RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 CLCN6P51797 869 aa10.52□□□□□ -0.73
HMGB3P20-201ENST00000417997 IFNLR1Q8IU57 520 aaPredicted RBP10.52□□□□□ -0.73
HMGB3P20-201ENST00000417997 DCAF8Q5TAQ9 597 aa10.51□□□□□ -0.73
HMGB3P20-201ENST00000417997 CCDC61Q9Y6R9 512 aa10.51□□□□□ -0.73
HMGB3P20-201ENST00000417997 GALR2O43603 387 aaPredicted RBP10.49□□□□□ -0.73
HMGB3P20-201ENST00000417997 SPOCK2Q92563 424 aa10.47□□□□□ -0.73
HMGB3P20-201ENST00000417997 DCBLD2Q96PD2 775 aa10.47□□□□□ -0.73
HMGB3P20-201ENST00000417997 MS4A3Q96HJ5 214 aa10.45□□□□□ -0.74
HMGB3P20-201ENST00000417997 KIF12Q96FN5 646 aa10.44□□□□□ -0.74
HMGB3P20-201ENST00000417997 MAP3K13O43283 966 aa10.42□□□□□ -0.74
HMGB3P20-201ENST00000417997 GSE1Q14687 1217 aa10.41□□□□□ -0.74
HMGB3P20-201ENST00000417997 CIZ1Q9ULV3 898 aaPredicted RBP10.41□□□□□ -0.74
HMGB3P20-201ENST00000417997 PYGBP11216 843 aa10.4□□□□□ -0.74
HMGB3P20-201ENST00000417997 PCDHB13Q9Y5F0 798 aa10.38□□□□□ -0.75
HMGB3P20-201ENST00000417997 POTEIP0CG38 1075 aa10.37□□□□□ -0.75
HMGB3P20-201ENST00000417997 IFNL1Q8IU54 200 aa10.31□□□□□ -0.76
HMGB3P20-201ENST00000417997 TRPC6Q9Y210 931 aa10.31□□□□□ -0.76
HMGB3P20-201ENST00000417997 SGIP1Q9BQI5 828 aa10.3□□□□□ -0.76
HMGB3P20-201ENST00000417997 PCDHB8Q9UN66 801 aa10.28□□□□□ -0.76
HMGB3P20-201ENST00000417997 ATMINO43313 823 aaPredicted RBP10.26□□□□□ -0.77
HMGB3P20-201ENST00000417997 BMP2KQ9NSY1 1161 aaPredicted RBP10.26□□□□□ -0.77
HMGB3P20-201ENST00000417997 ASTLQ6HA08 431 aaPredicted RBP10.25□□□□□ -0.77
HMGB3P20-201ENST00000417997 TIE1P35590 1138 aa10.24□□□□□ -0.77
HMGB3P20-201ENST00000417997 ATN1P54259 1190 aaPredicted RBP10.24□□□□□ -0.77
HMGB3P20-201ENST00000417997 PELP1Q8IZL8 1130 aaKnown RBP10.24□□□□□ -0.77
HMGB3P20-201ENST00000417997 CHRM1P11229 460 aaPredicted RBP10.23□□□□□ -0.77
HMGB3P20-201ENST00000417997 ZNF467Q7Z7K2 595 aaPredicted RBP10.22□□□□□ -0.77
HMGB3P20-201ENST00000417997 TMEM106CQ9BVX2 250 aa10.22□□□□□ -0.77
HMGB3P20-201ENST00000417997 TTLL13PA6NNM8 815 aa10.21□□□□□ -0.77
HMGB3P20-201ENST00000417997 TRIM41Q8WV44 630 aa10.2□□□□□ -0.78
HMGB3P20-201ENST00000417997 SLC39A7Q92504 469 aa10.18□□□□□ -0.78
HMGB3P20-201ENST00000417997 METRNQ9UJH8 293 aa10.18□□□□□ -0.78
HMGB3P20-201ENST00000417997 LHX8Q68G74 356 aa10.17□□□□□ -0.78
HMGB3P20-201ENST00000417997 TRIM35Q9UPQ4 493 aa10.16□□□□□ -0.78
HMGB3P20-201ENST00000417997 C7P10643 843 aa10.15□□□□□ -0.78
HMGB3P20-201ENST00000417997 PSEN1P49768 467 aa10.14□□□□□ -0.79
HMGB3P20-201ENST00000417997 PDAP1Q13442 181 aaKnown RBP10.12□□□□□ -0.79
HMGB3P20-201ENST00000417997 ECM2O94769 699 aaPredicted RBP10.11□□□□□ -0.79
HMGB3P20-201ENST00000417997 SEC24BO95487 1268 aa10.11□□□□□ -0.79
HMGB3P20-201ENST00000417997 GOLGA2Q08379 1002 aa10.1□□□□□ -0.79
HMGB3P20-201ENST00000417997 RIOK3O14730 519 aaKnown RBP10.08□□□□□ -0.8
HMGB3P20-201ENST00000417997 PKD2Q13563 968 aa10.07□□□□□ -0.8
HMGB3P20-201ENST00000417997 IER5LQ5T953 404 aa10.06□□□□□ -0.8
HMGB3P20-201ENST00000417997 RNF25Q96BH1 459 aaPredicted RBP10.06□□□□□ -0.8
HMGB3P20-201ENST00000417997 COLQQ9Y215 455 aaPredicted RBP10.05□□□□□ -0.8
HMGB3P20-201ENST00000417997 POTEB2H3BUK9 544 aa10.04□□□□□ -0.8
HMGB3P20-201ENST00000417997 PLCG2P16885 1265 aa10.04□□□□□ -0.8
HMGB3P20-201ENST00000417997 MKRN3Q13064 507 aaKnown RBP10.04□□□□□ -0.8
HMGB3P20-201ENST00000417997 CABP2Q9NPB3 220 aa10.03□□□□□ -0.8
HMGB3P20-201ENST00000417997 POTEFA5A3E0 1075 aa10.02□□□□□ -0.81
HMGB3P20-201ENST00000417997 VGFO15240 615 aaPredicted RBP10.01□□□□□ -0.81
HMGB3P20-201ENST00000417997 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10□□□□□ -0.81
HMGB3P20-201ENST00000417997 RGL2O15211 777 aa10□□□□□ -0.81
HMGB3P20-201ENST00000417997 ZFP91Q96JP5 570 aaPredicted RBP10□□□□□ -0.81
HMGB3P20-201ENST00000417997 TAOK2Q9UL54 1235 aa9.99□□□□□ -0.81
HMGB3P20-201ENST00000417997 IRX5P78411 483 aaPredicted RBP9.97□□□□□ -0.81
HMGB3P20-201ENST00000417997 OCEL1Q9H607 264 aa9.97□□□□□ -0.81
HMGB3P20-201ENST00000417997 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.97□□□□□ -0.81
HMGB3P20-201ENST00000417997 MAMSTRQ6ZN01 415 aa9.95□□□□□ -0.82
HMGB3P20-201ENST00000417997 POTEJP0CG39 1038 aa9.94□□□□□ -0.82
HMGB3P20-201ENST00000417997 OTUD5Q96G74 571 aa9.94□□□□□ -0.82
HMGB3P20-201ENST00000417997 STK25O00506 426 aa9.93□□□□□ -0.82
HMGB3P20-201ENST00000417997 EFCAB3Q8N7B9 438 aa9.93□□□□□ -0.82
HMGB3P20-201ENST00000417997 BCL11BQ9C0K0 894 aaPredicted RBP9.93□□□□□ -0.82
HMGB3P20-201ENST00000417997 SCUBE2Q9NQ36 999 aa9.93□□□□□ -0.82
HMGB3P20-201ENST00000417997 STK24Q9Y6E0 443 aa9.93□□□□□ -0.82
HMGB3P20-201ENST00000417997 PDCD7Q8N8D1 485 aaKnown RBP9.89□□□□□ -0.83
HMGB3P20-201ENST00000417997 DCAF8L2P0C7V8 631 aa9.86□□□□□ -0.83
HMGB3P20-201ENST00000417997 DPY19L2Q6NUT2 758 aa9.85□□□□□ -0.83
HMGB3P20-201ENST00000417997 L3MBTL3Q96JM7 780 aaPredicted RBP9.85□□□□□ -0.83
HMGB3P20-201ENST00000417997 G3V3G9 751 aa9.84□□□□□ -0.83
HMGB3P20-201ENST00000417997 SOX12O15370 315 aa9.83□□□□□ -0.84
HMGB3P20-201ENST00000417997 PHF8Q9UPP1 1060 aa9.83□□□□□ -0.84
HMGB3P20-201ENST00000417997 CHGAP10645 457 aaKnown RBP9.81□□□□□ -0.84
HMGB3P20-201ENST00000417997 C3orf67Q6ZVT6 689 aa9.81□□□□□ -0.84
HMGB3P20-201ENST00000417997 SLAIN1Q8ND83 568 aa9.81□□□□□ -0.84
HMGB3P20-201ENST00000417997 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.81□□□□□ -0.84
HMGB3P20-201ENST00000417997 ILDR1Q86SU0 546 aaPredicted RBP9.8□□□□□ -0.84
HMGB3P20-201ENST00000417997 NLRP6P59044 892 aa9.78□□□□□ -0.84
HMGB3P20-201ENST00000417997 BOLA1Q9Y3E2 137 aa9.78□□□□□ -0.84
HMGB3P20-201ENST00000417997 HS6ST3Q8IZP7 471 aa9.76□□□□□ -0.85
HMGB3P20-201ENST00000417997 MS4A4AQ96JQ5 239 aa9.75□□□□□ -0.85
HMGB3P20-201ENST00000417997 AMER1Q5JTC6 1135 aaPredicted RBP9.74□□□□□ -0.85
HMGB3P20-201ENST00000417997 MFRPQ9BY79 579 aa9.74□□□□□ -0.85
HMGB3P20-201ENST00000417997 FBXO22Q8NEZ5 403 aa9.72□□□□□ -0.85
HMGB3P20-201ENST00000417997 RTN4Q9NQC3 1192 aaKnown RBP9.72□□□□□ -0.85
HMGB3P20-201ENST00000417997 FAM163AQ96GL9 167 aaPredicted RBP9.71□□□□□ -0.86
HMGB3P20-201ENST00000417997 MICALL2Q8IY33 904 aa9.7□□□□□ -0.86
HMGB3P20-201ENST00000417997 TMEM121BQ9BXQ6 578 aaPredicted RBP9.66□□□□□ -0.86
HMGB3P20-201ENST00000417997 SNPHO15079 494 aa9.63□□□□□ -0.87
HMGB3P20-201ENST00000417997 NKX1-1Q15270 411 aaPredicted RBP9.62□□□□□ -0.87
HMGB3P20-201ENST00000417997 PPP1R37O75864 691 aa9.61□□□□□ -0.87
HMGB3P20-201ENST00000417997 TMEM92Q6UXU6 159 aa9.58□□□□□ -0.88
HMGB3P20-201ENST00000417997 RYDENQ9NUL5 291 aaKnown RBP9.58□□□□□ -0.88
HMGB3P20-201ENST00000417997 ST18O60284 1047 aa9.57□□□□□ -0.88
HMGB3P20-201ENST00000417997 DNAJC5Q9H3Z4 198 aa9.57□□□□□ -0.88
HMGB3P20-201ENST00000417997 POTEMA6NI47 508 aa9.56□□□□□ -0.88
HMGB3P20-201ENST00000417997 LCE2DQ5TA82 110 aaPredicted RBP9.56□□□□□ -0.88
HMGB3P20-201ENST00000417997 POTEGQ6S5H5 508 aa9.55□□□□□ -0.88
HMGB3P20-201ENST00000417997 ZNF710Q8N1W2 664 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms