□□□□□ -0.83
HMGB1P18-201ENST00000438801 CIZ1Q9ULV3 898 aaPredicted RBP9.86□□□□□ -0.83
HMGB1P18-201ENST00000438801 IER5LQ5T953 404 aa9.84□□□□□ -0.83
HMGB1P18-201ENST00000438801 ZNF467Q7Z7K2 595 aaPredicted RBP9.84□□□□□ -0.83
HMGB1P18-201ENST00000438801 SEC24BO95487 1268 aa9.83□□□□□ -0.84
HMGB1P18-201ENST00000438801 POTEJP0CG39 1038 aa9.83□□□□□ -0.84
HMGB1P18-201ENST00000438801 COLQQ9Y215 455 aaPredicted RBP9.82□□□□□ -0.84
HMGB1P18-201ENST00000438801 MAMSTRQ6ZN01 415 aa9.8□□□□□ -0.84
HMGB1P18-201ENST00000438801 SCUBE2Q9NQ36 999 aa9.76□□□□□ -0.85
HMGB1P18-201ENST00000438801 PLCG2P16885 1265 aa9.74□□□□□ -0.85
HMGB1P18-201ENST00000438801 PSEN1P49768 467 aa9.74□□□□□ -0.85
HMGB1P18-201ENST00000438801 IRX5P78411 483 aaPredicted RBP9.74□□□□□ -0.85
HMGB1P18-201ENST00000438801 TRIM41Q8WV44 630 aa9.73□□□□□ -0.85
HMGB1P18-201ENST00000438801 PDAP1Q13442 181 aaKnown RBP9.72□□□□□ -0.85
HMGB1P18-201ENST00000438801 OCEL1Q9H607 264 aa9.71□□□□□ -0.86
HMGB1P18-201ENST00000438801 GOLGA2Q08379 1002 aa9.7□□□□□ -0.86
HMGB1P18-201ENST00000438801 MKRN3Q13064 507 aaKnown RBP9.69□□□□□ -0.86
HMGB1P18-201ENST00000438801 PDCD7Q8N8D1 485 aaKnown RBP9.63□□□□□ -0.87
HMGB1P18-201ENST00000438801 CABP2Q9NPB3 220 aa9.63□□□□□ -0.87
HMGB1P18-201ENST00000438801 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.62□□□□□ -0.87
HMGB1P18-201ENST00000438801 RNF25Q96BH1 459 aaPredicted RBP9.6□□□□□ -0.87
HMGB1P18-201ENST00000438801 RIOK3O14730 519 aaKnown RBP9.59□□□□□ -0.87
HMGB1P18-201ENST00000438801 SLAIN1Q8ND83 568 aa9.59□□□□□ -0.87
HMGB1P18-201ENST00000438801 ILDR1Q86SU0 546 aaPredicted RBP9.57□□□□□ -0.88
HMGB1P18-201ENST00000438801 FAM163AQ96GL9 167 aaPredicted RBP9.57□□□□□ -0.88
HMGB1P18-201ENST00000438801 L3MBTL3Q96JM7 780 aaPredicted RBP9.56□□□□□ -0.88
HMGB1P18-201ENST00000438801 POTEMA6NI47 508 aa9.55□□□□□ -0.88
HMGB1P18-201ENST00000438801 VGFO15240 615 aaPredicted RBP9.55□□□□□ -0.88
HMGB1P18-201ENST00000438801 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.55□□□□□ -0.88
HMGB1P18-201ENST00000438801 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.54□□□□□ -0.88
HMGB1P18-201ENST00000438801 LCE2DQ5TA82 110 aaPredicted RBP9.54□□□□□ -0.88
HMGB1P18-201ENST00000438801 ZFP91Q96JP5 570 aaPredicted RBP9.54□□□□□ -0.88
HMGB1P18-201ENST00000438801 DPY19L2Q6NUT2 758 aa9.53□□□□□ -0.88
HMGB1P18-201ENST00000438801 POTEGQ6S5H5 508 aa9.53□□□□□ -0.88
HMGB1P18-201ENST00000438801 EFCAB3Q8N7B9 438 aa9.53□□□□□ -0.88
HMGB1P18-201ENST00000438801 ECM2O94769 699 aaPredicted RBP9.51□□□□□ -0.89
HMGB1P18-201ENST00000438801 C3orf67Q6ZVT6 689 aa9.51□□□□□ -0.89
HMGB1P18-201ENST00000438801 PKD2Q13563 968 aa9.49□□□□□ -0.89
HMGB1P18-201ENST00000438801 TAOK2Q9UL54 1235 aa9.49□□□□□ -0.89
HMGB1P18-201ENST00000438801 BOLA1Q9Y3E2 137 aa9.47□□□□□ -0.89
HMGB1P18-201ENST00000438801 G3V3G9 751 aa9.46□□□□□ -0.9
HMGB1P18-201ENST00000438801 SOX12O15370 315 aa9.46□□□□□ -0.9
HMGB1P18-201ENST00000438801 BCL11BQ9C0K0 894 aaPredicted RBP9.44□□□□□ -0.9
HMGB1P18-201ENST00000438801 SNPHO15079 494 aa9.43□□□□□ -0.9
HMGB1P18-201ENST00000438801 RGL2O15211 777 aa9.43□□□□□ -0.9
HMGB1P18-201ENST00000438801 ST18O60284 1047 aa9.43□□□□□ -0.9
HMGB1P18-201ENST00000438801 STK24Q9Y6E0 443 aa9.42□□□□□ -0.9
HMGB1P18-201ENST00000438801 STK25O00506 426 aa9.41□□□□□ -0.9
HMGB1P18-201ENST00000438801 PHF8Q9UPP1 1060 aa9.41□□□□□ -0.9
HMGB1P18-201ENST00000438801 MS4A4AQ96JQ5 239 aa9.4□□□□□ -0.9
HMGB1P18-201ENST00000438801 TMEM121BQ9BXQ6 578 aaPredicted RBP9.4□□□□□ -0.9
HMGB1P18-201ENST00000438801 PCDH10Q9P2E7 1040 aa9.39□□□□□ -0.91
HMGB1P18-201ENST00000438801 NLRP6P59044 892 aa9.36□□□□□ -0.91
HMGB1P18-201ENST00000438801 MICALL2Q8IY33 904 aa9.36□□□□□ -0.91
HMGB1P18-201ENST00000438801 PLSCR2Q9NRY7 297 aa9.35□□□□□ -0.91
HMGB1P18-201ENST00000438801 FBXO22Q8NEZ5 403 aa9.34□□□□□ -0.91
HMGB1P18-201ENST00000438801 MFRPQ9BY79 579 aa9.32□□□□□ -0.92
HMGB1P18-201ENST00000438801 TMEM92Q6UXU6 159 aa9.29□□□□□ -0.92
HMGB1P18-201ENST00000438801 CDAN1Q8IWY9 1227 aa9.29□□□□□ -0.92
HMGB1P18-201ENST00000438801 MARVELD3Q96A59 401 aa9.29□□□□□ -0.92
HMGB1P18-201ENST00000438801 HOXB3P14651 431 aaPredicted RBP9.27□□□□□ -0.93
HMGB1P18-201ENST00000438801 EMP3P54852 163 aa9.25□□□□□ -0.93
HMGB1P18-201ENST00000438801 DOK7Q18PE1 504 aa9.24□□□□□ -0.93
HMGB1P18-201ENST00000438801 ZNF710Q8N1W2 664 aa9.24□□□□□ -0.93
HMGB1P18-201ENST00000438801 HS6ST3Q8IZP7 471 aa9.23□□□□□ -0.93
HMGB1P18-201ENST00000438801 RIMBP2O15034 1052 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms