RNA–Protein interactions for RNA: ENST00000428599.6

CTNND1-208, Transcript of catenin delta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNND1, Length 6,016 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-208ENST00000428599 C14orf37Q86TY3 774 aa11.94□□□□□ -0.5
CTNND1-208ENST00000428599 HAP1P54257 671 aaPredicted RBP11.93□□□□□ -0.5
CTNND1-208ENST00000428599 EIF5BO60841 1220 aaKnown RBP11.9□□□□□ -0.5
CTNND1-208ENST00000428599 PPP1R15AO75807 674 aaPredicted RBP11.9□□□□□ -0.5
CTNND1-208ENST00000428599 CEP162Q5TB80 1403 aa11.9□□□□□ -0.5
CTNND1-208ENST00000428599 RRP7BPQ9NSQ0 103 aa11.89□□□□□ -0.51
CTNND1-208ENST00000428599 KDM2AQ9Y2K7 1162 aa11.88□□□□□ -0.51
CTNND1-208ENST00000428599 SALL2Q9Y467 1007 aaPredicted RBP11.88□□□□□ -0.51
CTNND1-208ENST00000428599 PLEKHG5O94827 1062 aa11.88□□□□□ -0.51
CTNND1-208ENST00000428599 FAM9BQ8IZU0 186 aa11.88□□□□□ -0.51
CTNND1-208ENST00000428599 TMC1Q8TDI8 760 aa11.87□□□□□ -0.51
CTNND1-208ENST00000428599 CEP164Q9UPV0 1460 aa11.87□□□□□ -0.51
CTNND1-208ENST00000428599 GLIPR1L2Q4G1C9 344 aa11.87□□□□□ -0.51
CTNND1-208ENST00000428599 HNRNPUQ00839 825 aaKnown RBP eCLIP11.86□□□□□ -0.51
CTNND1-208ENST00000428599 MROH2BQ7Z745 1585 aa11.85□□□□□ -0.51
CTNND1-208ENST00000428599 MYO15BQ96JP2 1530 aa11.85□□□□□ -0.51
CTNND1-208ENST00000428599 SMARCA2P51531 1590 aa11.84□□□□□ -0.51
CTNND1-208ENST00000428599 NCLP19338 710 aaKnown RBP11.84□□□□□ -0.51
CTNND1-208ENST00000428599 CFDP1Q9UEE9 299 aaPredicted RBP11.83□□□□□ -0.52
CTNND1-208ENST00000428599 CUX2O14529 1486 aa11.83□□□□□ -0.52
CTNND1-208ENST00000428599 ARXQ96QS3 562 aa11.83□□□□□ -0.52
CTNND1-208ENST00000428599 SENP3Q9H4L4 574 aaPredicted RBP11.83□□□□□ -0.52
CTNND1-208ENST00000428599 EIF4G1Q04637 1599 aaKnown RBP11.82□□□□□ -0.52
CTNND1-208ENST00000428599 FKBP8Q14318 412 aa11.82□□□□□ -0.52
CTNND1-208ENST00000428599 ARID4BQ4LE39 1312 aaPredicted RBP11.82□□□□□ -0.52
CTNND1-208ENST00000428599 CCDC136Q96JN2 1154 aa11.81□□□□□ -0.52
CTNND1-208ENST00000428599 TNIKQ9UKE5 1360 aa11.81□□□□□ -0.52
CTNND1-208ENST00000428599 CCDC88BA6NC98 1476 aa11.8□□□□□ -0.52
CTNND1-208ENST00000428599 DDX10Q13206 875 aaKnown RBP11.8□□□□□ -0.52
CTNND1-208ENST00000428599 ZRSR1Q15695 479 aaKnown RBP11.8□□□□□ -0.52
CTNND1-208ENST00000428599 NPHP1O15259 732 aa11.8□□□□□ -0.52
CTNND1-208ENST00000428599 CARMIL1Q5VZK9 1371 aa11.79□□□□□ -0.52
CTNND1-208ENST00000428599 PDS5BQ9NTI5 1447 aa11.79□□□□□ -0.52
CTNND1-208ENST00000428599 TULP1O00294 542 aaPredicted RBP11.79□□□□□ -0.52
CTNND1-208ENST00000428599 SOGA1O94964 1423 aa11.75□□□□□ -0.53
CTNND1-208ENST00000428599 RGL3Q3MIN7 710 aa11.74□□□□□ -0.53
CTNND1-208ENST00000428599 CASC1Q6TDU7 716 aa11.74□□□□□ -0.53
CTNND1-208ENST00000428599 GOLGA6L22H0YM25 854 aa11.74□□□□□ -0.53
CTNND1-208ENST00000428599 CFAP53Q96M91 514 aa11.73□□□□□ -0.53
CTNND1-208ENST00000428599 ABCC8Q09428 1581 aa11.73□□□□□ -0.53
CTNND1-208ENST00000428599 BECN1Q14457 450 aa11.73□□□□□ -0.53
CTNND1-208ENST00000428599 MRS2Q9HD23 443 aa11.73□□□□□ -0.53
CTNND1-208ENST00000428599 WIZO95785 1651 aa11.72□□□□□ -0.53
CTNND1-208ENST00000428599 ACIN1Q9UKV3 1341 aaKnown RBP11.72□□□□□ -0.53
CTNND1-208ENST00000428599 HIRIP3Q9BW71 556 aaPredicted RBP11.72□□□□□ -0.53
CTNND1-208ENST00000428599 FHAD1B1AJZ9 1412 aa11.71□□□□□ -0.54
CTNND1-208ENST00000428599 TRHP20396 242 aaPredicted RBP11.71□□□□□ -0.54
CTNND1-208ENST00000428599 CCNB3Q8WWL7 1395 aa11.7□□□□□ -0.54
CTNND1-208ENST00000428599 TDRD9Q8NDG6 1382 aaKnown RBP11.7□□□□□ -0.54
CTNND1-208ENST00000428599 ANP32EQ9BTT0 268 aa11.7□□□□□ -0.54
CTNND1-208ENST00000428599 TOP2AP11388 1531 aaKnown RBP11.69□□□□□ -0.54
CTNND1-208ENST00000428599 EIF4G2P78344 907 aaKnown RBP eCLIP11.69□□□□□ -0.54
CTNND1-208ENST00000428599 LMOD2Q6P5Q4 547 aa11.69□□□□□ -0.54
CTNND1-208ENST00000428599 TRIM44Q96DX7 344 aaPredicted RBP11.68□□□□□ -0.54
CTNND1-208ENST00000428599 NBR1Q14596 966 aa11.67□□□□□ -0.54
CTNND1-208ENST00000428599 CDCA8Q53HL2 280 aa11.67□□□□□ -0.54
CTNND1-208ENST00000428599 DDRGK1Q96HY6 314 aa11.67□□□□□ -0.54
CTNND1-208ENST00000428599 CADPSQ9ULU8 1353 aa11.66□□□□□ -0.54
CTNND1-208ENST00000428599 GOLGA2Q08379 1002 aa11.66□□□□□ -0.54
CTNND1-208ENST00000428599 PPM1GO15355 546 aaPredicted RBP11.66□□□□□ -0.54
CTNND1-208ENST00000428599 CARMIL2Q6F5E8 1435 aa11.65□□□□□ -0.54
CTNND1-208ENST00000428599 PTMAP06454 111 aaKnown RBP11.65□□□□□ -0.55
CTNND1-208ENST00000428599 ATAD2BQ9ULI0 1458 aa11.64□□□□□ -0.55
CTNND1-208ENST00000428599 FTSJ3Q8IY81 847 aaKnown RBP11.63□□□□□ -0.55
CTNND1-208ENST00000428599 MAPK8IP3Q9UPT6 1336 aa11.63□□□□□ -0.55
CTNND1-208ENST00000428599 SMARCA4P51532 1647 aa11.62□□□□□ -0.55
CTNND1-208ENST00000428599 GOLGA6L6A8MZA4 724 aa11.62□□□□□ -0.55
CTNND1-208ENST00000428599 MLECQ14165 292 aa11.61□□□□□ -0.55
CTNND1-208ENST00000428599 KNSTRNQ9Y448 316 aa11.61□□□□□ -0.55
CTNND1-208ENST00000428599 NUDCQ9Y266 331 aa11.61□□□□□ -0.55
CTNND1-208ENST00000428599 OS9Q13438 667 aaPredicted RBP11.61□□□□□ -0.55
CTNND1-208ENST00000428599 CLSTN1O94985 981 aa11.6□□□□□ -0.55
CTNND1-208ENST00000428599 POGKQ9P215 609 aa11.6□□□□□ -0.55
CTNND1-208ENST00000428599 FGD1P98174 961 aa11.6□□□□□ -0.55
CTNND1-208ENST00000428599 TNNT2P45379 298 aaPredicted RBP11.59□□□□□ -0.55
CTNND1-208ENST00000428599 CARD11Q9BXL7 1154 aa11.59□□□□□ -0.55
CTNND1-208ENST00000428599 LAS1LQ9Y4W2 734 aaKnown RBP11.59□□□□□ -0.55
CTNND1-208ENST00000428599 CHMP4BQ9H444 224 aaKnown RBP11.59□□□□□ -0.55
CTNND1-208ENST00000428599 TAOK2Q9UL54 1235 aa11.58□□□□□ -0.56
CTNND1-208ENST00000428599 TPRNQ4KMQ1 711 aa11.58□□□□□ -0.56
CTNND1-208ENST00000428599 NCBP3Q53F19 620 aaKnown RBP11.58□□□□□ -0.56
CTNND1-208ENST00000428599 DNTTIP2Q5QJE6 756 aaKnown RBP11.58□□□□□ -0.56
CTNND1-208ENST00000428599 KANK1Q14678 1352 aa11.57□□□□□ -0.56
CTNND1-208ENST00000428599 SIN3AQ96ST3 1273 aa11.56□□□□□ -0.56
CTNND1-208ENST00000428599 NRDCO43847 1150 aa11.55□□□□□ -0.56
CTNND1-208ENST00000428599 KCNJ4P48050 445 aa11.55□□□□□ -0.56
CTNND1-208ENST00000428599 ARHGAP35Q9NRY4 1499 aa11.55□□□□□ -0.56
CTNND1-208ENST00000428599 NAP1L2Q9ULW6 460 aaPredicted RBP11.55□□□□□ -0.56
CTNND1-208ENST00000428599 PNNQ9H307 717 aaKnown RBP11.55□□□□□ -0.56
CTNND1-208ENST00000428599 VPS8Q8N3P4 1428 aa11.54□□□□□ -0.56
CTNND1-208ENST00000428599 HDGFP51858 240 aaKnown RBP11.54□□□□□ -0.56
CTNND1-208ENST00000428599 ISY1Q9ULR0 285 aaKnown RBP11.54□□□□□ -0.56
CTNND1-208ENST00000428599 FANCD2Q9BXW9 1451 aa11.54□□□□□ -0.56
CTNND1-208ENST00000428599 FMN1Q68DA7 1419 aa11.53□□□□□ -0.56
CTNND1-208ENST00000428599 GGT6Q6P531 493 aa11.53□□□□□ -0.56
CTNND1-208ENST00000428599 IRX6P78412 446 aaPredicted RBP11.52□□□□□ -0.56
CTNND1-208ENST00000428599 MIER1Q8N108 512 aa11.52□□□□□ -0.57
CTNND1-208ENST00000428599 RAPGEF2Q9Y4G8 1499 aa11.52□□□□□ -0.57
CTNND1-208ENST00000428599 MS4A1P11836 297 aa11.51□□□□□ -0.57
CTNND1-208ENST00000428599 NEUROD2Q15784 382 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms