RNA–Protein interactions for RNA: ENST00000301732.9

ABCA3-201, Transcript of ATP binding cassette subfamily A member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ABCA3, Length 6,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3-201ENST00000301732 STAG3Q9UJ98 1225 aa16.53■□□□□ 0.24
ABCA3-201ENST00000301732 DNTTIP2Q5QJE6 756 aaKnown RBP16.52■□□□□ 0.24
ABCA3-201ENST00000301732 PLCB2Q00722 1185 aa16.51■□□□□ 0.23
ABCA3-201ENST00000301732 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.51■□□□□ 0.23
ABCA3-201ENST00000301732 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.5■□□□□ 0.23
ABCA3-201ENST00000301732 WDR43Q15061 677 aaKnown RBP eCLIP16.48■□□□□ 0.23
ABCA3-201ENST00000301732 ANP32EQ9BTT0 268 aa16.48■□□□□ 0.23
ABCA3-201ENST00000301732 SUPT16HQ9Y5B9 1047 aaKnown RBP16.48■□□□□ 0.23
ABCA3-201ENST00000301732 PTMAP06454 111 aaKnown RBP16.47■□□□□ 0.23
ABCA3-201ENST00000301732 SPRYD3Q8NCJ5 442 aa16.46■□□□□ 0.23
ABCA3-201ENST00000301732 NCBP3Q53F19 620 aaKnown RBP16.42■□□□□ 0.22
ABCA3-201ENST00000301732 CDK11BP21127 795 aaKnown RBP16.41■□□□□ 0.22
ABCA3-201ENST00000301732 RGS3P49796 1198 aa16.4■□□□□ 0.22
ABCA3-201ENST00000301732 NEUROD2Q15784 382 aa16.4■□□□□ 0.22
ABCA3-201ENST00000301732 C14orf37Q86TY3 774 aa16.38■□□□□ 0.21
ABCA3-201ENST00000301732 PPM1GO15355 546 aaPredicted RBP16.35■□□□□ 0.21
ABCA3-201ENST00000301732 B4GALNT3Q6L9W6 998 aa16.34■□□□□ 0.21
ABCA3-201ENST00000301732 ESF1Q9H501 851 aaKnown RBP16.34■□□□□ 0.21
ABCA3-201ENST00000301732 MYH16Q9H6N6 1097 aa16.32■□□□□ 0.2
ABCA3-201ENST00000301732 CSRNP3Q8WYN3 585 aa16.31■□□□□ 0.2
ABCA3-201ENST00000301732 TNNT2P45379 298 aaPredicted RBP16.31■□□□□ 0.2
ABCA3-201ENST00000301732 BECN1Q14457 450 aa16.29■□□□□ 0.2
ABCA3-201ENST00000301732 RGL3Q3MIN7 710 aa16.29■□□□□ 0.2
ABCA3-201ENST00000301732 RRP7BPQ9NSQ0 103 aa16.27■□□□□ 0.2
ABCA3-201ENST00000301732 DEKP35659 375 aaKnown RBP16.27■□□□□ 0.19
ABCA3-201ENST00000301732 ABCC9O60706 1549 aa16.27■□□□□ 0.19
ABCA3-201ENST00000301732 FRAT1Q92837 279 aaPredicted RBP16.25■□□□□ 0.19
ABCA3-201ENST00000301732 ERICH6BQ5W0A0 696 aa16.24■□□□□ 0.19
ABCA3-201ENST00000301732 DDRGK1Q96HY6 314 aa16.24■□□□□ 0.19
ABCA3-201ENST00000301732 NAP1L2Q9ULW6 460 aaPredicted RBP16.23■□□□□ 0.19
ABCA3-201ENST00000301732 NOP58Q9Y2X3 529 aaKnown RBP16.23■□□□□ 0.19
ABCA3-201ENST00000301732 GOLGA6L22H0YM25 854 aa16.22■□□□□ 0.19
ABCA3-201ENST00000301732 ZRSR1Q15695 479 aaKnown RBP16.2■□□□□ 0.18
ABCA3-201ENST00000301732 GZF1Q9H116 711 aaPredicted RBP16.2■□□□□ 0.18
ABCA3-201ENST00000301732 FTSJ3Q8IY81 847 aaKnown RBP16.16■□□□□ 0.18
ABCA3-201ENST00000301732 CC2D1BQ5T0F9 858 aaKnown RBP16.14■□□□□ 0.17
ABCA3-201ENST00000301732 HSP90AB1P08238 724 aaKnown RBP16.14■□□□□ 0.17
ABCA3-201ENST00000301732 ANO8Q9HCE9 1232 aaPredicted RBP16.12■□□□□ 0.17
ABCA3-201ENST00000301732 APBB1O00213 710 aa16.11■□□□□ 0.17
ABCA3-201ENST00000301732 EIF4G2P78344 907 aaKnown RBP eCLIP16.11■□□□□ 0.17
ABCA3-201ENST00000301732 SOX12O15370 315 aa16.09■□□□□ 0.17
ABCA3-201ENST00000301732 SIN3AQ96ST3 1273 aa16.09■□□□□ 0.17
ABCA3-201ENST00000301732 PDE4CQ08493 712 aa16.08■□□□□ 0.16
ABCA3-201ENST00000301732 LMOD2Q6P5Q4 547 aa16.06■□□□□ 0.16
ABCA3-201ENST00000301732 CLSTN1O94985 981 aa16.05■□□□□ 0.16
ABCA3-201ENST00000301732 RBM19Q9Y4C8 960 aaKnown RBP16.05■□□□□ 0.16
ABCA3-201ENST00000301732 DRC7Q8IY82 874 aa16.05■□□□□ 0.16
ABCA3-201ENST00000301732 KCNH8Q96L42 1107 aa16.05■□□□□ 0.16
ABCA3-201ENST00000301732 SLKQ9H2G2 1235 aaPredicted RBP16.04■□□□□ 0.16
ABCA3-201ENST00000301732 FGD1P98174 961 aa16.04■□□□□ 0.16
ABCA3-201ENST00000301732 FOXD4L1Q9NU39 408 aa16.01■□□□□ 0.15
ABCA3-201ENST00000301732 CASC1Q6TDU7 716 aa16.01■□□□□ 0.15
ABCA3-201ENST00000301732 MSNP26038 577 aaKnown RBP16■□□□□ 0.15
ABCA3-201ENST00000301732 OS9Q13438 667 aaPredicted RBP16■□□□□ 0.15
ABCA3-201ENST00000301732 KCNJ4P48050 445 aa16■□□□□ 0.15
ABCA3-201ENST00000301732 PPP4R2Q9NY27 417 aa15.99■□□□□ 0.15
ABCA3-201ENST00000301732 U2SURPO15042 1029 aaKnown RBP15.99■□□□□ 0.15
ABCA3-201ENST00000301732 PPP1R15AO75807 674 aaPredicted RBP15.98■□□□□ 0.15
ABCA3-201ENST00000301732 HAP1P54257 671 aaPredicted RBP15.97■□□□□ 0.15
ABCA3-201ENST00000301732 TSPY4P0CV99 314 aa15.95■□□□□ 0.14
ABCA3-201ENST00000301732 TSPY10P0CW01 314 aa15.95■□□□□ 0.14
ABCA3-201ENST00000301732 KNSTRNQ9Y448 316 aa15.95■□□□□ 0.14
ABCA3-201ENST00000301732 MYO15BQ96JP2 1530 aa15.95■□□□□ 0.14
ABCA3-201ENST00000301732 CARD11Q9BXL7 1154 aa15.94■□□□□ 0.14
ABCA3-201ENST00000301732 NPHP1O15259 732 aa15.93■□□□□ 0.14
ABCA3-201ENST00000301732 ISY1Q9ULR0 285 aaKnown RBP15.93■□□□□ 0.14
ABCA3-201ENST00000301732 SAFB2Q14151 953 aaKnown RBP eCLIP15.93■□□□□ 0.14
ABCA3-201ENST00000301732 NOL8Q76FK4 1167 aaKnown RBP15.92■□□□□ 0.14
ABCA3-201ENST00000301732 GOLGA6L4A6NEF3 574 aa15.92■□□□□ 0.14
ABCA3-201ENST00000301732 FOXD4L5Q5VV16 416 aaPredicted RBP15.92■□□□□ 0.14
ABCA3-201ENST00000301732 FOXD4L4Q8WXT5 416 aaPredicted RBP15.92■□□□□ 0.14
ABCA3-201ENST00000301732 HSCBQ8IWL3 235 aa15.91■□□□□ 0.14
ABCA3-201ENST00000301732 MTUS2Q5JR59 1369 aa15.91■□□□□ 0.14
ABCA3-201ENST00000301732 CHAF1AQ13111 956 aaPredicted RBP15.88■□□□□ 0.13
ABCA3-201ENST00000301732 MAPK8IP3Q9UPT6 1336 aa15.88■□□□□ 0.13
ABCA3-201ENST00000301732 NPM1P06748 294 aaKnown RBP eCLIP15.88■□□□□ 0.13
ABCA3-201ENST00000301732 DCAF1Q9Y4B6 1507 aa15.88■□□□□ 0.13
ABCA3-201ENST00000301732 SLC4A3P48751 1232 aa15.87■□□□□ 0.13
ABCA3-201ENST00000301732 BCL11BQ9C0K0 894 aaPredicted RBP15.87■□□□□ 0.13
ABCA3-201ENST00000301732 TIMELESSQ9UNS1 1208 aa15.86■□□□□ 0.13
ABCA3-201ENST00000301732 CFAP53Q96M91 514 aa15.85■□□□□ 0.13
ABCA3-201ENST00000301732 GOLGA6L6A8MZA4 724 aa15.84■□□□□ 0.13
ABCA3-201ENST00000301732 FOXD4L6Q3SYB3 417 aaPredicted RBP15.84■□□□□ 0.13
ABCA3-201ENST00000301732 FOXD4L3Q6VB84 417 aaPredicted RBP15.84■□□□□ 0.13
ABCA3-201ENST00000301732 CREBRFQ8IUR6 639 aa15.84■□□□□ 0.13
ABCA3-201ENST00000301732 FBXO3Q9UK99 471 aa15.83■□□□□ 0.12
ABCA3-201ENST00000301732 TNNT3P45378 269 aaPredicted RBP15.81■□□□□ 0.12
ABCA3-201ENST00000301732 FOXD1Q16676 465 aa15.8■□□□□ 0.12
ABCA3-201ENST00000301732 TSHZ2Q9NRE2 1034 aa15.8■□□□□ 0.12
ABCA3-201ENST00000301732 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.79■□□□□ 0.12
ABCA3-201ENST00000301732 ZNF330Q9Y3S2 320 aaPredicted RBP15.79■□□□□ 0.12
ABCA3-201ENST00000301732 MFAP1P55081 439 aaKnown RBP15.79■□□□□ 0.12
ABCA3-201ENST00000301732 GOLGA2Q08379 1002 aa15.79■□□□□ 0.12
ABCA3-201ENST00000301732 PNNQ9H307 717 aaKnown RBP15.79■□□□□ 0.12
ABCA3-201ENST00000301732 VSIG10Q8N0Z9 540 aa15.77■□□□□ 0.12
ABCA3-201ENST00000301732 L1TD1Q5T7N2 865 aaKnown RBP15.77■□□□□ 0.12
ABCA3-201ENST00000301732 GNL2Q13823 731 aaKnown RBP15.76■□□□□ 0.11
ABCA3-201ENST00000301732 HSP90B1P14625 803 aaKnown RBP15.76■□□□□ 0.11
ABCA3-201ENST00000301732 NOC3LQ8WTT2 800 aaKnown RBP15.75■□□□□ 0.11
ABCA3-201ENST00000301732 POGKQ9P215 609 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms