RNA–Protein interactions for RNA: ENST00000374736.7

ABCA1-202, Transcript of ATP binding cassette subfamily A member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ABCA1, Length 10,494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1-202ENST00000374736 GOLGA6L3A6NEY3 463 aa11.62□□□□□ -0.55
ABCA1-202ENST00000374736 GOLGA6L22H0YM25 854 aa11.62□□□□□ -0.55
ABCA1-202ENST00000374736 ARID3AQ99856 593 aa11.62□□□□□ -0.55
ABCA1-202ENST00000374736 SUPT5HO00267 1087 aaKnown RBP11.61□□□□□ -0.55
ABCA1-202ENST00000374736 BCCIPQ9P287 314 aaKnown RBP eCLIP11.61□□□□□ -0.55
ABCA1-202ENST00000374736 NOP58Q9Y2X3 529 aaKnown RBP11.6□□□□□ -0.55
ABCA1-202ENST00000374736 CLSTN1O94985 981 aa11.6□□□□□ -0.55
ABCA1-202ENST00000374736 RRP9O43818 475 aaKnown RBP11.6□□□□□ -0.55
ABCA1-202ENST00000374736 PSMD1Q99460 953 aa11.59□□□□□ -0.55
ABCA1-202ENST00000374736 GOLGA6L6A8MZA4 724 aa11.59□□□□□ -0.55
ABCA1-202ENST00000374736 DCAF1Q9Y4B6 1507 aa11.58□□□□□ -0.56
ABCA1-202ENST00000374736 AXDND1Q5T1B0 1012 aaPredicted RBP11.57□□□□□ -0.56
ABCA1-202ENST00000374736 CCDC136Q96JN2 1154 aa11.57□□□□□ -0.56
ABCA1-202ENST00000374736 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.56□□□□□ -0.56
ABCA1-202ENST00000374736 CHAF1AQ13111 956 aaPredicted RBP11.55□□□□□ -0.56
ABCA1-202ENST00000374736 UPF2Q9HAU5 1272 aaKnown RBP11.55□□□□□ -0.56
ABCA1-202ENST00000374736 GOLGA6L1Q8N7Z2 621 aa11.51□□□□□ -0.57
ABCA1-202ENST00000374736 TSPYL1Q9H0U9 437 aa11.51□□□□□ -0.57
ABCA1-202ENST00000374736 ZBTB7CA1YPR0 619 aa11.5□□□□□ -0.57
ABCA1-202ENST00000374736 PATL2C9JE40 543 aaKnown RBP11.49□□□□□ -0.57
ABCA1-202ENST00000374736 TAOK2Q9UL54 1235 aa11.49□□□□□ -0.57
ABCA1-202ENST00000374736 BECN1Q14457 450 aa11.48□□□□□ -0.57
ABCA1-202ENST00000374736 SSR1P43307 286 aaKnown RBP11.47□□□□□ -0.57
ABCA1-202ENST00000374736 SETQ01105 290 aaPredicted RBP11.46□□□□□ -0.57
ABCA1-202ENST00000374736 NEFHP12036 1026 aa11.46□□□□□ -0.58
ABCA1-202ENST00000374736 MSNP26038 577 aaKnown RBP11.45□□□□□ -0.58
ABCA1-202ENST00000374736 CCDC66A2RUB6 948 aa11.45□□□□□ -0.58
ABCA1-202ENST00000374736 CC2D1BQ5T0F9 858 aaKnown RBP11.45□□□□□ -0.58
ABCA1-202ENST00000374736 CLGNO14967 610 aa11.43□□□□□ -0.58
ABCA1-202ENST00000374736 TIMELESSQ9UNS1 1208 aa11.42□□□□□ -0.58
ABCA1-202ENST00000374736 FKBP8Q14318 412 aa11.42□□□□□ -0.58
ABCA1-202ENST00000374736 NOM1Q5C9Z4 860 aaKnown RBP11.41□□□□□ -0.58
ABCA1-202ENST00000374736 PLCD4Q9BRC7 762 aa11.41□□□□□ -0.58
ABCA1-202ENST00000374736 STK11IPQ8N1F8 1099 aa11.39□□□□□ -0.59
ABCA1-202ENST00000374736 PLPPR3Q6T4P5 718 aa11.39□□□□□ -0.59
ABCA1-202ENST00000374736 ANO8Q9HCE9 1232 aaPredicted RBP11.39□□□□□ -0.59
ABCA1-202ENST00000374736 ANP32CO43423 234 aa11.38□□□□□ -0.59
ABCA1-202ENST00000374736 FANCIQ9NVI1 1328 aa11.37□□□□□ -0.59
ABCA1-202ENST00000374736 ZNF526Q8TF50 670 aaPredicted RBP11.36□□□□□ -0.59
ABCA1-202ENST00000374736 TPM2P07951 284 aa11.36□□□□□ -0.59
ABCA1-202ENST00000374736 IRX3P78415 501 aaPredicted RBP11.33□□□□□ -0.6
ABCA1-202ENST00000374736 RBM19Q9Y4C8 960 aaKnown RBP11.33□□□□□ -0.6
ABCA1-202ENST00000374736 KLHL34Q8N239 644 aa11.31□□□□□ -0.6
ABCA1-202ENST00000374736 FGD1P98174 961 aa11.3□□□□□ -0.6
ABCA1-202ENST00000374736 SUPT16HQ9Y5B9 1047 aaKnown RBP11.29□□□□□ -0.6
ABCA1-202ENST00000374736 FAM43AQ8N2R8 423 aa11.29□□□□□ -0.6
ABCA1-202ENST00000374736 ZMYND15Q9H091 742 aa11.28□□□□□ -0.6
ABCA1-202ENST00000374736 PLEKHG5O94827 1062 aa11.28□□□□□ -0.6
ABCA1-202ENST00000374736 RBM28Q9NW13 759 aaKnown RBP11.27□□□□□ -0.61
ABCA1-202ENST00000374736 CWC15Q9P013 229 aaKnown RBP11.26□□□□□ -0.61
ABCA1-202ENST00000374736 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.26□□□□□ -0.61
ABCA1-202ENST00000374736 ZNF622Q969S3 477 aaKnown RBP eCLIP11.25□□□□□ -0.61
ABCA1-202ENST00000374736 BBXQ8WY36 941 aaPredicted RBP11.25□□□□□ -0.61
ABCA1-202ENST00000374736 NRDCO43847 1150 aa11.25□□□□□ -0.61
ABCA1-202ENST00000374736 PAIP2Q9BPZ3 127 aaKnown RBP11.23□□□□□ -0.61
ABCA1-202ENST00000374736 TCERG1O14776 1098 aaKnown RBP11.23□□□□□ -0.61
ABCA1-202ENST00000374736 SALL2Q9Y467 1007 aaPredicted RBP11.23□□□□□ -0.61
ABCA1-202ENST00000374736 GPS2Q13227 327 aa11.22□□□□□ -0.61
ABCA1-202ENST00000374736 CSPP1Q1MSJ5 1256 aa11.22□□□□□ -0.61
ABCA1-202ENST00000374736 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.22□□□□□ -0.61
ABCA1-202ENST00000374736 PES1O00541 588 aaKnown RBP11.22□□□□□ -0.61
ABCA1-202ENST00000374736 OS9Q13438 667 aaPredicted RBP11.22□□□□□ -0.61
ABCA1-202ENST00000374736 GSE1Q14687 1217 aa11.21□□□□□ -0.61
ABCA1-202ENST00000374736 DNAJC2Q99543 621 aaKnown RBP11.2□□□□□ -0.62
ABCA1-202ENST00000374736 ZNF771Q7L3S4 317 aaPredicted RBP11.2□□□□□ -0.62
ABCA1-202ENST00000374736 KIAA2012Q0VF49 1180 aa11.19□□□□□ -0.62
ABCA1-202ENST00000374736 TEX35Q5T0J7 233 aa11.19□□□□□ -0.62
ABCA1-202ENST00000374736 NAP1L2Q9ULW6 460 aaPredicted RBP11.19□□□□□ -0.62
ABCA1-202ENST00000374736 TSHZ2Q9NRE2 1034 aa11.19□□□□□ -0.62
ABCA1-202ENST00000374736 WWC1Q8IX03 1113 aa11.18□□□□□ -0.62
ABCA1-202ENST00000374736 SETSIPP0DME0 302 aa11.18□□□□□ -0.62
ABCA1-202ENST00000374736 PAXIP1Q6ZW49 1069 aaPredicted RBP11.18□□□□□ -0.62
ABCA1-202ENST00000374736 RBM10P98175 930 aaKnown RBP11.17□□□□□ -0.62
ABCA1-202ENST00000374736 PDCL3Q9H2J4 239 aa11.17□□□□□ -0.62
ABCA1-202ENST00000374736 USP8P40818 1118 aa11.17□□□□□ -0.62
ABCA1-202ENST00000374736 FTSJ3Q8IY81 847 aaKnown RBP11.17□□□□□ -0.62
ABCA1-202ENST00000374736 MNS1Q8NEH6 495 aa11.17□□□□□ -0.62
ABCA1-202ENST00000374736 MCCP23508 829 aa11.16□□□□□ -0.62
ABCA1-202ENST00000374736 HTATSF1O43719 755 aaKnown RBP11.16□□□□□ -0.62
ABCA1-202ENST00000374736 FAM193AP78312 1265 aa11.15□□□□□ -0.62
ABCA1-202ENST00000374736 CTR9Q6PD62 1173 aa11.15□□□□□ -0.62
ABCA1-202ENST00000374736 IPO9Q96P70 1041 aaKnown RBP11.15□□□□□ -0.62
ABCA1-202ENST00000374736 CHMP4AQ9BY43 222 aa11.15□□□□□ -0.62
ABCA1-202ENST00000374736 CASC1Q6TDU7 716 aa11.15□□□□□ -0.62
ABCA1-202ENST00000374736 HIRIP3Q9BW71 556 aaPredicted RBP11.14□□□□□ -0.63
ABCA1-202ENST00000374736 DEF6Q9H4E7 631 aa11.13□□□□□ -0.63
ABCA1-202ENST00000374736 IPO4Q8TEX9 1081 aaKnown RBP11.13□□□□□ -0.63
ABCA1-202ENST00000374736 TMX4Q9H1E5 349 aaPredicted RBP11.13□□□□□ -0.63
ABCA1-202ENST00000374736 PPP4R2Q9NY27 417 aa11.13□□□□□ -0.63
ABCA1-202ENST00000374736 KAT6BQ8WYB5 2073 aa11.12□□□□□ -0.63
ABCA1-202ENST00000374736 MRVI1Q9Y6F6 885 aa11.11□□□□□ -0.63
ABCA1-202ENST00000374736 GOLGA6L4A6NEF3 574 aa11.1□□□□□ -0.63
ABCA1-202ENST00000374736 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.1□□□□□ -0.63
ABCA1-202ENST00000374736 CALD1Q05682 793 aaKnown RBP11.1□□□□□ -0.63
ABCA1-202ENST00000374736 BCL11BQ9C0K0 894 aaPredicted RBP11.09□□□□□ -0.63
ABCA1-202ENST00000374736 ISY1Q9ULR0 285 aaKnown RBP11.09□□□□□ -0.63
ABCA1-202ENST00000374736 HMGN5P82970 282 aaKnown RBP11.08□□□□□ -0.64
ABCA1-202ENST00000374736 MYH16Q9H6N6 1097 aa11.07□□□□□ -0.64
ABCA1-202ENST00000374736 GPATCH11Q8N954 259 aa11.07□□□□□ -0.64
ABCA1-202ENST00000374736 KIF3AQ9Y496 699 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms