RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 SPOCK2Q92563 424 aa10.97□□□□□ -0.65
HMGB3P18-201ENST00000406327 OTUD5Q96G74 571 aa10.95□□□□□ -0.66
HMGB3P18-201ENST00000406327 PKD2Q13563 968 aa10.94□□□□□ -0.66
HMGB3P18-201ENST00000406327 PAK3O75914 559 aaPredicted RBP10.92□□□□□ -0.66
HMGB3P18-201ENST00000406327 PLCD3Q8N3E9 789 aa10.9□□□□□ -0.66
HMGB3P18-201ENST00000406327 POTEB2H3BUK9 544 aa10.89□□□□□ -0.67
HMGB3P18-201ENST00000406327 PLEKHG5O94827 1062 aa10.88□□□□□ -0.67
HMGB3P18-201ENST00000406327 POTEMA6NI47 508 aa10.86□□□□□ -0.67
HMGB3P18-201ENST00000406327 HAP1P54257 671 aaPredicted RBP10.85□□□□□ -0.67
HMGB3P18-201ENST00000406327 PHF12Q96QT6 1004 aa10.85□□□□□ -0.67
HMGB3P18-201ENST00000406327 ZBTB47Q9UFB7 747 aaPredicted RBP10.85□□□□□ -0.67
HMGB3P18-201ENST00000406327 ECM2O94769 699 aaPredicted RBP10.84□□□□□ -0.67
HMGB3P18-201ENST00000406327 MIER1Q8N108 512 aa10.83□□□□□ -0.68
HMGB3P18-201ENST00000406327 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.83□□□□□ -0.68
HMGB3P18-201ENST00000406327 NPM1P06748 294 aaKnown RBP eCLIP10.82□□□□□ -0.68
HMGB3P18-201ENST00000406327 POTEGQ6S5H5 508 aa10.81□□□□□ -0.68
HMGB3P18-201ENST00000406327 PELP1Q8IZL8 1130 aaKnown RBP10.78□□□□□ -0.68
HMGB3P18-201ENST00000406327 BBXQ8WY36 941 aaPredicted RBP10.78□□□□□ -0.68
HMGB3P18-201ENST00000406327 VSIG10Q8N0Z9 540 aa10.75□□□□□ -0.69
HMGB3P18-201ENST00000406327 PCDH10Q9P2E7 1040 aa10.75□□□□□ -0.69
HMGB3P18-201ENST00000406327 METRNQ9UJH8 293 aa10.74□□□□□ -0.69
HMGB3P18-201ENST00000406327 MNX1P50219 401 aaPredicted RBP10.73□□□□□ -0.69
HMGB3P18-201ENST00000406327 ASTLQ6HA08 431 aaPredicted RBP10.73□□□□□ -0.69
HMGB3P18-201ENST00000406327 SLC39A7Q92504 469 aa10.73□□□□□ -0.69
HMGB3P18-201ENST00000406327 C7P10643 843 aa10.72□□□□□ -0.69
HMGB3P18-201ENST00000406327 TRIM41Q8WV44 630 aa10.72□□□□□ -0.69
HMGB3P18-201ENST00000406327 ATMINO43313 823 aaPredicted RBP10.7□□□□□ -0.7
HMGB3P18-201ENST00000406327 MS4A3Q96HJ5 214 aa10.7□□□□□ -0.7
HMGB3P18-201ENST00000406327 MAMSTRQ6ZN01 415 aa10.69□□□□□ -0.7
HMGB3P18-201ENST00000406327 BCANQ96GW7 911 aa10.69□□□□□ -0.7
HMGB3P18-201ENST00000406327 CIZ1Q9ULV3 898 aaPredicted RBP10.67□□□□□ -0.7
HMGB3P18-201ENST00000406327 RGL2O15211 777 aa10.65□□□□□ -0.7
HMGB3P18-201ENST00000406327 POTEJP0CG39 1038 aa10.65□□□□□ -0.7
HMGB3P18-201ENST00000406327 PAXIP1Q6ZW49 1069 aaPredicted RBP10.63□□□□□ -0.71
HMGB3P18-201ENST00000406327 CFAP44Q96MT7 982 aa10.61□□□□□ -0.71
HMGB3P18-201ENST00000406327 SCUBE2Q9NQ36 999 aa10.61□□□□□ -0.71
HMGB3P18-201ENST00000406327 GSE1Q14687 1217 aa10.6□□□□□ -0.71
HMGB3P18-201ENST00000406327 SPRYD3Q8NCJ5 442 aa10.6□□□□□ -0.71
HMGB3P18-201ENST00000406327 FAM163AQ96GL9 167 aaPredicted RBP10.58□□□□□ -0.72
HMGB3P18-201ENST00000406327 TAOK2Q9UL54 1235 aa10.58□□□□□ -0.72
HMGB3P18-201ENST00000406327 ATN1P54259 1190 aaPredicted RBP10.57□□□□□ -0.72
HMGB3P18-201ENST00000406327 TSPYL2Q9H2G4 693 aaPredicted RBP10.57□□□□□ -0.72
HMGB3P18-201ENST00000406327 LCE2DQ5TA82 110 aaPredicted RBP10.56□□□□□ -0.72
HMGB3P18-201ENST00000406327 CHGAP10645 457 aaKnown RBP10.55□□□□□ -0.72
HMGB3P18-201ENST00000406327 CCDC61Q9Y6R9 512 aa10.55□□□□□ -0.72
HMGB3P18-201ENST00000406327 KIF12Q96FN5 646 aa10.51□□□□□ -0.73
HMGB3P18-201ENST00000406327 HS6ST3Q8IZP7 471 aa10.5□□□□□ -0.73
HMGB3P18-201ENST00000406327 BMP2KQ9NSY1 1161 aaPredicted RBP10.48□□□□□ -0.73
HMGB3P18-201ENST00000406327 POTEFA5A3E0 1075 aa10.47□□□□□ -0.73
HMGB3P18-201ENST00000406327 TIE1P35590 1138 aa10.46□□□□□ -0.73
HMGB3P18-201ENST00000406327 FAM212AQ96EL1 285 aa10.46□□□□□ -0.73
HMGB3P18-201ENST00000406327 NUBP1P53384 320 aa10.45□□□□□ -0.74
HMGB3P18-201ENST00000406327 KDM2AQ9Y2K7 1162 aa10.45□□□□□ -0.74
HMGB3P18-201ENST00000406327 DCAF8Q5TAQ9 597 aa10.44□□□□□ -0.74
HMGB3P18-201ENST00000406327 DNAJC5Q9H3Z4 198 aa10.44□□□□□ -0.74
HMGB3P18-201ENST00000406327 TRPC6Q9Y210 931 aa10.43□□□□□ -0.74
HMGB3P18-201ENST00000406327 RIOK3O14730 519 aaKnown RBP10.42□□□□□ -0.74
HMGB3P18-201ENST00000406327 MAP3K13O43283 966 aa10.42□□□□□ -0.74
HMGB3P18-201ENST00000406327 SEC24BO95487 1268 aa10.41□□□□□ -0.74
HMGB3P18-201ENST00000406327 TSHZ2Q9NRE2 1034 aa10.41□□□□□ -0.74
HMGB3P18-201ENST00000406327 CDAN1Q8IWY9 1227 aa10.38□□□□□ -0.75
HMGB3P18-201ENST00000406327 TTLL13PA6NNM8 815 aa10.37□□□□□ -0.75
HMGB3P18-201ENST00000406327 VGFO15240 615 aaPredicted RBP10.37□□□□□ -0.75
HMGB3P18-201ENST00000406327 RNF25Q96BH1 459 aaPredicted RBP10.37□□□□□ -0.75
HMGB3P18-201ENST00000406327 COLQQ9Y215 455 aaPredicted RBP10.37□□□□□ -0.75
HMGB3P18-201ENST00000406327 CHRM1P11229 460 aaPredicted RBP10.36□□□□□ -0.75
HMGB3P18-201ENST00000406327 RYDENQ9NUL5 291 aaKnown RBP10.35□□□□□ -0.75
HMGB3P18-201ENST00000406327 IER5LQ5T953 404 aa10.34□□□□□ -0.75
HMGB3P18-201ENST00000406327 RASEFQ8IZ41 740 aa10.34□□□□□ -0.75
HMGB3P18-201ENST00000406327 STK25O00506 426 aa10.31□□□□□ -0.76
HMGB3P18-201ENST00000406327 NBR1Q14596 966 aa10.31□□□□□ -0.76
HMGB3P18-201ENST00000406327 SGIP1Q9BQI5 828 aa10.31□□□□□ -0.76
HMGB3P18-201ENST00000406327 TRIM35Q9UPQ4 493 aa10.31□□□□□ -0.76
HMGB3P18-201ENST00000406327 SLAIN1Q8ND83 568 aa10.28□□□□□ -0.76
HMGB3P18-201ENST00000406327 PCDHB13Q9Y5F0 798 aa10.27□□□□□ -0.77
HMGB3P18-201ENST00000406327 ST18O60284 1047 aa10.26□□□□□ -0.77
HMGB3P18-201ENST00000406327 PRKCSHP14314 528 aaPredicted RBP10.26□□□□□ -0.77
HMGB3P18-201ENST00000406327 TPRNQ4KMQ1 711 aa10.26□□□□□ -0.77
HMGB3P18-201ENST00000406327 GTPBP6O43824 516 aaPredicted RBP10.23□□□□□ -0.77
HMGB3P18-201ENST00000406327 NKX1-1Q15270 411 aaPredicted RBP10.23□□□□□ -0.77
HMGB3P18-201ENST00000406327 STK24Q9Y6E0 443 aa10.22□□□□□ -0.77
HMGB3P18-201ENST00000406327 BCL11BQ9C0K0 894 aaPredicted RBP10.21□□□□□ -0.77
HMGB3P18-201ENST00000406327 PLCG2P16885 1265 aa10.2□□□□□ -0.78
HMGB3P18-201ENST00000406327 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.19□□□□□ -0.78
HMGB3P18-201ENST00000406327 PYGBP11216 843 aa10.19□□□□□ -0.78
HMGB3P18-201ENST00000406327 ZFP91Q96JP5 570 aaPredicted RBP10.19□□□□□ -0.78
HMGB3P18-201ENST00000406327 ZNF467Q7Z7K2 595 aaPredicted RBP10.18□□□□□ -0.78
HMGB3P18-201ENST00000406327 IFNL1Q8IU54 200 aa10.18□□□□□ -0.78
HMGB3P18-201ENST00000406327 TMEM106CQ9BVX2 250 aa10.18□□□□□ -0.78
HMGB3P18-201ENST00000406327 TMEM121BQ9BXQ6 578 aaPredicted RBP10.15□□□□□ -0.78
HMGB3P18-201ENST00000406327 MMRN1Q13201 1228 aa10.14□□□□□ -0.79
HMGB3P18-201ENST00000406327 IRX5P78411 483 aaPredicted RBP10.13□□□□□ -0.79
HMGB3P18-201ENST00000406327 SPNS2Q8IVW8 549 aa10.13□□□□□ -0.79
HMGB3P18-201ENST00000406327 SNPHO15079 494 aa10.12□□□□□ -0.79
HMGB3P18-201ENST00000406327 P3H3Q8IVL6 736 aa10.11□□□□□ -0.79
HMGB3P18-201ENST00000406327 OCEL1Q9H607 264 aa10.1□□□□□ -0.79
HMGB3P18-201ENST00000406327 PDAP1Q13442 181 aaKnown RBP10.09□□□□□ -0.79
HMGB3P18-201ENST00000406327 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.07□□□□□ -0.8
HMGB3P18-201ENST00000406327 MARVELD3Q96A59 401 aa10.03□□□□□ -0.8
HMGB3P18-201ENST00000406327 WDR70Q9NW82 654 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms