RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 PPM1GO15355 546 aaPredicted RBP11.69□□□□□ -0.54
TDP1-201ENST00000335725 BRD2P25440 801 aaKnown RBP11.69□□□□□ -0.54
TDP1-201ENST00000335725 HOMEZQ8IX15 550 aa11.68□□□□□ -0.54
TDP1-201ENST00000335725 NAP1L2Q9ULW6 460 aaPredicted RBP11.66□□□□□ -0.54
TDP1-201ENST00000335725 CALD1Q05682 793 aaKnown RBP11.66□□□□□ -0.54
TDP1-201ENST00000335725 GSE1Q14687 1217 aa11.66□□□□□ -0.54
TDP1-201ENST00000335725 NCLP19338 710 aaKnown RBP11.63□□□□□ -0.55
TDP1-201ENST00000335725 PAXIP1Q6ZW49 1069 aaPredicted RBP11.63□□□□□ -0.55
TDP1-201ENST00000335725 PPP4R2Q9NY27 417 aa11.63□□□□□ -0.55
TDP1-201ENST00000335725 BBXQ8WY36 941 aaPredicted RBP11.61□□□□□ -0.55
TDP1-201ENST00000335725 CENPJQ9HC77 1338 aaPredicted RBP11.61□□□□□ -0.55
TDP1-201ENST00000335725 IPO4Q8TEX9 1081 aaKnown RBP11.6□□□□□ -0.55
TDP1-201ENST00000335725 CANXP27824 592 aaKnown RBP11.59□□□□□ -0.55
TDP1-201ENST00000335725 CNGB1Q14028 1251 aaPredicted RBP11.58□□□□□ -0.56
TDP1-201ENST00000335725 PRDM4Q9UKN5 801 aa11.56□□□□□ -0.56
TDP1-201ENST00000335725 CHMP4AQ9BY43 222 aa11.54□□□□□ -0.56
TDP1-201ENST00000335725 PDCL3Q9H2J4 239 aa11.53□□□□□ -0.56
TDP1-201ENST00000335725 PNNQ9H307 717 aaKnown RBP11.52□□□□□ -0.57
TDP1-201ENST00000335725 CHMP4BQ9H444 224 aaKnown RBP11.52□□□□□ -0.57
TDP1-201ENST00000335725 PLPPR3Q6T4P5 718 aa11.51□□□□□ -0.57
TDP1-201ENST00000335725 DHX37Q8IY37 1157 aaKnown RBP11.5□□□□□ -0.57
TDP1-201ENST00000335725 RGS3P49796 1198 aa11.49□□□□□ -0.57
TDP1-201ENST00000335725 CCER2I3L3R5 266 aa11.49□□□□□ -0.57
TDP1-201ENST00000335725 GTF2E1P29083 439 aaPredicted RBP11.49□□□□□ -0.57
TDP1-201ENST00000335725 KCNH8Q96L42 1107 aa11.49□□□□□ -0.57
TDP1-201ENST00000335725 TULP1O00294 542 aaPredicted RBP11.47□□□□□ -0.57
TDP1-201ENST00000335725 LAS1LQ9Y4W2 734 aaKnown RBP11.47□□□□□ -0.57
TDP1-201ENST00000335725 FRAT1Q92837 279 aaPredicted RBP11.47□□□□□ -0.57
TDP1-201ENST00000335725 EEA1Q15075 1411 aa11.46□□□□□ -0.57
TDP1-201ENST00000335725 STAC3Q96MF2 364 aa11.46□□□□□ -0.58
TDP1-201ENST00000335725 NPM2Q86SE8 214 aaKnown RBP11.45□□□□□ -0.58
TDP1-201ENST00000335725 FTSJ3Q8IY81 847 aaKnown RBP11.45□□□□□ -0.58
TDP1-201ENST00000335725 BCCIPQ9P287 314 aaKnown RBP eCLIP11.45□□□□□ -0.58
TDP1-201ENST00000335725 WRNQ14191 1432 aaPredicted RBP eCLIP11.45□□□□□ -0.58
TDP1-201ENST00000335725 TRIM52Q96A61 297 aa11.44□□□□□ -0.58
TDP1-201ENST00000335725 TPM2P07951 284 aa11.43□□□□□ -0.58
TDP1-201ENST00000335725 TEX2Q8IWB9 1127 aa11.43□□□□□ -0.58
TDP1-201ENST00000335725 ARID4BQ4LE39 1312 aaPredicted RBP11.42□□□□□ -0.58
TDP1-201ENST00000335725 EHMT2Q96KQ7 1210 aa11.42□□□□□ -0.58
TDP1-201ENST00000335725 CLCN1P35523 988 aa11.42□□□□□ -0.58
TDP1-201ENST00000335725 RRAGDQ9NQL2 400 aaPredicted RBP11.41□□□□□ -0.58
TDP1-201ENST00000335725 L1TD1Q5T7N2 865 aaKnown RBP11.4□□□□□ -0.58
TDP1-201ENST00000335725 MAP7D2Q96T17 732 aa11.4□□□□□ -0.58
TDP1-201ENST00000335725 IRX6P78412 446 aaPredicted RBP11.39□□□□□ -0.59
TDP1-201ENST00000335725 SMAP1Q8IYB5 467 aaPredicted RBP11.39□□□□□ -0.59
TDP1-201ENST00000335725 DDRGK1Q96HY6 314 aa11.39□□□□□ -0.59
TDP1-201ENST00000335725 SAMD1Q6SPF0 538 aaPredicted RBP11.39□□□□□ -0.59
TDP1-201ENST00000335725 ZFP91Q96JP5 570 aaPredicted RBP11.39□□□□□ -0.59
TDP1-201ENST00000335725 HAP1P54257 671 aaPredicted RBP11.37□□□□□ -0.59
TDP1-201ENST00000335725 B4GALNT3Q6L9W6 998 aa11.37□□□□□ -0.59
TDP1-201ENST00000335725 NFKBIBQ15653 356 aa11.37□□□□□ -0.59
TDP1-201ENST00000335725 TNNT2P45379 298 aaPredicted RBP11.36□□□□□ -0.59
TDP1-201ENST00000335725 ANP32CO43423 234 aa11.35□□□□□ -0.59
TDP1-201ENST00000335725 CHRM1P11229 460 aaPredicted RBP11.35□□□□□ -0.59
TDP1-201ENST00000335725 HSP90B1P14625 803 aaKnown RBP11.35□□□□□ -0.59
TDP1-201ENST00000335725 DCAF11Q8TEB1 546 aa11.35□□□□□ -0.59
TDP1-201ENST00000335725 DCAF8L2P0C7V8 631 aa11.33□□□□□ -0.6
TDP1-201ENST00000335725 UTP14CQ5TAP6 766 aaKnown RBP11.32□□□□□ -0.6
TDP1-201ENST00000335725 C14orf37Q86TY3 774 aa11.32□□□□□ -0.6
TDP1-201ENST00000335725 CNKSR2Q8WXI2 1034 aa11.32□□□□□ -0.6
TDP1-201ENST00000335725 VGFO15240 615 aaPredicted RBP11.31□□□□□ -0.6
TDP1-201ENST00000335725 SECISBP2LQ93073 1101 aaKnown RBP11.3□□□□□ -0.6
TDP1-201ENST00000335725 ANP32BQ92688 251 aaKnown RBP11.3□□□□□ -0.6
TDP1-201ENST00000335725 HNRNPUL2Q1KMD3 747 aaKnown RBP11.28□□□□□ -0.6
TDP1-201ENST00000335725 MTERF4Q7Z6M4 381 aaKnown RBP11.28□□□□□ -0.6
TDP1-201ENST00000335725 CDK11BP21127 795 aaKnown RBP11.27□□□□□ -0.6
TDP1-201ENST00000335725 HNRNPUQ00839 825 aaKnown RBP eCLIP11.26□□□□□ -0.61
TDP1-201ENST00000335725 TAF3Q5VWG9 929 aa11.26□□□□□ -0.61
TDP1-201ENST00000335725 DDX10Q13206 875 aaKnown RBP11.25□□□□□ -0.61
TDP1-201ENST00000335725 TMEM51Q9NW97 253 aa11.25□□□□□ -0.61
TDP1-201ENST00000335725 TCERG1O14776 1098 aaKnown RBP11.24□□□□□ -0.61
TDP1-201ENST00000335725 FBXO3Q9UK99 471 aa11.24□□□□□ -0.61
TDP1-201ENST00000335725 PLCD3Q8N3E9 789 aa11.23□□□□□ -0.61
TDP1-201ENST00000335725 KIF20AO95235 890 aa11.23□□□□□ -0.61
TDP1-201ENST00000335725 ZNF830Q96NB3 372 aaPredicted RBP11.23□□□□□ -0.61
TDP1-201ENST00000335725 ZHX1Q9UKY1 873 aaPredicted RBP11.23□□□□□ -0.61
TDP1-201ENST00000335725 PPP4R3BQ5MIZ7 849 aa11.22□□□□□ -0.61
TDP1-201ENST00000335725 DMTNQ08495 405 aa11.22□□□□□ -0.61
TDP1-201ENST00000335725 IRX3P78415 501 aaPredicted RBP11.21□□□□□ -0.61
TDP1-201ENST00000335725 TRIM44Q96DX7 344 aaPredicted RBP11.21□□□□□ -0.61
TDP1-201ENST00000335725 NACADO15069 1562 aa11.2□□□□□ -0.62
TDP1-201ENST00000335725 MS4A1P11836 297 aa11.2□□□□□ -0.62
TDP1-201ENST00000335725 TERF1P54274 439 aa11.2□□□□□ -0.62
TDP1-201ENST00000335725 RNF216Q9NWF9 866 aaPredicted RBP11.2□□□□□ -0.62
TDP1-201ENST00000335725 AMER1Q5JTC6 1135 aaPredicted RBP11.19□□□□□ -0.62
TDP1-201ENST00000335725 PPP1R15AO75807 674 aaPredicted RBP11.19□□□□□ -0.62
TDP1-201ENST00000335725 DHX57Q6P158 1386 aaKnown RBP11.18□□□□□ -0.62
TDP1-201ENST00000335725 CLGNO14967 610 aa11.18□□□□□ -0.62
TDP1-201ENST00000335725 PTMSP20962 102 aa11.17□□□□□ -0.62
TDP1-201ENST00000335725 PDE4AP27815 886 aa11.17□□□□□ -0.62
TDP1-201ENST00000335725 GTPBP4Q9BZE4 634 aaKnown RBP11.17□□□□□ -0.62
TDP1-201ENST00000335725 RGS22Q8NE09 1264 aa11.17□□□□□ -0.62
TDP1-201ENST00000335725 NCAPD3P42695 1498 aa11.16□□□□□ -0.62
TDP1-201ENST00000335725 LETM1O95202 739 aaPredicted RBP11.16□□□□□ -0.62
TDP1-201ENST00000335725 DNTTIP2Q5QJE6 756 aaKnown RBP11.16□□□□□ -0.62
TDP1-201ENST00000335725 ESPNB1AK53 854 aa11.15□□□□□ -0.62
TDP1-201ENST00000335725 BACH2Q9BYV9 841 aa11.15□□□□□ -0.62
TDP1-201ENST00000335725 CEP162Q5TB80 1403 aa11.14□□□□□ -0.63
TDP1-201ENST00000335725 VGLL3A8MV65 326 aa11.14□□□□□ -0.63
TDP1-201ENST00000335725 CNPY4Q8N129 248 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms