RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ZNF503-AS2A6NEH8 195 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 Q6ZPA2 131 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 IGHV3-16A0A0C4DH30 117 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 hDV103S1A0JD37 113 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 H3BPC8 53 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 APOC4P55056 127 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 IGHV7-81A0A0B4J1V7 117 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 H3BUX3 64 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 TMEM254Q8TBM7 123 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 UBE2D4Q9Y2X8 147 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 SPRNQ5BIV9 151 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 CCDC140Q96MF4 163 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 NOTCH3Q9UM47 2321 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 VWA8A3KMH1 1905 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 A0A096LNJ9 63 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 PATE3B3GLJ2 98 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 EBI3Q14213 229 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 RETNQ9HD89 108 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 COX6B1P14854 86 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 NTM-AS1Q6ZSK4 140 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 APRG1Q8IVJ8 170 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 LINC01561Q8N1V8 128 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 CDKN2A-AS1Q9UH64 79 aa3.51□□□□□ -1.85
SCN1A-220ENST00000641603 DIAPH2-AS1Q14236 149 aa3.5□□□□□ -1.85
SCN1A-220ENST00000641603 LINC01600Q96MT4 127 aa3.5□□□□□ -1.85
SCN1A-220ENST00000641603 ZFAND2AQ8N6M9 145 aa3.5□□□□□ -1.85
SCN1A-220ENST00000641603 Q9HAA7 133 aa3.5□□□□□ -1.85
SCN1A-220ENST00000641603 RPL35AP18077 110 aaKnown RBP3.5□□□□□ -1.85
SCN1A-220ENST00000641603 TSHBP01222 138 aa3.5□□□□□ -1.85
SCN1A-220ENST00000641603 DSCAMO60469 2012 aa3.5□□□□□ -1.85
SCN1A-220ENST00000641603 ARHGAP21Q5T5U3 1957 aa3.5□□□□□ -1.85
SCN1A-220ENST00000641603 LINC01560Q8TB33 94 aa3.5□□□□□ -1.85
SCN1A-220ENST00000641603 PRAC2D3DTV9 90 aa3.5□□□□□ -1.85
SCN1A-220ENST00000641603 IGLV4-69A0A075B6H9 119 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 UBE2E2Q96LR5 201 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 BPESC1Q9GZL8 116 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 AMELXQ99217 191 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 CYP4F30PQ9H0H9 118 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 LINC01356Q8N9X3 169 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 ZNF580Q9UK33 172 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 KLLNB2CW77 178 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 IGLV2-18A0A075B6J9 118 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 BRI3O95415 125 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 NHLRC4P0CG21 123 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-220ENST00000641603 ZFAND3Q9H8U3 227 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 CELA1Q9UNI1 258 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 ODF3BA8MYP8 253 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 ANGP03950 147 aaKnown RBP3.49□□□□□ -1.85
SCN1A-220ENST00000641603 IGF2-ASQ6U949 168 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 TRBV6-4A0A1B0GX49 114 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 CRIP1P50238 77 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 SPAG11BQ08648 103 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 DEFB114Q30KQ6 69 aa3.49□□□□□ -1.85
SCN1A-220ENST00000641603 NCR3O14931 201 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 IGFL2Q6UWQ7 119 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 CAMK2N2Q96S95 79 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 IGHV3-38A0A0C4DH36 116 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 SMCPP49901 116 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-220ENST00000641603 NBASA2RRP1 2371 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 Q8N9W7 124 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 IGHV3OR16-10A0A075B7F0 116 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 KLKP1Q107X0 134 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 Q8IZM0 81 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 EPOPA6NHQ4 379 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 CTSZQ9UBR2 303 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 CUL9Q8IWT3 2517 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 E7EQL1 145 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 MED12Q93074 2177 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 DCANP1Q8TF63 244 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 SNURFQ9Y675 71 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 G3V318 75 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 RNASE13Q5GAN3 156 aaKnown RBP3.48□□□□□ -1.85
SCN1A-220ENST00000641603 C5orf56Q8N8D9 126 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 CREBBPQ92793 2442 aa3.48□□□□□ -1.85
SCN1A-220ENST00000641603 FAM30AQ9NZY2 134 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 CD164L2Q6UWJ8 174 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 SMIM11BQ8TCY0 68 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 WFDC10AQ9H1F0 79 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 WISP2O76076 250 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 MSMBP08118 114 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 EML6Q6ZMW3 1958 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 PKDREJQ9NTG1 2253 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 SDK2Q58EX2 2172 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 GVINP1Q7Z2Y8 2422 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 IGF1P05019 195 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 BEAN1Q3B7T3 259 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 Q8N9L7 120 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 Q8N6K4 173 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 HIGD2AQ9BW72 106 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 CACNA1GO43497 2377 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 LOC110117498A0A087WWA1 95 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 M0R378 163 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 Q6ZS46 218 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 Q8N3U1 123 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 Q8N814 137 aa3.47□□□□□ -1.85
SCN1A-220ENST00000641603 DEFB130BP0DP73 79 aa3.46□□□□□ -1.86
SCN1A-220ENST00000641603 DEFB130AP0DP74 79 aa3.46□□□□□ -1.86
SCN1A-220ENST00000641603 K7EQG2 157 aa3.46□□□□□ -1.86
SCN1A-220ENST00000641603 POM121L12Q8N7R1 296 aa3.46□□□□□ -1.86
SCN1A-220ENST00000641603 LINC00467Q9BRT7 94 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms