RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 C19orf67A6NJJ6 358 aa11.49□□□□□ -0.57
CCDC54-201ENST00000261058 EVX2Q03828 476 aa11.49□□□□□ -0.57
CCDC54-201ENST00000261058 FAM212AQ96EL1 285 aa11.49□□□□□ -0.57
CCDC54-201ENST00000261058 FARP1Q9Y4F1 1045 aaPredicted RBP11.48□□□□□ -0.57
CCDC54-201ENST00000261058 DCAF8Q5TAQ9 597 aa11.45□□□□□ -0.58
CCDC54-201ENST00000261058 DCAF8L2P0C7V8 631 aa11.44□□□□□ -0.58
CCDC54-201ENST00000261058 CHRM1P11229 460 aaPredicted RBP11.43□□□□□ -0.58
CCDC54-201ENST00000261058 RNF25Q96BH1 459 aaPredicted RBP11.43□□□□□ -0.58
CCDC54-201ENST00000261058 PLCB2Q00722 1185 aa11.39□□□□□ -0.59
CCDC54-201ENST00000261058 BBXQ8WY36 941 aaPredicted RBP11.35□□□□□ -0.59
CCDC54-201ENST00000261058 RIOK3O14730 519 aaKnown RBP11.34□□□□□ -0.59
CCDC54-201ENST00000261058 HS6ST3Q8IZP7 471 aa11.31□□□□□ -0.6
CCDC54-201ENST00000261058 DNAJC5Q9H3Z4 198 aa11.31□□□□□ -0.6
CCDC54-201ENST00000261058 GABBR2O75899 941 aa11.3□□□□□ -0.6
CCDC54-201ENST00000261058 PYGBP11216 843 aa11.3□□□□□ -0.6
CCDC54-201ENST00000261058 CCDC61Q9Y6R9 512 aa11.3□□□□□ -0.6
CCDC54-201ENST00000261058 TSPYL2Q9H2G4 693 aaPredicted RBP11.29□□□□□ -0.6
CCDC54-201ENST00000261058 SGIP1Q9BQI5 828 aa11.28□□□□□ -0.6
CCDC54-201ENST00000261058 PLSCR2Q9NRY7 297 aa11.28□□□□□ -0.6
CCDC54-201ENST00000261058 CHGAP10645 457 aaKnown RBP11.27□□□□□ -0.6
CCDC54-201ENST00000261058 CD44P16070 742 aaKnown RBP11.27□□□□□ -0.6
CCDC54-201ENST00000261058 TAOK2Q9UL54 1235 aa11.27□□□□□ -0.6
CCDC54-201ENST00000261058 VGFO15240 615 aaPredicted RBP11.26□□□□□ -0.61
CCDC54-201ENST00000261058 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.25□□□□□ -0.61
CCDC54-201ENST00000261058 CLCN6P51797 869 aa11.24□□□□□ -0.61
CCDC54-201ENST00000261058 PAK3O75914 559 aaPredicted RBP11.19□□□□□ -0.62
CCDC54-201ENST00000261058 ZNF467Q7Z7K2 595 aaPredicted RBP11.19□□□□□ -0.62
CCDC54-201ENST00000261058 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.18□□□□□ -0.62
CCDC54-201ENST00000261058 ZFP91Q96JP5 570 aaPredicted RBP11.18□□□□□ -0.62
CCDC54-201ENST00000261058 NKX1-1Q15270 411 aaPredicted RBP11.16□□□□□ -0.62
CCDC54-201ENST00000261058 PAXIP1Q6ZW49 1069 aaPredicted RBP11.16□□□□□ -0.62
CCDC54-201ENST00000261058 ZNF579Q8NAF0 562 aaKnown RBP11.16□□□□□ -0.62
CCDC54-201ENST00000261058 KIF12Q96FN5 646 aa11.16□□□□□ -0.62
CCDC54-201ENST00000261058 STK25O00506 426 aa11.15□□□□□ -0.62
CCDC54-201ENST00000261058 SPRYD3Q8NCJ5 442 aa11.15□□□□□ -0.62
CCDC54-201ENST00000261058 BCL11BQ9C0K0 894 aaPredicted RBP11.13□□□□□ -0.63
CCDC54-201ENST00000261058 HAP1P54257 671 aaPredicted RBP11.11□□□□□ -0.63
CCDC54-201ENST00000261058 PDAP1Q13442 181 aaKnown RBP11.11□□□□□ -0.63
CCDC54-201ENST00000261058 ZRANB1Q9UGI0 708 aa11.11□□□□□ -0.63
CCDC54-201ENST00000261058 PCDHB8Q9UN66 801 aa11.11□□□□□ -0.63
CCDC54-201ENST00000261058 PCDHB13Q9Y5F0 798 aa11.11□□□□□ -0.63
CCDC54-201ENST00000261058 MAP3K13O43283 966 aa11.1□□□□□ -0.63
CCDC54-201ENST00000261058 CFAP44Q96MT7 982 aa11.1□□□□□ -0.63
CCDC54-201ENST00000261058 IFNL1Q8IU54 200 aa11.09□□□□□ -0.63
CCDC54-201ENST00000261058 STK24Q9Y6E0 443 aa11.09□□□□□ -0.63
CCDC54-201ENST00000261058 GTPBP6O43824 516 aaPredicted RBP11.07□□□□□ -0.64
CCDC54-201ENST00000261058 LHX8Q68G74 356 aa11.06□□□□□ -0.64
CCDC54-201ENST00000261058 PHF12Q96QT6 1004 aa11.06□□□□□ -0.64
CCDC54-201ENST00000261058 PSEN1P49768 467 aa11.05□□□□□ -0.64
CCDC54-201ENST00000261058 VSIG10Q8N0Z9 540 aa11.05□□□□□ -0.64
CCDC54-201ENST00000261058 DCBLD2Q96PD2 775 aa11.03□□□□□ -0.64
CCDC54-201ENST00000261058 POTEIP0CG38 1075 aa11.02□□□□□ -0.64
CCDC54-201ENST00000261058 TSHZ2Q9NRE2 1034 aa11□□□□□ -0.65
CCDC54-201ENST00000261058 RYDENQ9NUL5 291 aaKnown RBP10.99□□□□□ -0.65
CCDC54-201ENST00000261058 KDM2AQ9Y2K7 1162 aa10.98□□□□□ -0.65
CCDC54-201ENST00000261058 MS4A3Q96HJ5 214 aa10.95□□□□□ -0.66
CCDC54-201ENST00000261058 GALR2O43603 387 aaPredicted RBP10.93□□□□□ -0.66
CCDC54-201ENST00000261058 MFRPQ9BY79 579 aa10.92□□□□□ -0.66
CCDC54-201ENST00000261058 TRPC6Q9Y210 931 aa10.92□□□□□ -0.66
CCDC54-201ENST00000261058 EFCAB3Q8N7B9 438 aa10.89□□□□□ -0.67
CCDC54-201ENST00000261058 CABP2Q9NPB3 220 aa10.89□□□□□ -0.67
CCDC54-201ENST00000261058 FBXO22Q8NEZ5 403 aa10.88□□□□□ -0.67
CCDC54-201ENST00000261058 SOX12O15370 315 aa10.87□□□□□ -0.67
CCDC54-201ENST00000261058 TIE1P35590 1138 aa10.87□□□□□ -0.67
CCDC54-201ENST00000261058 TMEM106CQ9BVX2 250 aa10.86□□□□□ -0.67
CCDC54-201ENST00000261058 TTLL13PA6NNM8 815 aa10.83□□□□□ -0.68
CCDC54-201ENST00000261058 NLRP6P59044 892 aa10.83□□□□□ -0.68
CCDC54-201ENST00000261058 BMP2KQ9NSY1 1161 aaPredicted RBP10.82□□□□□ -0.68
CCDC54-201ENST00000261058 PHF8Q9UPP1 1060 aa10.82□□□□□ -0.68
CCDC54-201ENST00000261058 ILDR1Q86SU0 546 aaPredicted RBP10.8□□□□□ -0.68
CCDC54-201ENST00000261058 MS4A4AQ96JQ5 239 aa10.78□□□□□ -0.68
CCDC54-201ENST00000261058 PPP1R37O75864 691 aa10.77□□□□□ -0.68
CCDC54-201ENST00000261058 ASTLQ6HA08 431 aaPredicted RBP10.75□□□□□ -0.69
CCDC54-201ENST00000261058 CADPS2Q86UW7 1296 aa10.75□□□□□ -0.69
CCDC54-201ENST00000261058 GOLGA2Q08379 1002 aa10.74□□□□□ -0.69
CCDC54-201ENST00000261058 MKRN3Q13064 507 aaKnown RBP10.73□□□□□ -0.69
CCDC54-201ENST00000261058 BCANQ96GW7 911 aa10.73□□□□□ -0.69
CCDC54-201ENST00000261058 TRIM35Q9UPQ4 493 aa10.73□□□□□ -0.69
CCDC54-201ENST00000261058 ATMINO43313 823 aaPredicted RBP10.71□□□□□ -0.69
CCDC54-201ENST00000261058 SLC39A7Q92504 469 aa10.71□□□□□ -0.69
CCDC54-201ENST00000261058 ATN1P54259 1190 aaPredicted RBP10.69□□□□□ -0.7
CCDC54-201ENST00000261058 PELP1Q8IZL8 1130 aaKnown RBP10.69□□□□□ -0.7
CCDC54-201ENST00000261058 C7P10643 843 aa10.68□□□□□ -0.7
CCDC54-201ENST00000261058 METRNQ9UJH8 293 aa10.67□□□□□ -0.7
CCDC54-201ENST00000261058 IER5LQ5T953 404 aa10.66□□□□□ -0.7
CCDC54-201ENST00000261058 OTUD5Q96G74 571 aa10.66□□□□□ -0.7
CCDC54-201ENST00000261058 POTEB2H3BUK9 544 aa10.65□□□□□ -0.7
CCDC54-201ENST00000261058 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.65□□□□□ -0.7
CCDC54-201ENST00000261058 IRX5P78411 483 aaPredicted RBP10.64□□□□□ -0.71
CCDC54-201ENST00000261058 PDCD7Q8N8D1 485 aaKnown RBP10.64□□□□□ -0.71
CCDC54-201ENST00000261058 NCKAP5LQ9HCH0 1330 aa10.61□□□□□ -0.71
CCDC54-201ENST00000261058 CRISPLD2Q9H0B8 497 aa10.59□□□□□ -0.71
CCDC54-201ENST00000261058 MAMSTRQ6ZN01 415 aa10.58□□□□□ -0.72
CCDC54-201ENST00000261058 DPY19L2Q6NUT2 758 aa10.58□□□□□ -0.72
CCDC54-201ENST00000261058 OCEL1Q9H607 264 aa10.58□□□□□ -0.72
CCDC54-201ENST00000261058 MFSD10Q14728 455 aa10.57□□□□□ -0.72
CCDC54-201ENST00000261058 P3H3Q8IVL6 736 aa10.57□□□□□ -0.72
CCDC54-201ENST00000261058 TMEM121BQ9BXQ6 578 aaPredicted RBP10.56□□□□□ -0.72
CCDC54-201ENST00000261058 WDR70Q9NW82 654 aa10.55□□□□□ -0.72
CCDC54-201ENST00000261058 KCNV2Q8TDN2 545 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms