RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 KCNH8Q96L42 1107 aa18.02■□□□□ 0.47
CHRFAM7A-201ENST00000299847 RGL3Q3MIN7 710 aa18.01■□□□□ 0.47
CHRFAM7A-201ENST00000299847 TULP1O00294 542 aaPredicted RBP18■□□□□ 0.47
CHRFAM7A-201ENST00000299847 TSPY4P0CV99 314 aa18■□□□□ 0.47
CHRFAM7A-201ENST00000299847 TSPY10P0CW01 314 aa18■□□□□ 0.47
CHRFAM7A-201ENST00000299847 TAOK2Q9UL54 1235 aa18■□□□□ 0.47
CHRFAM7A-201ENST00000299847 MTUS2Q5JR59 1369 aa17.98■□□□□ 0.47
CHRFAM7A-201ENST00000299847 PPM1GO15355 546 aaPredicted RBP17.97■□□□□ 0.47
CHRFAM7A-201ENST00000299847 NCLP19338 710 aaKnown RBP17.97■□□□□ 0.47
CHRFAM7A-201ENST00000299847 GLIPR1L2Q4G1C9 344 aa17.95■□□□□ 0.46
CHRFAM7A-201ENST00000299847 PPP1R15AO75807 674 aaPredicted RBP17.94■□□□□ 0.46
CHRFAM7A-201ENST00000299847 CHMP7Q8WUX9 453 aaPredicted RBP17.93■□□□□ 0.46
CHRFAM7A-201ENST00000299847 LAS1LQ9Y4W2 734 aaKnown RBP17.92■□□□□ 0.46
CHRFAM7A-201ENST00000299847 CDK11BP21127 795 aaKnown RBP17.91■□□□□ 0.46
CHRFAM7A-201ENST00000299847 NEUROD2Q15784 382 aa17.91■□□□□ 0.46
CHRFAM7A-201ENST00000299847 DCAF1Q9Y4B6 1507 aa17.91■□□□□ 0.46
CHRFAM7A-201ENST00000299847 EIF4G2P78344 907 aaKnown RBP eCLIP17.91■□□□□ 0.46
CHRFAM7A-201ENST00000299847 SUPT16HQ9Y5B9 1047 aaKnown RBP17.86■□□□□ 0.45
CHRFAM7A-201ENST00000299847 TNNT2P45379 298 aaPredicted RBP17.86■□□□□ 0.45
CHRFAM7A-201ENST00000299847 RTN4Q9NQC3 1192 aaKnown RBP17.86■□□□□ 0.45
CHRFAM7A-201ENST00000299847 HAP1P54257 671 aaPredicted RBP17.84■□□□□ 0.45
CHRFAM7A-201ENST00000299847 TRIM44Q96DX7 344 aaPredicted RBP17.84■□□□□ 0.45
CHRFAM7A-201ENST00000299847 BECN1Q14457 450 aa17.83■□□□□ 0.45
CHRFAM7A-201ENST00000299847 ARID4BQ4LE39 1312 aaPredicted RBP17.82■□□□□ 0.44
CHRFAM7A-201ENST00000299847 CLIP1P30622 1438 aa17.81■□□□□ 0.44
CHRFAM7A-201ENST00000299847 DDRGK1Q96HY6 314 aa17.8■□□□□ 0.44
CHRFAM7A-201ENST00000299847 FTSJ3Q8IY81 847 aaKnown RBP17.79■□□□□ 0.44
CHRFAM7A-201ENST00000299847 PTMAP06454 111 aaKnown RBP17.79■□□□□ 0.44
CHRFAM7A-201ENST00000299847 LMOD2Q6P5Q4 547 aa17.78■□□□□ 0.44
CHRFAM7A-201ENST00000299847 RGS3P49796 1198 aa17.78■□□□□ 0.44
CHRFAM7A-201ENST00000299847 CC2D1BQ5T0F9 858 aaKnown RBP17.77■□□□□ 0.44
CHRFAM7A-201ENST00000299847 MYO15BQ96JP2 1530 aa17.77■□□□□ 0.44
CHRFAM7A-201ENST00000299847 FRAT1Q92837 279 aaPredicted RBP17.76■□□□□ 0.43
CHRFAM7A-201ENST00000299847 ZCCHC6Q5VYS8 1495 aaKnown RBP17.76■□□□□ 0.43
CHRFAM7A-201ENST00000299847 KNSTRNQ9Y448 316 aa17.75■□□□□ 0.43
CHRFAM7A-201ENST00000299847 DNTTIP2Q5QJE6 756 aaKnown RBP17.74■□□□□ 0.43
CHRFAM7A-201ENST00000299847 PLCB2Q00722 1185 aa17.74■□□□□ 0.43
CHRFAM7A-201ENST00000299847 CARD11Q9BXL7 1154 aa17.74■□□□□ 0.43
CHRFAM7A-201ENST00000299847 SIN3AQ96ST3 1273 aa17.73■□□□□ 0.43
CHRFAM7A-201ENST00000299847 GOLGA6L22H0YM25 854 aa17.73■□□□□ 0.43
CHRFAM7A-201ENST00000299847 CFAP53Q96M91 514 aa17.71■□□□□ 0.43
CHRFAM7A-201ENST00000299847 ZRSR1Q15695 479 aaKnown RBP17.7■□□□□ 0.42
CHRFAM7A-201ENST00000299847 CASC1Q6TDU7 716 aa17.69■□□□□ 0.42
CHRFAM7A-201ENST00000299847 PLEKHD1A6NEE1 506 aa17.68■□□□□ 0.42
CHRFAM7A-201ENST00000299847 SOX12O15370 315 aa17.68■□□□□ 0.42
CHRFAM7A-201ENST00000299847 SPRYD3Q8NCJ5 442 aa17.68■□□□□ 0.42
CHRFAM7A-201ENST00000299847 NAP1L2Q9ULW6 460 aaPredicted RBP17.67■□□□□ 0.42
CHRFAM7A-201ENST00000299847 MAPK8IP3Q9UPT6 1336 aa17.66■□□□□ 0.42
CHRFAM7A-201ENST00000299847 NAP1L5Q96NT1 182 aaPredicted RBP17.66■□□□□ 0.42
CHRFAM7A-201ENST00000299847 U2SURPO15042 1029 aaKnown RBP17.65■□□□□ 0.42
CHRFAM7A-201ENST00000299847 NPHP1O15259 732 aa17.65■□□□□ 0.42
CHRFAM7A-201ENST00000299847 CEP162Q5TB80 1403 aa17.65■□□□□ 0.42
CHRFAM7A-201ENST00000299847 B4GALNT3Q6L9W6 998 aa17.64■□□□□ 0.41
CHRFAM7A-201ENST00000299847 CFDP1Q9UEE9 299 aaPredicted RBP17.64■□□□□ 0.41
CHRFAM7A-201ENST00000299847 POGKQ9P215 609 aa17.63■□□□□ 0.41
CHRFAM7A-201ENST00000299847 OS9Q13438 667 aaPredicted RBP17.63■□□□□ 0.41
CHRFAM7A-201ENST00000299847 ANP32EQ9BTT0 268 aa17.61■□□□□ 0.41
CHRFAM7A-201ENST00000299847 HSP90AB1P08238 724 aaKnown RBP17.6■□□□□ 0.41
CHRFAM7A-201ENST00000299847 SAFB2Q14151 953 aaKnown RBP eCLIP17.59■□□□□ 0.41
CHRFAM7A-201ENST00000299847 RSF1Q96T23 1441 aaPredicted RBP17.58■□□□□ 0.4
CHRFAM7A-201ENST00000299847 GOLGA3Q08378 1498 aa17.57■□□□□ 0.4
CHRFAM7A-201ENST00000299847 NCBP3Q53F19 620 aaKnown RBP17.56■□□□□ 0.4
CHRFAM7A-201ENST00000299847 FGD1P98174 961 aa17.56■□□□□ 0.4
CHRFAM7A-201ENST00000299847 NOP58Q9Y2X3 529 aaKnown RBP17.54■□□□□ 0.4
CHRFAM7A-201ENST00000299847 MLECQ14165 292 aa17.54■□□□□ 0.4
CHRFAM7A-201ENST00000299847 KCNJ4P48050 445 aa17.54■□□□□ 0.4
CHRFAM7A-201ENST00000299847 CDCA8Q53HL2 280 aa17.53■□□□□ 0.4
CHRFAM7A-201ENST00000299847 PPP4R2Q9NY27 417 aa17.52■□□□□ 0.4
CHRFAM7A-201ENST00000299847 NUDCQ9Y266 331 aa17.52■□□□□ 0.4
CHRFAM7A-201ENST00000299847 APBB1O00213 710 aa17.51■□□□□ 0.39
CHRFAM7A-201ENST00000299847 AMER1Q5JTC6 1135 aaPredicted RBP17.5■□□□□ 0.39
CHRFAM7A-201ENST00000299847 DCAF11Q8TEB1 546 aa17.49■□□□□ 0.39
CHRFAM7A-201ENST00000299847 CLSTN1O94985 981 aa17.47■□□□□ 0.39
CHRFAM7A-201ENST00000299847 GOLGA2Q08379 1002 aa17.46■□□□□ 0.39
CHRFAM7A-201ENST00000299847 FOXD1Q16676 465 aa17.45■□□□□ 0.38
CHRFAM7A-201ENST00000299847 SRPK2P78362 688 aaKnown RBP17.44■□□□□ 0.38
CHRFAM7A-201ENST00000299847 EIF4G1Q04637 1599 aaKnown RBP17.43■□□□□ 0.38
CHRFAM7A-201ENST00000299847 STK26Q9P289 416 aa17.43■□□□□ 0.38
CHRFAM7A-201ENST00000299847 ISY1Q9ULR0 285 aaKnown RBP17.43■□□□□ 0.38
CHRFAM7A-201ENST00000299847 ARID3AQ99856 593 aa17.42■□□□□ 0.38
CHRFAM7A-201ENST00000299847 HSCBQ8IWL3 235 aa17.41■□□□□ 0.38
CHRFAM7A-201ENST00000299847 ERICH6BQ5W0A0 696 aa17.41■□□□□ 0.38
CHRFAM7A-201ENST00000299847 WRNQ14191 1432 aaPredicted RBP eCLIP17.39■□□□□ 0.37
CHRFAM7A-201ENST00000299847 GOLGA6L4A6NEF3 574 aa17.38■□□□□ 0.37
CHRFAM7A-201ENST00000299847 TMF1P82094 1093 aa17.38■□□□□ 0.37
CHRFAM7A-201ENST00000299847 DRC7Q8IY82 874 aa17.38■□□□□ 0.37
CHRFAM7A-201ENST00000299847 MORC1Q86VD1 984 aa17.38■□□□□ 0.37
CHRFAM7A-201ENST00000299847 CCDC180Q9P1Z9 1646 aa17.37■□□□□ 0.37
CHRFAM7A-201ENST00000299847 GOLGA6L6A8MZA4 724 aa17.37■□□□□ 0.37
CHRFAM7A-201ENST00000299847 ZNF330Q9Y3S2 320 aaPredicted RBP17.37■□□□□ 0.37
CHRFAM7A-201ENST00000299847 TRHP20396 242 aaPredicted RBP17.36■□□□□ 0.37
CHRFAM7A-201ENST00000299847 GZF1Q9H116 711 aaPredicted RBP17.35■□□□□ 0.37
CHRFAM7A-201ENST00000299847 DEKP35659 375 aaKnown RBP17.34■□□□□ 0.37
CHRFAM7A-201ENST00000299847 CCNB3Q8WWL7 1395 aa17.34■□□□□ 0.37
CHRFAM7A-201ENST00000299847 HSPA5P11021 654 aaKnown RBP17.34■□□□□ 0.37
CHRFAM7A-201ENST00000299847 KIF27Q86VH2 1401 aa17.33■□□□□ 0.36
CHRFAM7A-201ENST00000299847 PAK3O75914 559 aaPredicted RBP17.33■□□□□ 0.36
CHRFAM7A-201ENST00000299847 ERCC6Q03468 1493 aa17.33■□□□□ 0.36
CHRFAM7A-201ENST00000299847 BAZ1BQ9UIG0 1483 aaKnown RBP17.32■□□□□ 0.36
CHRFAM7A-201ENST00000299847 GGT6Q6P531 493 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms