RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 FKBP8Q14318 412 aa10.59□□□□□ -0.71
SCN9A-201ENST00000303354 LAS1LQ9Y4W2 734 aaKnown RBP10.58□□□□□ -0.71
SCN9A-201ENST00000303354 NCBP3Q53F19 620 aaKnown RBP10.58□□□□□ -0.72
SCN9A-201ENST00000303354 TSPY4P0CV99 314 aa10.57□□□□□ -0.72
SCN9A-201ENST00000303354 TSPY10P0CW01 314 aa10.57□□□□□ -0.72
SCN9A-201ENST00000303354 TNNT2P45379 298 aaPredicted RBP10.57□□□□□ -0.72
SCN9A-201ENST00000303354 WDR43Q15061 677 aaKnown RBP eCLIP10.56□□□□□ -0.72
SCN9A-201ENST00000303354 TONSLQ96HA7 1378 aa10.56□□□□□ -0.72
SCN9A-201ENST00000303354 AMER1Q5JTC6 1135 aaPredicted RBP10.54□□□□□ -0.72
SCN9A-201ENST00000303354 NEUROD2Q15784 382 aa10.54□□□□□ -0.72
SCN9A-201ENST00000303354 SAFB2Q14151 953 aaKnown RBP eCLIP10.52□□□□□ -0.73
SCN9A-201ENST00000303354 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.51□□□□□ -0.73
SCN9A-201ENST00000303354 NBR1Q14596 966 aa10.48□□□□□ -0.73
SCN9A-201ENST00000303354 ANP32AP39687 249 aaKnown RBP10.47□□□□□ -0.73
SCN9A-201ENST00000303354 MTUS2Q5JR59 1369 aa10.44□□□□□ -0.74
SCN9A-201ENST00000303354 CCDC9Q9Y3X0 531 aaKnown RBP10.44□□□□□ -0.74
SCN9A-201ENST00000303354 PLEKHD1A6NEE1 506 aa10.43□□□□□ -0.74
SCN9A-201ENST00000303354 MRS2Q9HD23 443 aa10.43□□□□□ -0.74
SCN9A-201ENST00000303354 POGKQ9P215 609 aa10.42□□□□□ -0.74
SCN9A-201ENST00000303354 ERCC6Q03468 1493 aa10.42□□□□□ -0.74
SCN9A-201ENST00000303354 STK26Q9P289 416 aa10.42□□□□□ -0.74
SCN9A-201ENST00000303354 EIF5BO60841 1220 aaKnown RBP10.42□□□□□ -0.74
SCN9A-201ENST00000303354 ZNF330Q9Y3S2 320 aaPredicted RBP10.41□□□□□ -0.74
SCN9A-201ENST00000303354 NUTM2DQ5VT03 806 aaPredicted RBP10.41□□□□□ -0.74
SCN9A-201ENST00000303354 PAK3O75914 559 aaPredicted RBP10.4□□□□□ -0.75
SCN9A-201ENST00000303354 CC2D1BQ5T0F9 858 aaKnown RBP10.4□□□□□ -0.75
SCN9A-201ENST00000303354 UPF2Q9HAU5 1272 aaKnown RBP10.39□□□□□ -0.75
SCN9A-201ENST00000303354 CCDC136Q96JN2 1154 aa10.39□□□□□ -0.75
SCN9A-201ENST00000303354 GGT6Q6P531 493 aa10.38□□□□□ -0.75
SCN9A-201ENST00000303354 ISY1Q9ULR0 285 aaKnown RBP10.37□□□□□ -0.75
SCN9A-201ENST00000303354 U2SURPO15042 1029 aaKnown RBP10.37□□□□□ -0.75
SCN9A-201ENST00000303354 NAP1L2Q9ULW6 460 aaPredicted RBP10.37□□□□□ -0.75
SCN9A-201ENST00000303354 MYH16Q9H6N6 1097 aa10.37□□□□□ -0.75
SCN9A-201ENST00000303354 CDK11BP21127 795 aaKnown RBP10.36□□□□□ -0.75
SCN9A-201ENST00000303354 NUTM2FA1L443 756 aa10.36□□□□□ -0.75
SCN9A-201ENST00000303354 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.35□□□□□ -0.75
SCN9A-201ENST00000303354 NCLP19338 710 aaKnown RBP10.35□□□□□ -0.75
SCN9A-201ENST00000303354 ANP32BQ92688 251 aaKnown RBP10.35□□□□□ -0.75
SCN9A-201ENST00000303354 CFDP1Q9UEE9 299 aaPredicted RBP10.35□□□□□ -0.75
SCN9A-201ENST00000303354 AEBP2Q6ZN18 517 aaPredicted RBP10.34□□□□□ -0.75
SCN9A-201ENST00000303354 FRAT1Q92837 279 aaPredicted RBP10.33□□□□□ -0.76
SCN9A-201ENST00000303354 CLSTN1O94985 981 aa10.32□□□□□ -0.76
SCN9A-201ENST00000303354 SIN3AQ96ST3 1273 aa10.31□□□□□ -0.76
SCN9A-201ENST00000303354 CARD11Q9BXL7 1154 aa10.31□□□□□ -0.76
SCN9A-201ENST00000303354 ANO8Q9HCE9 1232 aaPredicted RBP10.3□□□□□ -0.76
SCN9A-201ENST00000303354 OS9Q13438 667 aaPredicted RBP10.3□□□□□ -0.76
SCN9A-201ENST00000303354 SRPK2P78362 688 aaKnown RBP10.3□□□□□ -0.76
SCN9A-201ENST00000303354 GOLGA2Q08379 1002 aa10.3□□□□□ -0.76
SCN9A-201ENST00000303354 CSB-PGBD3P0DP91 1061 aa10.29□□□□□ -0.76
SCN9A-201ENST00000303354 ACIN1Q9UKV3 1341 aaKnown RBP10.29□□□□□ -0.76
SCN9A-201ENST00000303354 APBB1O00213 710 aa10.28□□□□□ -0.76
SCN9A-201ENST00000303354 FOXD1Q16676 465 aa10.28□□□□□ -0.76
SCN9A-201ENST00000303354 MIER1Q8N108 512 aa10.28□□□□□ -0.76
SCN9A-201ENST00000303354 EIF4G2P78344 907 aaKnown RBP eCLIP10.27□□□□□ -0.76
SCN9A-201ENST00000303354 EIF4G1Q04637 1599 aaKnown RBP10.27□□□□□ -0.77
SCN9A-201ENST00000303354 KNSTRNQ9Y448 316 aa10.27□□□□□ -0.77
SCN9A-201ENST00000303354 ZCCHC6Q5VYS8 1495 aaKnown RBP10.26□□□□□ -0.77
SCN9A-201ENST00000303354 FTSJ3Q8IY81 847 aaKnown RBP10.25□□□□□ -0.77
SCN9A-201ENST00000303354 MAPK8IP3Q9UPT6 1336 aa10.25□□□□□ -0.77
SCN9A-201ENST00000303354 PLCB2Q00722 1185 aa10.25□□□□□ -0.77
SCN9A-201ENST00000303354 PHF23Q9BUL5 403 aaPredicted RBP10.24□□□□□ -0.77
SCN9A-201ENST00000303354 SPRYD3Q8NCJ5 442 aa10.24□□□□□ -0.77
SCN9A-201ENST00000303354 CFAP53Q96M91 514 aa10.24□□□□□ -0.77
SCN9A-201ENST00000303354 DCAF11Q8TEB1 546 aa10.24□□□□□ -0.77
SCN9A-201ENST00000303354 KLHL34Q8N239 644 aa10.23□□□□□ -0.77
SCN9A-201ENST00000303354 LTV1Q96GA3 475 aaPredicted RBP10.23□□□□□ -0.77
SCN9A-201ENST00000303354 MSH5O43196 834 aa10.22□□□□□ -0.77
SCN9A-201ENST00000303354 RGS3P49796 1198 aa10.22□□□□□ -0.77
SCN9A-201ENST00000303354 FGD1P98174 961 aa10.19□□□□□ -0.78
SCN9A-201ENST00000303354 CYB5RLQ6IPT4 315 aa10.19□□□□□ -0.78
SCN9A-201ENST00000303354 SUPT16HQ9Y5B9 1047 aaKnown RBP10.18□□□□□ -0.78
SCN9A-201ENST00000303354 KCNJ4P48050 445 aa10.18□□□□□ -0.78
SCN9A-201ENST00000303354 CHMP3Q9Y3E7 222 aa10.17□□□□□ -0.78
SCN9A-201ENST00000303354 PDE4CQ08493 712 aa10.17□□□□□ -0.78
SCN9A-201ENST00000303354 CLIP1P30622 1438 aa10.15□□□□□ -0.78
SCN9A-201ENST00000303354 NUDCQ9Y266 331 aa10.15□□□□□ -0.78
SCN9A-201ENST00000303354 G3V3G9 751 aa10.15□□□□□ -0.79
SCN9A-201ENST00000303354 DCAF8Q5TAQ9 597 aa10.15□□□□□ -0.79
SCN9A-201ENST00000303354 ZRSR1Q15695 479 aaKnown RBP10.14□□□□□ -0.79
SCN9A-201ENST00000303354 RTF1Q92541 710 aaKnown RBP10.13□□□□□ -0.79
SCN9A-201ENST00000303354 MEX3CQ5U5Q3 659 aaKnown RBP10.13□□□□□ -0.79
SCN9A-201ENST00000303354 B4GALNT3Q6L9W6 998 aa10.13□□□□□ -0.79
SCN9A-201ENST00000303354 NGEFQ8N5V2 710 aa10.13□□□□□ -0.79
SCN9A-201ENST00000303354 HNRNPMP52272 730 aaKnown RBP eCLIP10.12□□□□□ -0.794e-9■■■□□ 16.5
SCN9A-201ENST00000303354 MORC1Q86VD1 984 aa10.12□□□□□ -0.79
SCN9A-201ENST00000303354 CASC1Q6TDU7 716 aa10.11□□□□□ -0.79
SCN9A-201ENST00000303354 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.11□□□□□ -0.793e-7■■■□□ 15
SCN9A-201ENST00000303354 ERICH6BQ5W0A0 696 aa10.1□□□□□ -0.79
SCN9A-201ENST00000303354 PTMAP06454 111 aaKnown RBP10.1□□□□□ -0.79
SCN9A-201ENST00000303354 BAZ1BQ9UIG0 1483 aaKnown RBP10.09□□□□□ -0.79
SCN9A-201ENST00000303354 RTN4Q9NQC3 1192 aaKnown RBP10.08□□□□□ -0.8
SCN9A-201ENST00000303354 RSF1Q96T23 1441 aaPredicted RBP10.08□□□□□ -0.8
SCN9A-201ENST00000303354 KIF3BO15066 747 aa10.08□□□□□ -0.8
SCN9A-201ENST00000303354 DNTTIP2Q5QJE6 756 aaKnown RBP10.08□□□□□ -0.8
SCN9A-201ENST00000303354 EVA1CP58658 441 aa10.08□□□□□ -0.8
SCN9A-201ENST00000303354 NGDNQ8NEJ9 315 aaKnown RBP10.08□□□□□ -0.8
SCN9A-201ENST00000303354 CCNB3Q8WWL7 1395 aa10.08□□□□□ -0.8
SCN9A-201ENST00000303354 SYTL4Q96C24 671 aaPredicted RBP10.07□□□□□ -0.8
SCN9A-201ENST00000303354 HDGFP51858 240 aaKnown RBP10.07□□□□□ -0.8
SCN9A-201ENST00000303354 TMX4Q9H1E5 349 aaPredicted RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms