RNA–Protein interactions for RNA: ENST00000356083.7

COL27A1-201, Transcript of collagen type XXVII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL27A1, Length 7,790 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-201ENST00000356083 TRIM44Q96DX7 344 aaPredicted RBP22.95■■□□□ 1.26
COL27A1-201ENST00000356083 LMOD2Q6P5Q4 547 aa22.92■■□□□ 1.26
COL27A1-201ENST00000356083 PRM3Q9NNZ6 103 aa22.92■■□□□ 1.26
COL27A1-201ENST00000356083 PPM1GO15355 546 aaPredicted RBP22.89■■□□□ 1.26
COL27A1-201ENST00000356083 PTMAP06454 111 aaKnown RBP22.89■■□□□ 1.25
COL27A1-201ENST00000356083 IRX6P78412 446 aaPredicted RBP22.88■■□□□ 1.25
COL27A1-201ENST00000356083 AMER1Q5JTC6 1135 aaPredicted RBP22.87■■□□□ 1.25
COL27A1-201ENST00000356083 PLCB2Q00722 1185 aa22.86■■□□□ 1.25
COL27A1-201ENST00000356083 NAP1L2Q9ULW6 460 aaPredicted RBP22.86■■□□□ 1.25
COL27A1-201ENST00000356083 DDX10Q13206 875 aaKnown RBP22.84■■□□□ 1.25
COL27A1-201ENST00000356083 ISY1Q9ULR0 285 aaKnown RBP22.83■■□□□ 1.25
COL27A1-201ENST00000356083 ARID4BQ4LE39 1312 aaPredicted RBP22.83■■□□□ 1.25
COL27A1-201ENST00000356083 PPP1R15AO75807 674 aaPredicted RBP22.83■■□□□ 1.25
COL27A1-201ENST00000356083 TNNT2P45379 298 aaPredicted RBP22.79■■□□□ 1.24
COL27A1-201ENST00000356083 GOLGA2Q08379 1002 aa22.79■■□□□ 1.24
COL27A1-201ENST00000356083 CHIC2Q9UKJ5 165 aa22.79■■□□□ 1.24
COL27A1-201ENST00000356083 LAS1LQ9Y4W2 734 aaKnown RBP22.79■■□□□ 1.24
COL27A1-201ENST00000356083 TONSLQ96HA7 1378 aa22.79■■□□□ 1.24
COL27A1-201ENST00000356083 HIRIP3Q9BW71 556 aaPredicted RBP22.75■■□□□ 1.23
COL27A1-201ENST00000356083 FGD1P98174 961 aa22.7■■□□□ 1.22
COL27A1-201ENST00000356083 GOLGA6L22H0YM25 854 aa22.67■■□□□ 1.22
COL27A1-201ENST00000356083 ANO8Q9HCE9 1232 aaPredicted RBP22.64■■□□□ 1.21
COL27A1-201ENST00000356083 CASC1Q6TDU7 716 aa22.64■■□□□ 1.21
COL27A1-201ENST00000356083 BECN1Q14457 450 aa22.63■■□□□ 1.21
COL27A1-201ENST00000356083 PDE4CQ08493 712 aa22.61■■□□□ 1.21
COL27A1-201ENST00000356083 OS9Q13438 667 aaPredicted RBP22.6■■□□□ 1.21
COL27A1-201ENST00000356083 KCNJ4P48050 445 aa22.59■■□□□ 1.21
COL27A1-201ENST00000356083 MRS2Q9HD23 443 aa22.58■■□□□ 1.2
COL27A1-201ENST00000356083 FTSJ3Q8IY81 847 aaKnown RBP22.57■■□□□ 1.2
COL27A1-201ENST00000356083 ACIN1Q9UKV3 1341 aaKnown RBP22.55■■□□□ 1.2
COL27A1-201ENST00000356083 NEUROD2Q15784 382 aa22.54■■□□□ 1.2
COL27A1-201ENST00000356083 KCNH8Q96L42 1107 aa22.54■■□□□ 1.2
COL27A1-201ENST00000356083 ERICH6BQ5W0A0 696 aa22.53■■□□□ 1.2
COL27A1-201ENST00000356083 NAP1L5Q96NT1 182 aaPredicted RBP22.5■■□□□ 1.19
COL27A1-201ENST00000356083 RGL3Q3MIN7 710 aa22.5■■□□□ 1.19
COL27A1-201ENST00000356083 SOX12O15370 315 aa22.5■■□□□ 1.19
COL27A1-201ENST00000356083 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.5■■□□□ 1.19
COL27A1-201ENST00000356083 FBXO3Q9UK99 471 aa22.49■■□□□ 1.19
COL27A1-201ENST00000356083 RTN4Q9NQC3 1192 aaKnown RBP22.49■■□□□ 1.19
COL27A1-201ENST00000356083 TSPY4P0CV99 314 aa22.45■■□□□ 1.19
COL27A1-201ENST00000356083 TSPY10P0CW01 314 aa22.45■■□□□ 1.19
COL27A1-201ENST00000356083 GOLGA6L6A8MZA4 724 aa22.44■■□□□ 1.18
COL27A1-201ENST00000356083 KRI1Q8N9T8 703 aaKnown RBP22.43■■□□□ 1.18
COL27A1-201ENST00000356083 NOC3LQ8WTT2 800 aaKnown RBP22.43■■□□□ 1.18
COL27A1-201ENST00000356083 DRC7Q8IY82 874 aa22.4■■□□□ 1.18
COL27A1-201ENST00000356083 DDRGK1Q96HY6 314 aa22.39■■□□□ 1.18
COL27A1-201ENST00000356083 TRHP20396 242 aaPredicted RBP22.39■■□□□ 1.17
COL27A1-201ENST00000356083 HSP90AB1P08238 724 aaKnown RBP22.37■■□□□ 1.17
COL27A1-201ENST00000356083 GOLGA6L4A6NEF3 574 aa22.36■■□□□ 1.17
COL27A1-201ENST00000356083 GNL2Q13823 731 aaKnown RBP22.35■■□□□ 1.17
COL27A1-201ENST00000356083 ZNF330Q9Y3S2 320 aaPredicted RBP22.34■■□□□ 1.17
COL27A1-201ENST00000356083 PNNQ9H307 717 aaKnown RBP22.33■■□□□ 1.17
COL27A1-201ENST00000356083 FRAT1Q92837 279 aaPredicted RBP22.33■■□□□ 1.16
COL27A1-201ENST00000356083 ANP32EQ9BTT0 268 aa22.32■■□□□ 1.16
COL27A1-201ENST00000356083 CFAP53Q96M91 514 aa22.31■■□□□ 1.16
COL27A1-201ENST00000356083 KIAA2012Q0VF49 1180 aa22.31■■□□□ 1.16
COL27A1-201ENST00000356083 NRDCO43847 1150 aa22.31■■□□□ 1.16
COL27A1-201ENST00000356083 SPRYD3Q8NCJ5 442 aa22.29■■□□□ 1.16
COL27A1-201ENST00000356083 ARID3AQ99856 593 aa22.29■■□□□ 1.16
COL27A1-201ENST00000356083 RGS3P49796 1198 aa22.28■■□□□ 1.16
COL27A1-201ENST00000356083 WWC1Q8IX03 1113 aa22.28■■□□□ 1.16
COL27A1-201ENST00000356083 POGKQ9P215 609 aa22.27■■□□□ 1.16
COL27A1-201ENST00000356083 MAPK8IP3Q9UPT6 1336 aa22.26■■□□□ 1.15
COL27A1-201ENST00000356083 CHMP7Q8WUX9 453 aaPredicted RBP22.26■■□□□ 1.15
COL27A1-201ENST00000356083 U2SURPO15042 1029 aaKnown RBP22.26■■□□□ 1.15
COL27A1-201ENST00000356083 RRP7BPQ9NSQ0 103 aa22.24■■□□□ 1.15
COL27A1-201ENST00000356083 TMX4Q9H1E5 349 aaPredicted RBP22.22■■□□□ 1.15
COL27A1-201ENST00000356083 KNSTRNQ9Y448 316 aa22.22■■□□□ 1.15
COL27A1-201ENST00000356083 A0A0U1RQG5 324 aaPredicted RBP22.22■■□□□ 1.15
COL27A1-201ENST00000356083 CCDC9Q9Y3X0 531 aaKnown RBP22.22■■□□□ 1.15
COL27A1-201ENST00000356083 CHAF1AQ13111 956 aaPredicted RBP22.21■■□□□ 1.15
COL27A1-201ENST00000356083 G3V3G9 751 aa22.2■■□□□ 1.14
COL27A1-201ENST00000356083 DCAF8Q5TAQ9 597 aa22.2■■□□□ 1.14
COL27A1-201ENST00000356083 MLECQ14165 292 aa22.2■■□□□ 1.14
COL27A1-201ENST00000356083 CREBRFQ8IUR6 639 aa22.19■■□□□ 1.14
COL27A1-201ENST00000356083 APBB1O00213 710 aa22.17■■□□□ 1.14
COL27A1-201ENST00000356083 KAT6BQ8WYB5 2073 aa22.13■■□□□ 1.13
COL27A1-201ENST00000356083 L1TD1Q5T7N2 865 aaKnown RBP22.12■■□□□ 1.13
COL27A1-201ENST00000356083 PAK3O75914 559 aaPredicted RBP22.12■■□□□ 1.13
COL27A1-201ENST00000356083 VPS53Q5VIR6 699 aa22.12■■□□□ 1.13
COL27A1-201ENST00000356083 EIF4G2P78344 907 aaKnown RBP eCLIP22.11■■□□□ 1.13
COL27A1-201ENST00000356083 CSRNP3Q8WYN3 585 aa22.1■■□□□ 1.13
COL27A1-201ENST00000356083 CC2D1BQ5T0F9 858 aaKnown RBP22.09■■□□□ 1.13
COL27A1-201ENST00000356083 MSNP26038 577 aaKnown RBP22.08■■□□□ 1.13
COL27A1-201ENST00000356083 SAFB2Q14151 953 aaKnown RBP eCLIP22.08■■□□□ 1.12
COL27A1-201ENST00000356083 CHMP3Q9Y3E7 222 aa22.08■■□□□ 1.12
COL27A1-201ENST00000356083 MTUS2Q5JR59 1369 aa22.07■■□□□ 1.12
COL27A1-201ENST00000356083 NUDCQ9Y266 331 aa22.07■■□□□ 1.12
COL27A1-201ENST00000356083 CNKSR2Q8WXI2 1034 aa22.06■■□□□ 1.12
COL27A1-201ENST00000356083 SUPT16HQ9Y5B9 1047 aaKnown RBP22.04■■□□□ 1.12
COL27A1-201ENST00000356083 AEBP2Q6ZN18 517 aaPredicted RBP22.04■■□□□ 1.12
COL27A1-201ENST00000356083 SCRIBQ14160 1630 aa22.04■■□□□ 1.12
COL27A1-201ENST00000356083 HSP90B1P14625 803 aaKnown RBP22■■□□□ 1.11
COL27A1-201ENST00000356083 CSB-PGBD3P0DP91 1061 aa21.99■■□□□ 1.11
COL27A1-201ENST00000356083 MCCP23508 829 aa21.99■■□□□ 1.11
COL27A1-201ENST00000356083 RASSF8Q8NHQ8 419 aa21.99■■□□□ 1.11
COL27A1-201ENST00000356083 RTF1Q92541 710 aaKnown RBP21.98■■□□□ 1.11
COL27A1-201ENST00000356083 KIAA1211Q6ZU35 1233 aa21.97■■□□□ 1.11
COL27A1-201ENST00000356083 HSCBQ8IWL3 235 aa21.97■■□□□ 1.11
COL27A1-201ENST00000356083 TAF7LQ5H9L4 462 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms