RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 CCDC136Q96JN2 1154 aa11.69□□□□□ -0.54
SYNE1-206ENST00000367253 PPARGC1BQ86YN6 1023 aaKnown RBP11.69□□□□□ -0.54
SYNE1-206ENST00000367253 ANP32AP39687 249 aaKnown RBP11.68□□□□□ -0.54
SYNE1-206ENST00000367253 ANP32BQ92688 251 aaKnown RBP11.68□□□□□ -0.54
SYNE1-206ENST00000367253 ZBTB7CA1YPR0 619 aa11.67□□□□□ -0.54
SYNE1-206ENST00000367253 MROH2BQ7Z745 1585 aa11.67□□□□□ -0.54
SYNE1-206ENST00000367253 BAZ1BQ9UIG0 1483 aaKnown RBP11.66□□□□□ -0.54
SYNE1-206ENST00000367253 VSIG10Q8N0Z9 540 aa11.66□□□□□ -0.54
SYNE1-206ENST00000367253 ARID3CA6NKF2 412 aa11.66□□□□□ -0.54
SYNE1-206ENST00000367253 CNGB1Q14028 1251 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-206ENST00000367253 HOMEZQ8IX15 550 aa11.65□□□□□ -0.55
SYNE1-206ENST00000367253 LMOD2Q6P5Q4 547 aa11.63□□□□□ -0.55
SYNE1-206ENST00000367253 NAP1L5Q96NT1 182 aaPredicted RBP11.62□□□□□ -0.55
SYNE1-206ENST00000367253 SMARCA2P51531 1590 aa11.62□□□□□ -0.55
SYNE1-206ENST00000367253 ACIN1Q9UKV3 1341 aaKnown RBP11.61□□□□□ -0.55
SYNE1-206ENST00000367253 NBR1Q14596 966 aa11.61□□□□□ -0.55
SYNE1-206ENST00000367253 KCNH8Q96L42 1107 aa11.61□□□□□ -0.55
SYNE1-206ENST00000367253 PTMSP20962 102 aa11.6□□□□□ -0.55
SYNE1-206ENST00000367253 PLEKHD1A6NEE1 506 aa11.6□□□□□ -0.55
SYNE1-206ENST00000367253 CCDC9Q9Y3X0 531 aaKnown RBP11.59□□□□□ -0.55
SYNE1-206ENST00000367253 CANXP27824 592 aaKnown RBP11.59□□□□□ -0.55
SYNE1-206ENST00000367253 MEX3CQ5U5Q3 659 aaKnown RBP11.59□□□□□ -0.55
SYNE1-206ENST00000367253 PLEKHG5O94827 1062 aa11.58□□□□□ -0.56
SYNE1-206ENST00000367253 ARXQ96QS3 562 aa11.57□□□□□ -0.56
SYNE1-206ENST00000367253 GOLGA2Q08379 1002 aa11.56□□□□□ -0.56
SYNE1-206ENST00000367253 APPP05067 770 aa11.56□□□□□ -0.56
SYNE1-206ENST00000367253 SENP3Q9H4L4 574 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-206ENST00000367253 SMARCA4P51532 1647 aa11.56□□□□□ -0.56
SYNE1-206ENST00000367253 SF3B2Q13435 895 aaKnown RBP11.56□□□□□ -0.56
SYNE1-206ENST00000367253 KRI1Q8N9T8 703 aaKnown RBP11.54□□□□□ -0.56
SYNE1-206ENST00000367253 DEKP35659 375 aaKnown RBP11.54□□□□□ -0.56
SYNE1-206ENST00000367253 ZNF526Q8TF50 670 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-206ENST00000367253 TRIM44Q96DX7 344 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-206ENST00000367253 TOP2AP11388 1531 aaKnown RBP11.52□□□□□ -0.57
SYNE1-206ENST00000367253 LOC105371045A0A1W2PR82 267 aa11.52□□□□□ -0.57
SYNE1-206ENST00000367253 ATAD2BQ9ULI0 1458 aa11.52□□□□□ -0.57
SYNE1-206ENST00000367253 PDIA4P13667 645 aaKnown RBP11.51□□□□□ -0.57
SYNE1-206ENST00000367253 P3H3Q8IVL6 736 aa11.51□□□□□ -0.57
SYNE1-206ENST00000367253 CALRP27797 417 aaKnown RBP11.49□□□□□ -0.57
SYNE1-206ENST00000367253 CSRNP3Q8WYN3 585 aa11.48□□□□□ -0.57
SYNE1-206ENST00000367253 WIZO95785 1651 aa11.48□□□□□ -0.57
SYNE1-206ENST00000367253 TPRNQ4KMQ1 711 aa11.47□□□□□ -0.57
SYNE1-206ENST00000367253 ERICH6BQ5W0A0 696 aa11.47□□□□□ -0.57
SYNE1-206ENST00000367253 ANP32CO43423 234 aa11.46□□□□□ -0.57
SYNE1-206ENST00000367253 MLECQ14165 292 aa11.46□□□□□ -0.57
SYNE1-206ENST00000367253 CCDC88BA6NC98 1476 aa11.46□□□□□ -0.57
SYNE1-206ENST00000367253 BICRAQ9NZM4 1560 aa11.44□□□□□ -0.58
SYNE1-206ENST00000367253 HMGB2P26583 209 aaKnown RBP11.44□□□□□ -0.58
SYNE1-206ENST00000367253 ARID3AQ99856 593 aa11.44□□□□□ -0.58
SYNE1-206ENST00000367253 EID1Q9Y6B2 187 aa11.43□□□□□ -0.58
SYNE1-206ENST00000367253 WRNQ14191 1432 aaPredicted RBP eCLIP11.43□□□□□ -0.58
SYNE1-206ENST00000367253 EEA1Q15075 1411 aa11.43□□□□□ -0.58
SYNE1-206ENST00000367253 OSCARQ8IYS5 282 aa11.42□□□□□ -0.58
SYNE1-206ENST00000367253 NCBP3Q53F19 620 aaKnown RBP11.42□□□□□ -0.58
SYNE1-206ENST00000367253 ANO8Q9HCE9 1232 aaPredicted RBP11.42□□□□□ -0.58
SYNE1-206ENST00000367253 NCAPD3P42695 1498 aa11.41□□□□□ -0.58
SYNE1-206ENST00000367253 HSP90AA1P07900 732 aaKnown RBP11.4□□□□□ -0.58
SYNE1-206ENST00000367253 EIF4G1Q04637 1599 aaKnown RBP11.39□□□□□ -0.59
SYNE1-206ENST00000367253 PATL2C9JE40 543 aaKnown RBP11.38□□□□□ -0.59
SYNE1-206ENST00000367253 G3V3G9 751 aa11.38□□□□□ -0.59
SYNE1-206ENST00000367253 DCAF8Q5TAQ9 597 aa11.38□□□□□ -0.59
SYNE1-206ENST00000367253 TNNT3P45378 269 aaPredicted RBP11.38□□□□□ -0.59
SYNE1-206ENST00000367253 POGKQ9P215 609 aa11.37□□□□□ -0.59
SYNE1-206ENST00000367253 UPF2Q9HAU5 1272 aaKnown RBP11.36□□□□□ -0.59
SYNE1-206ENST00000367253 WASHC2AQ641Q2 1341 aa11.35□□□□□ -0.59
SYNE1-206ENST00000367253 CSB-PGBD3P0DP91 1061 aa11.34□□□□□ -0.59
SYNE1-206ENST00000367253 KANK1Q14678 1352 aa11.33□□□□□ -0.6
SYNE1-206ENST00000367253 CADPSQ9ULU8 1353 aa11.33□□□□□ -0.6
SYNE1-206ENST00000367253 UNC13AQ9UPW8 1703 aa11.32□□□□□ -0.6
SYNE1-206ENST00000367253 FKBP8Q14318 412 aa11.31□□□□□ -0.6
SYNE1-206ENST00000367253 KLHL34Q8N239 644 aa11.3□□□□□ -0.6
SYNE1-206ENST00000367253 CYB5RLQ6IPT4 315 aa11.3□□□□□ -0.6
SYNE1-206ENST00000367253 MSH5O43196 834 aa11.3□□□□□ -0.6
SYNE1-206ENST00000367253 NEUROD1Q13562 356 aa11.29□□□□□ -0.6
SYNE1-206ENST00000367253 HMGXB3Q12766 1538 aa11.29□□□□□ -0.6
SYNE1-206ENST00000367253 PDS5BQ9NTI5 1447 aa11.28□□□□□ -0.6
SYNE1-206ENST00000367253 USP35Q9P2H5 1018 aa11.28□□□□□ -0.6
SYNE1-206ENST00000367253 CDCA8Q53HL2 280 aa11.28□□□□□ -0.6
SYNE1-206ENST00000367253 HSP90AA2PQ14568 343 aaPredicted RBP11.27□□□□□ -0.6
SYNE1-206ENST00000367253 MYH16Q9H6N6 1097 aa11.27□□□□□ -0.61
SYNE1-206ENST00000367253 DNTTIP2Q5QJE6 756 aaKnown RBP11.27□□□□□ -0.61
SYNE1-206ENST00000367253 CHMP4AQ9BY43 222 aa11.27□□□□□ -0.61
SYNE1-206ENST00000367253 KIF27Q86VH2 1401 aa11.26□□□□□ -0.61
SYNE1-206ENST00000367253 HMGB1P09429 215 aaKnown RBP11.26□□□□□ -0.61
SYNE1-206ENST00000367253 PEG3Q9GZU2 1588 aa11.25□□□□□ -0.61
SYNE1-206ENST00000367253 CFAP53Q96M91 514 aa11.25□□□□□ -0.61
SYNE1-206ENST00000367253 TAF7LQ5H9L4 462 aa11.24□□□□□ -0.61
SYNE1-206ENST00000367253 TIMELESSQ9UNS1 1208 aa11.24□□□□□ -0.61
SYNE1-206ENST00000367253 MTUS2Q5JR59 1369 aa11.23□□□□□ -0.61
SYNE1-206ENST00000367253 PAXIP1Q6ZW49 1069 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-206ENST00000367253 CARMIL2Q6F5E8 1435 aa11.22□□□□□ -0.61
SYNE1-206ENST00000367253 SRPK2P78362 688 aaKnown RBP11.21□□□□□ -0.61
SYNE1-206ENST00000367253 CWC22Q9HCG8 908 aaKnown RBP11.21□□□□□ -0.62
SYNE1-206ENST00000367253 GOLGA3Q08378 1498 aa11.2□□□□□ -0.62
SYNE1-206ENST00000367253 GTF2E1P29083 439 aaPredicted RBP11.2□□□□□ -0.62
SYNE1-206ENST00000367253 TMC1Q8TDI8 760 aa11.19□□□□□ -0.62
SYNE1-206ENST00000367253 CFDP1Q9UEE9 299 aaPredicted RBP11.19□□□□□ -0.62
SYNE1-206ENST00000367253 CEP164Q9UPV0 1460 aa11.19□□□□□ -0.62
SYNE1-206ENST00000367253 UBE2Q2Q8WVN8 375 aa11.19□□□□□ -0.62
SYNE1-206ENST00000367253 ABCC8Q09428 1581 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms