RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 MYH16Q9H6N6 1097 aa16.82■□□□□ 0.28
SDC3-201ENST00000336798 MRS2Q9HD23 443 aa16.81■□□□□ 0.28
SDC3-201ENST00000336798 HAP1P54257 671 aaPredicted RBP16.78■□□□□ 0.28
SDC3-201ENST00000336798 PPP1R15AO75807 674 aaPredicted RBP16.76■□□□□ 0.27
SDC3-201ENST00000336798 NCLP19338 710 aaKnown RBP16.74■□□□□ 0.27
SDC3-201ENST00000336798 PPM1GO15355 546 aaPredicted RBP16.73■□□□□ 0.27
SDC3-201ENST00000336798 KCNH8Q96L42 1107 aa16.71■□□□□ 0.27
SDC3-201ENST00000336798 RTN4Q9NQC3 1192 aaKnown RBP16.71■□□□□ 0.27
SDC3-201ENST00000336798 TSPY4P0CV99 314 aa16.7■□□□□ 0.26
SDC3-201ENST00000336798 TSPY10P0CW01 314 aa16.7■□□□□ 0.26
SDC3-201ENST00000336798 RGL3Q3MIN7 710 aa16.67■□□□□ 0.26
SDC3-201ENST00000336798 ARID4BQ4LE39 1312 aaPredicted RBP16.66■□□□□ 0.26
SDC3-201ENST00000336798 LAS1LQ9Y4W2 734 aaKnown RBP16.66■□□□□ 0.26
SDC3-201ENST00000336798 RRP7BPQ9NSQ0 103 aa16.66■□□□□ 0.26
SDC3-201ENST00000336798 LMOD2Q6P5Q4 547 aa16.65■□□□□ 0.26
SDC3-201ENST00000336798 NCBP3Q53F19 620 aaKnown RBP16.64■□□□□ 0.25
SDC3-201ENST00000336798 TRIM44Q96DX7 344 aaPredicted RBP16.62■□□□□ 0.25
SDC3-201ENST00000336798 NPHP1O15259 732 aa16.62■□□□□ 0.25
SDC3-201ENST00000336798 NEUROD2Q15784 382 aa16.62■□□□□ 0.25
SDC3-201ENST00000336798 CHMP7Q8WUX9 453 aaPredicted RBP16.6■□□□□ 0.25
SDC3-201ENST00000336798 PTMAP06454 111 aaKnown RBP16.59■□□□□ 0.25
SDC3-201ENST00000336798 ZRSR1Q15695 479 aaKnown RBP16.59■□□□□ 0.25
SDC3-201ENST00000336798 MIER1Q8N108 512 aa16.58■□□□□ 0.25
SDC3-201ENST00000336798 BECN1Q14457 450 aa16.57■□□□□ 0.24
SDC3-201ENST00000336798 MTUS2Q5JR59 1369 aa16.56■□□□□ 0.24
SDC3-201ENST00000336798 DNTTIP2Q5QJE6 756 aaKnown RBP16.56■□□□□ 0.24
SDC3-201ENST00000336798 TNNT2P45379 298 aaPredicted RBP16.55■□□□□ 0.24
SDC3-201ENST00000336798 PLCB2Q00722 1185 aa16.55■□□□□ 0.24
SDC3-201ENST00000336798 GOLGA6L22H0YM25 854 aa16.53■□□□□ 0.24
SDC3-201ENST00000336798 FTSJ3Q8IY81 847 aaKnown RBP16.52■□□□□ 0.24
SDC3-201ENST00000336798 NAP1L2Q9ULW6 460 aaPredicted RBP16.52■□□□□ 0.23
SDC3-201ENST00000336798 EIF4G2P78344 907 aaKnown RBP eCLIP16.52■□□□□ 0.23
SDC3-201ENST00000336798 CASC1Q6TDU7 716 aa16.49■□□□□ 0.23
SDC3-201ENST00000336798 DDRGK1Q96HY6 314 aa16.49■□□□□ 0.23
SDC3-201ENST00000336798 SCRIBQ14160 1630 aa16.48■□□□□ 0.23
SDC3-201ENST00000336798 CFAP53Q96M91 514 aa16.47■□□□□ 0.23
SDC3-201ENST00000336798 AMER1Q5JTC6 1135 aaPredicted RBP16.47■□□□□ 0.23
SDC3-201ENST00000336798 FRAT1Q92837 279 aaPredicted RBP16.47■□□□□ 0.23
SDC3-201ENST00000336798 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.47■□□□□ 0.23
SDC3-201ENST00000336798 CLSTN1O94985 981 aa16.46■□□□□ 0.23
SDC3-201ENST00000336798 SOX12O15370 315 aa16.46■□□□□ 0.23
SDC3-201ENST00000336798 OS9Q13438 667 aaPredicted RBP16.46■□□□□ 0.22
SDC3-201ENST00000336798 RGS3P49796 1198 aa16.45■□□□□ 0.22
SDC3-201ENST00000336798 KNSTRNQ9Y448 316 aa16.45■□□□□ 0.22
SDC3-201ENST00000336798 FGD1P98174 961 aa16.43■□□□□ 0.22
SDC3-201ENST00000336798 NAP1L5Q96NT1 182 aaPredicted RBP16.42■□□□□ 0.22
SDC3-201ENST00000336798 MAPK8IP3Q9UPT6 1336 aa16.42■□□□□ 0.22
SDC3-201ENST00000336798 SUPT16HQ9Y5B9 1047 aaKnown RBP16.41■□□□□ 0.22
SDC3-201ENST00000336798 POGKQ9P215 609 aa16.4■□□□□ 0.22
SDC3-201ENST00000336798 CC2D1BQ5T0F9 858 aaKnown RBP16.4■□□□□ 0.22
SDC3-201ENST00000336798 GOLGA2Q08379 1002 aa16.4■□□□□ 0.22
SDC3-201ENST00000336798 ISY1Q9ULR0 285 aaKnown RBP16.39■□□□□ 0.21
SDC3-201ENST00000336798 U2SURPO15042 1029 aaKnown RBP16.39■□□□□ 0.21
SDC3-201ENST00000336798 KCNJ4P48050 445 aa16.38■□□□□ 0.21
SDC3-201ENST00000336798 CARD11Q9BXL7 1154 aa16.37■□□□□ 0.21
SDC3-201ENST00000336798 PLEKHD1A6NEE1 506 aa16.36■□□□□ 0.21
SDC3-201ENST00000336798 SPRYD3Q8NCJ5 442 aa16.36■□□□□ 0.21
SDC3-201ENST00000336798 HSP90AB1P08238 724 aaKnown RBP16.35■□□□□ 0.21
SDC3-201ENST00000336798 DEKP35659 375 aaKnown RBP16.34■□□□□ 0.21
SDC3-201ENST00000336798 MLECQ14165 292 aa16.33■□□□□ 0.21
SDC3-201ENST00000336798 SAFB2Q14151 953 aaKnown RBP eCLIP16.3■□□□□ 0.2
SDC3-201ENST00000336798 NUDCQ9Y266 331 aa16.29■□□□□ 0.2
SDC3-201ENST00000336798 TRHP20396 242 aaPredicted RBP16.28■□□□□ 0.2
SDC3-201ENST00000336798 CFDP1Q9UEE9 299 aaPredicted RBP16.28■□□□□ 0.2
SDC3-201ENST00000336798 PRKCSHP14314 528 aaPredicted RBP16.28■□□□□ 0.2
SDC3-201ENST00000336798 APBB1O00213 710 aa16.27■□□□□ 0.19
SDC3-201ENST00000336798 CDCA8Q53HL2 280 aa16.26■□□□□ 0.19
SDC3-201ENST00000336798 ERICH6BQ5W0A0 696 aa16.25■□□□□ 0.19
SDC3-201ENST00000336798 ZCCHC6Q5VYS8 1495 aaKnown RBP16.25■□□□□ 0.19
SDC3-201ENST00000336798 CLIP1P30622 1438 aa16.25■□□□□ 0.19
SDC3-201ENST00000336798 GOLGA6L6A8MZA4 724 aa16.25■□□□□ 0.19
SDC3-201ENST00000336798 ZNF330Q9Y3S2 320 aaPredicted RBP16.24■□□□□ 0.19
SDC3-201ENST00000336798 GOLGA6L4A6NEF3 574 aa16.24■□□□□ 0.19
SDC3-201ENST00000336798 SIN3AQ96ST3 1273 aa16.23■□□□□ 0.19
SDC3-201ENST00000336798 B4GALNT3Q6L9W6 998 aa16.21■□□□□ 0.19
SDC3-201ENST00000336798 DRC7Q8IY82 874 aa16.21■□□□□ 0.19
SDC3-201ENST00000336798 SRPK2P78362 688 aaKnown RBP16.19■□□□□ 0.18
SDC3-201ENST00000336798 PDE4CQ08493 712 aa16.18■□□□□ 0.18
SDC3-201ENST00000336798 GNL2Q13823 731 aaKnown RBP16.17■□□□□ 0.18
SDC3-201ENST00000336798 STK26Q9P289 416 aa16.17■□□□□ 0.18
SDC3-201ENST00000336798 ARID3AQ99856 593 aa16.16■□□□□ 0.18
SDC3-201ENST00000336798 DCAF1Q9Y4B6 1507 aa16.16■□□□□ 0.18
SDC3-201ENST00000336798 RSF1Q96T23 1441 aaPredicted RBP16.16■□□□□ 0.18
SDC3-201ENST00000336798 PAK3O75914 559 aaPredicted RBP16.15■□□□□ 0.18
SDC3-201ENST00000336798 HSCBQ8IWL3 235 aa16.15■□□□□ 0.18
SDC3-201ENST00000336798 NOP58Q9Y2X3 529 aaKnown RBP16.15■□□□□ 0.18
SDC3-201ENST00000336798 DCAF11Q8TEB1 546 aa16.13■□□□□ 0.17
SDC3-201ENST00000336798 ANO8Q9HCE9 1232 aaPredicted RBP16.13■□□□□ 0.17
SDC3-201ENST00000336798 PRM3Q9NNZ6 103 aa16.13■□□□□ 0.17
SDC3-201ENST00000336798 NRDCO43847 1150 aa16.12■□□□□ 0.17
SDC3-201ENST00000336798 PPP4R2Q9NY27 417 aa16.12■□□□□ 0.17
SDC3-201ENST00000336798 RTF1Q92541 710 aaKnown RBP16.1■□□□□ 0.17
SDC3-201ENST00000336798 MORC1Q86VD1 984 aa16.09■□□□□ 0.17
SDC3-201ENST00000336798 CSB-PGBD3P0DP91 1061 aa16.09■□□□□ 0.17
SDC3-201ENST00000336798 CCDC9Q9Y3X0 531 aaKnown RBP16.09■□□□□ 0.17
SDC3-201ENST00000336798 MCCP23508 829 aa16.08■□□□□ 0.17
SDC3-201ENST00000336798 CHAF1AQ13111 956 aaPredicted RBP16.08■□□□□ 0.17
SDC3-201ENST00000336798 CHMP4BQ9H444 224 aaKnown RBP16.08■□□□□ 0.16
SDC3-201ENST00000336798 MSNP26038 577 aaKnown RBP16.07■□□□□ 0.16
SDC3-201ENST00000336798 PNNQ9H307 717 aaKnown RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms