RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 LMOD2Q6P5Q4 547 aa15.25■□□□□ 0.03
TTC28-201ENST00000397906 UPF2Q9HAU5 1272 aaKnown RBP15.24■□□□□ 0.03
TTC28-201ENST00000397906 PLEKHD1A6NEE1 506 aa15.23■□□□□ 0.03
TTC28-201ENST00000397906 PPM1GO15355 546 aaPredicted RBP15.23■□□□□ 0.03
TTC28-201ENST00000397906 SENP3-EIF4A1A0A087X0R7 540 aa15.2■□□□□ 0.02
TTC28-201ENST00000397906 CCDC180Q9P1Z9 1646 aa15.2■□□□□ 0.02
TTC28-201ENST00000397906 MRS2Q9HD23 443 aa15.17■□□□□ 0.02
TTC28-201ENST00000397906 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.16■□□□□ 0.02
TTC28-201ENST00000397906 ANP32BQ92688 251 aaKnown RBP15.16■□□□□ 0.02
TTC28-201ENST00000397906 MYH16Q9H6N6 1097 aa15.15■□□□□ 0.02
TTC28-201ENST00000397906 CLIP1P30622 1438 aa15.15■□□□□ 0.02
TTC28-201ENST00000397906 BAZ1BQ9UIG0 1483 aaKnown RBP15.15■□□□□ 0.02
TTC28-201ENST00000397906 MLECQ14165 292 aa15.15■□□□□ 0.02
TTC28-201ENST00000397906 IRX6P78412 446 aaPredicted RBP15.13■□□□□ 0.01
TTC28-201ENST00000397906 CFDP1Q9UEE9 299 aaPredicted RBP15.12■□□□□ 0.01
TTC28-201ENST00000397906 NPHP1O15259 732 aa15.12■□□□□ 0.01
TTC28-201ENST00000397906 CCDC136Q96JN2 1154 aa15.11■□□□□ 0.01
TTC28-201ENST00000397906 EIF4G1Q04637 1599 aaKnown RBP15.08■□□□□ 0
TTC28-201ENST00000397906 ACIN1Q9UKV3 1341 aaKnown RBP15.08■□□□□ 0
TTC28-201ENST00000397906 TULP1O00294 542 aaPredicted RBP15.07■□□□□ 0
TTC28-201ENST00000397906 LAS1LQ9Y4W2 734 aaKnown RBP15.07■□□□□ 0
TTC28-201ENST00000397906 RSF1Q96T23 1441 aaPredicted RBP15.07■□□□□ 0
TTC28-201ENST00000397906 POGKQ9P215 609 aa15.06■□□□□ 0
TTC28-201ENST00000397906 TNNT2P45379 298 aaPredicted RBP15.06■□□□□ 0
TTC28-201ENST00000397906 EIF4G2P78344 907 aaKnown RBP eCLIP15.05■□□□□ -0
TTC28-201ENST00000397906 NEUROD2Q15784 382 aa15.04■□□□□ -0
TTC28-201ENST00000397906 TAOK2Q9UL54 1235 aa15.03■□□□□ -0
TTC28-201ENST00000397906 SOX12O15370 315 aa15.03■□□□□ -0
TTC28-201ENST00000397906 KNSTRNQ9Y448 316 aa15.01□□□□□ -0.01
TTC28-201ENST00000397906 CDK11BP21127 795 aaKnown RBP15□□□□□ -0.01
TTC28-201ENST00000397906 NBR1Q14596 966 aa15□□□□□ -0.01
TTC28-201ENST00000397906 TPRNQ4KMQ1 711 aa15□□□□□ -0.01
TTC28-201ENST00000397906 CFAP53Q96M91 514 aa14.99□□□□□ -0.01
TTC28-201ENST00000397906 CARD11Q9BXL7 1154 aa14.99□□□□□ -0.01
TTC28-201ENST00000397906 GOLGA3Q08378 1498 aa14.98□□□□□ -0.01
TTC28-201ENST00000397906 WRNQ14191 1432 aaPredicted RBP eCLIP14.97□□□□□ -0.01
TTC28-201ENST00000397906 SAFB2Q14151 953 aaKnown RBP eCLIP14.96□□□□□ -0.014e-6■■■□□ 19
TTC28-201ENST00000397906 KIF27Q86VH2 1401 aa14.95□□□□□ -0.02
TTC28-201ENST00000397906 CEP162Q5TB80 1403 aa14.94□□□□□ -0.02
TTC28-201ENST00000397906 NACADO15069 1562 aa14.92□□□□□ -0.02
TTC28-201ENST00000397906 MAPK8IP3Q9UPT6 1336 aa14.92□□□□□ -0.02
TTC28-201ENST00000397906 CC2D1BQ5T0F9 858 aaKnown RBP14.92□□□□□ -0.02
TTC28-201ENST00000397906 EIF5BO60841 1220 aaKnown RBP14.92□□□□□ -0.02
TTC28-201ENST00000397906 FTSJ3Q8IY81 847 aaKnown RBP14.92□□□□□ -0.02
TTC28-201ENST00000397906 DCAF1Q9Y4B6 1507 aa14.9□□□□□ -0.02
TTC28-201ENST00000397906 U2SURPO15042 1029 aaKnown RBP14.9□□□□□ -0.02
TTC28-201ENST00000397906 CDCA8Q53HL2 280 aa14.89□□□□□ -0.03
TTC28-201ENST00000397906 MIER1Q8N108 512 aa14.87□□□□□ -0.03
TTC28-201ENST00000397906 CCNB3Q8WWL7 1395 aa14.87□□□□□ -0.03
TTC28-201ENST00000397906 GGT6Q6P531 493 aa14.87□□□□□ -0.03
TTC28-201ENST00000397906 SRPK2P78362 688 aaKnown RBP14.86□□□□□ -0.03
TTC28-201ENST00000397906 KANK1Q14678 1352 aa14.85□□□□□ -0.03
TTC28-201ENST00000397906 STK26Q9P289 416 aa14.85□□□□□ -0.03
TTC28-201ENST00000397906 OS9Q13438 667 aaPredicted RBP14.85□□□□□ -0.03
TTC28-201ENST00000397906 FRAT1Q92837 279 aaPredicted RBP14.84□□□□□ -0.03
TTC28-201ENST00000397906 GOLGA2Q08379 1002 aa14.84□□□□□ -0.03
TTC28-201ENST00000397906 NUDCQ9Y266 331 aa14.83□□□□□ -0.03
TTC28-201ENST00000397906 PAK3O75914 559 aaPredicted RBP14.83□□□□□ -0.04
TTC28-201ENST00000397906 DCAF11Q8TEB1 546 aa14.83□□□□□ -0.04
TTC28-201ENST00000397906 CASC1Q6TDU7 716 aa14.82□□□□□ -0.04
TTC28-201ENST00000397906 SIN3AQ96ST3 1273 aa14.82□□□□□ -0.04
TTC28-201ENST00000397906 NCLP19338 710 aaKnown RBP14.81□□□□□ -0.04
TTC28-201ENST00000397906 CUX2O14529 1486 aa14.8□□□□□ -0.04
TTC28-201ENST00000397906 CEP164Q9UPV0 1460 aa14.8□□□□□ -0.04
TTC28-201ENST00000397906 NAP1L2Q9ULW6 460 aaPredicted RBP14.79□□□□□ -0.04
TTC28-201ENST00000397906 CCDC9Q9Y3X0 531 aaKnown RBP14.78□□□□□ -0.04
TTC28-201ENST00000397906 ZNF330Q9Y3S2 320 aaPredicted RBP14.78□□□□□ -0.04
TTC28-201ENST00000397906 HDGFP51858 240 aaKnown RBP14.78□□□□□ -0.04
TTC28-201ENST00000397906 MYO15BQ96JP2 1530 aa14.78□□□□□ -0.04
TTC28-201ENST00000397906 ZRSR1Q15695 479 aaKnown RBP14.77□□□□□ -0.04
TTC28-201ENST00000397906 EEA1Q15075 1411 aa14.77□□□□□ -0.04
TTC28-201ENST00000397906 CECR2Q9BXF3 1484 aa14.74□□□□□ -0.05
TTC28-201ENST00000397906 CSB-PGBD3P0DP91 1061 aa14.74□□□□□ -0.05
TTC28-201ENST00000397906 BECN1Q14457 450 aa14.74□□□□□ -0.05
TTC28-201ENST00000397906 ISY1Q9ULR0 285 aaKnown RBP14.74□□□□□ -0.05
TTC28-201ENST00000397906 BAZ1AQ9NRL2 1556 aaPredicted RBP14.73□□□□□ -0.05
TTC28-201ENST00000397906 CARMIL1Q5VZK9 1371 aa14.73□□□□□ -0.05
TTC28-201ENST00000397906 FGD1P98174 961 aa14.72□□□□□ -0.05
TTC28-201ENST00000397906 NCBP3Q53F19 620 aaKnown RBP14.72□□□□□ -0.05
TTC28-201ENST00000397906 RGS3P49796 1198 aa14.72□□□□□ -0.05
TTC28-201ENST00000397906 NUTM2DQ5VT03 806 aaPredicted RBP14.72□□□□□ -0.05
TTC28-201ENST00000397906 FOXD1Q16676 465 aa14.71□□□□□ -0.05
TTC28-201ENST00000397906 KCNJ4P48050 445 aa14.71□□□□□ -0.06
TTC28-201ENST00000397906 TMF1P82094 1093 aa14.7□□□□□ -0.06
TTC28-201ENST00000397906 CLSTN1O94985 981 aa14.7□□□□□ -0.06
TTC28-201ENST00000397906 SUPT16HQ9Y5B9 1047 aaKnown RBP14.69□□□□□ -0.06
TTC28-201ENST00000397906 MORC1Q86VD1 984 aa14.68□□□□□ -0.06
TTC28-201ENST00000397906 GOLGA6L22H0YM25 854 aa14.68□□□□□ -0.06
TTC28-201ENST00000397906 RTF1Q92541 710 aaKnown RBP14.67□□□□□ -0.06
TTC28-201ENST00000397906 FHAD1B1AJZ9 1412 aa14.67□□□□□ -0.06
TTC28-201ENST00000397906 TNIKQ9UKE5 1360 aa14.65□□□□□ -0.06
TTC28-201ENST00000397906 PNNQ9H307 717 aaKnown RBP14.65□□□□□ -0.06
TTC28-201ENST00000397906 CARMIL2Q6F5E8 1435 aa14.65□□□□□ -0.06
TTC28-201ENST00000397906 TDRD9Q8NDG6 1382 aaKnown RBP14.64□□□□□ -0.07
TTC28-201ENST00000397906 ABCC8Q09428 1581 aa14.64□□□□□ -0.07
TTC28-201ENST00000397906 SOGA1O94964 1423 aa14.64□□□□□ -0.07
TTC28-201ENST00000397906 DDRGK1Q96HY6 314 aa14.63□□□□□ -0.07
TTC28-201ENST00000397906 APBB1O00213 710 aa14.63□□□□□ -0.07
TTC28-201ENST00000397906 NUTM2FA1L443 756 aa14.63□□□□□ -0.07
TTC28-201ENST00000397906 PLCB2Q00722 1185 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms