RNA–Protein interactions for RNA: ENST00000433888.5

PTPN4-205, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 954 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-205ENST00000433888 NUBP1P53384 320 aa13.87□□□□□ -0.19
PTPN4-205ENST00000433888 MS4A3Q96HJ5 214 aa13.86□□□□□ -0.19
PTPN4-205ENST00000433888 ZBTB47Q9UFB7 747 aaPredicted RBP13.85□□□□□ -0.19
PTPN4-205ENST00000433888 LHX8Q68G74 356 aa13.84□□□□□ -0.19
PTPN4-205ENST00000433888 KIF12Q96FN5 646 aa13.83□□□□□ -0.2
PTPN4-205ENST00000433888 PELP1Q8IZL8 1130 aaKnown RBP13.76□□□□□ -0.21
PTPN4-205ENST00000433888 MAP3K13O43283 966 aa13.75□□□□□ -0.21
PTPN4-205ENST00000433888 VASPP50552 380 aaPredicted RBP13.75□□□□□ -0.21
PTPN4-205ENST00000433888 ASTLQ6HA08 431 aaPredicted RBP13.74□□□□□ -0.21
PTPN4-205ENST00000433888 ATMINO43313 823 aaPredicted RBP13.72□□□□□ -0.21
PTPN4-205ENST00000433888 TRPC6Q9Y210 931 aa13.68□□□□□ -0.22
PTPN4-205ENST00000433888 FAM212AQ96EL1 285 aa13.67□□□□□ -0.22
PTPN4-205ENST00000433888 SGIP1Q9BQI5 828 aa13.65□□□□□ -0.22
PTPN4-205ENST00000433888 POTEB2H3BUK9 544 aa13.63□□□□□ -0.23
PTPN4-205ENST00000433888 ATN1P54259 1190 aaPredicted RBP13.63□□□□□ -0.23
PTPN4-205ENST00000433888 BMP2KQ9NSY1 1161 aaPredicted RBP13.62□□□□□ -0.23
PTPN4-205ENST00000433888 TIE1P35590 1138 aa13.6□□□□□ -0.23
PTPN4-205ENST00000433888 DCAF8Q5TAQ9 597 aa13.6□□□□□ -0.23
PTPN4-205ENST00000433888 PCDHB13Q9Y5F0 798 aa13.6□□□□□ -0.23
PTPN4-205ENST00000433888 KLHL34Q8N239 644 aa13.59□□□□□ -0.23
PTPN4-205ENST00000433888 SLC39A7Q92504 469 aa13.58□□□□□ -0.24
PTPN4-205ENST00000433888 IFNL1Q8IU54 200 aa13.57□□□□□ -0.24
PTPN4-205ENST00000433888 IFNLR1Q8IU57 520 aaPredicted RBP13.57□□□□□ -0.24
PTPN4-205ENST00000433888 C7P10643 843 aa13.56□□□□□ -0.24
PTPN4-205ENST00000433888 METRNQ9UJH8 293 aa13.56□□□□□ -0.24
PTPN4-205ENST00000433888 TTLL13PA6NNM8 815 aa13.53□□□□□ -0.24
PTPN4-205ENST00000433888 PYGBP11216 843 aa13.52□□□□□ -0.25
PTPN4-205ENST00000433888 OTUD5Q96G74 571 aa13.5□□□□□ -0.25
PTPN4-205ENST00000433888 POTEFA5A3E0 1075 aa13.49□□□□□ -0.25
PTPN4-205ENST00000433888 GSE1Q14687 1217 aa13.48□□□□□ -0.25
PTPN4-205ENST00000433888 POTEJP0CG39 1038 aa13.47□□□□□ -0.25
PTPN4-205ENST00000433888 SPOCK2Q92563 424 aa13.45□□□□□ -0.26
PTPN4-205ENST00000433888 CHRM1P11229 460 aaPredicted RBP13.43□□□□□ -0.26
PTPN4-205ENST00000433888 TRIM35Q9UPQ4 493 aa13.42□□□□□ -0.26
PTPN4-205ENST00000433888 PCDHB8Q9UN66 801 aa13.41□□□□□ -0.26
PTPN4-205ENST00000433888 TMEM106CQ9BVX2 250 aa13.4□□□□□ -0.26
PTPN4-205ENST00000433888 COLQQ9Y215 455 aaPredicted RBP13.39□□□□□ -0.27
PTPN4-205ENST00000433888 IER5LQ5T953 404 aa13.38□□□□□ -0.27
PTPN4-205ENST00000433888 ZNF467Q7Z7K2 595 aaPredicted RBP13.32□□□□□ -0.28
PTPN4-205ENST00000433888 CIZ1Q9ULV3 898 aaPredicted RBP13.31□□□□□ -0.28
PTPN4-205ENST00000433888 SEC24BO95487 1268 aa13.3□□□□□ -0.28
PTPN4-205ENST00000433888 MAMSTRQ6ZN01 415 aa13.28□□□□□ -0.28
PTPN4-205ENST00000433888 IRX5P78411 483 aaPredicted RBP13.27□□□□□ -0.29
PTPN4-205ENST00000433888 PSEN1P49768 467 aa13.22□□□□□ -0.29
PTPN4-205ENST00000433888 SCUBE2Q9NQ36 999 aa13.21□□□□□ -0.29
PTPN4-205ENST00000433888 PLCG2P16885 1265 aa13.18□□□□□ -0.3
PTPN4-205ENST00000433888 OCEL1Q9H607 264 aa13.18□□□□□ -0.3
PTPN4-205ENST00000433888 PDAP1Q13442 181 aaKnown RBP13.16□□□□□ -0.3
PTPN4-205ENST00000433888 TRIM41Q8WV44 630 aa13.15□□□□□ -0.3
PTPN4-205ENST00000433888 PDCD7Q8N8D1 485 aaKnown RBP13.1□□□□□ -0.31
PTPN4-205ENST00000433888 ILDR1Q86SU0 546 aaPredicted RBP13.09□□□□□ -0.31
PTPN4-205ENST00000433888 MKRN3Q13064 507 aaKnown RBP13.08□□□□□ -0.32
PTPN4-205ENST00000433888 GOLGA2Q08379 1002 aa13.07□□□□□ -0.32
PTPN4-205ENST00000433888 LCE2DQ5TA82 110 aaPredicted RBP13.07□□□□□ -0.32
PTPN4-205ENST00000433888 RNF25Q96BH1 459 aaPredicted RBP13.06□□□□□ -0.32
PTPN4-205ENST00000433888 CABP2Q9NPB3 220 aa13.03□□□□□ -0.32
PTPN4-205ENST00000433888 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.02□□□□□ -0.339e-7■■■□□ 17.4
PTPN4-205ENST00000433888 SLAIN1Q8ND83 568 aa13.01□□□□□ -0.33
PTPN4-205ENST00000433888 POTEMA6NI47 508 aa13□□□□□ -0.33
PTPN4-205ENST00000433888 RIOK3O14730 519 aaKnown RBP12.99□□□□□ -0.33
PTPN4-205ENST00000433888 FAM163AQ96GL9 167 aaPredicted RBP12.98□□□□□ -0.33
PTPN4-205ENST00000433888 DPY19L2Q6NUT2 758 aa12.96□□□□□ -0.33
PTPN4-205ENST00000433888 POTEGQ6S5H5 508 aa12.96□□□□□ -0.33
PTPN4-205ENST00000433888 L3MBTL3Q96JM7 780 aaPredicted RBP12.95□□□□□ -0.34
PTPN4-205ENST00000433888 VGFO15240 615 aaPredicted RBP12.93□□□□□ -0.34
PTPN4-205ENST00000433888 EFCAB3Q8N7B9 438 aa12.93□□□□□ -0.34
PTPN4-205ENST00000433888 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.93□□□□□ -0.34
PTPN4-205ENST00000433888 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.92□□□□□ -0.34
PTPN4-205ENST00000433888 ZFP91Q96JP5 570 aaPredicted RBP12.92□□□□□ -0.34
PTPN4-205ENST00000433888 PKD2Q13563 968 aa12.9□□□□□ -0.34
PTPN4-205ENST00000433888 ST18O60284 1047 aa12.84□□□□□ -0.35
PTPN4-205ENST00000433888 C3orf67Q6ZVT6 689 aa12.84□□□□□ -0.35
PTPN4-205ENST00000433888 SOX12O15370 315 aa12.83□□□□□ -0.36
PTPN4-205ENST00000433888 ECM2O94769 699 aaPredicted RBP12.83□□□□□ -0.36
PTPN4-205ENST00000433888 BOLA1Q9Y3E2 137 aa12.83□□□□□ -0.36
PTPN4-205ENST00000433888 TMEM121BQ9BXQ6 578 aaPredicted RBP12.81□□□□□ -0.36
PTPN4-205ENST00000433888 RGL2O15211 777 aa12.79□□□□□ -0.36
PTPN4-205ENST00000433888 MS4A4AQ96JQ5 239 aa12.79□□□□□ -0.36
PTPN4-205ENST00000433888 PCDH10Q9P2E7 1040 aa12.78□□□□□ -0.36
PTPN4-205ENST00000433888 SNPHO15079 494 aa12.77□□□□□ -0.37
PTPN4-205ENST00000433888 BCL11BQ9C0K0 894 aaPredicted RBP12.77□□□□□ -0.37
PTPN4-205ENST00000433888 TAOK2Q9UL54 1235 aa12.77□□□□□ -0.37
PTPN4-205ENST00000433888 PHF8Q9UPP1 1060 aa12.77□□□□□ -0.37
PTPN4-205ENST00000433888 G3V3G9 751 aa12.72□□□□□ -0.37
PTPN4-205ENST00000433888 FBXO22Q8NEZ5 403 aa12.72□□□□□ -0.37
PTPN4-205ENST00000433888 STK24Q9Y6E0 443 aa12.72□□□□□ -0.37
PTPN4-205ENST00000433888 MICALL2Q8IY33 904 aa12.7□□□□□ -0.38
PTPN4-205ENST00000433888 STK25O00506 426 aa12.69□□□□□ -0.38
PTPN4-205ENST00000433888 MFRPQ9BY79 579 aa12.68□□□□□ -0.38
PTPN4-205ENST00000433888 NLRP6P59044 892 aa12.67□□□□□ -0.38
PTPN4-205ENST00000433888 PLSCR2Q9NRY7 297 aa12.67□□□□□ -0.38
PTPN4-205ENST00000433888 TMEM92Q6UXU6 159 aa12.66□□□□□ -0.38
PTPN4-205ENST00000433888 HOXB3P14651 431 aaPredicted RBP12.65□□□□□ -0.38
PTPN4-205ENST00000433888 CDAN1Q8IWY9 1227 aa12.64□□□□□ -0.39
PTPN4-205ENST00000433888 MARVELD3Q96A59 401 aa12.61□□□□□ -0.39
PTPN4-205ENST00000433888 POTEB3A0JP26 581 aa12.53□□□□□ -0.4
PTPN4-205ENST00000433888 POTEBQ6S5H4 581 aa12.53□□□□□ -0.4
PTPN4-205ENST00000433888 DOK7Q18PE1 504 aa12.52□□□□□ -0.41
PTPN4-205ENST00000433888 EMP3P54852 163 aa12.51□□□□□ -0.41
PTPN4-205ENST00000433888 HOXB1P14653 301 aaPredicted RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms