RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CTSGP08311 255 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 ACYP2P14621 99 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 C10orf25Q5T742 122 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 Q8TAT8 98 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 HRCT1Q6UXD1 115 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 COX6B2Q6YFQ2 88 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 MDFIQ99750 246 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 IGHV4OR15-8A0A075B7B6 117 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 IGKV1D-8A0A087WSZ0 117 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 A0A087WW49 117 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 Q8N1Y9 231 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 TPSG1Q9NRR2 321 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 IGHV1-18A0A0C4DH31 117 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 C10orf91Q5T1B1 145 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 FAM60AQ9NP50 221 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 HIGD1BQ9P298 99 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 IGHV3-38A0A0C4DH36 116 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 TRBV10-2A0A0K0K1G8 114 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 ADCYAP1P18509 176 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 VN1R4Q7Z5H5 301 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 C9orf85Q96MD7 179 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 LGALS9O00182 355 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 TMEM200BQ69YZ2 307 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 ZNF497Q6ZNH5 498 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 WFDC5Q8TCV5 224 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 NOP10Q9NPE3 64 aaKnown RBP2.18□□□□□ -2.06
SCN1A-219ENST00000641575 CCDC179H3BU77 68 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 HRKO00198 91 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 MED14OSP0DP75 135 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 SRXN1Q9BYN0 137 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 WISP3O95389 354 aaPredicted RBP2.18□□□□□ -2.06
SCN1A-219ENST00000641575 CXCL6P80162 114 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 DEFB104AQ8WTQ1 72 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 FRYLO94915 3013 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 RBAKDNA6NC62 111 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 IGLC6P0CF74 106 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 CRYBA2P53672 197 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 IGHV1-58A0A0C4DH39 117 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 IGLV3-25P01717 112 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 LINC00271P0C7V0 271 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 FAM19A1Q7Z5A9 133 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 MRPL35Q9NZE8 188 aaKnown RBP2.17□□□□□ -2.06
SCN1A-219ENST00000641575 IGHV4-4A0A075B6R2 117 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 IGLV1-36A0A0B4J1U3 117 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 PMS2P5A8MQ11 134 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 FHL2Q14192 279 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 Q6ZS49 121 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 CTHRC1Q96CG8 243 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 BPY2O14599 106 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 C2orf66Q6UXQ4 117 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 C3orf84H3BNL1 204 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 ARMS2P0C7Q2 107 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 EIF4EBP1Q13541 118 aaPredicted RBP2.17□□□□□ -2.06
SCN1A-219ENST00000641575 Q6P435 159 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 KAAG1Q9UBP8 84 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 LINC00694P0DN24 101 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 FAM222AQ5U5X8 452 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 RPP25LQ8N5L8 163 aaKnown RBP2.17□□□□□ -2.06
SCN1A-219ENST00000641575 BLCAPP62952 87 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 LINC01555Q8NAE3 123 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 IGLV3-12A0A075B6K2 115 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 KIAA0040Q15053 153 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 Q9H8V8 135 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 C20orf78Q9BR46 151 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 RBM12B-AS1Q9P1G2 102 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 WIPF3A6NGB9 483 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 IGHV4-59P01825 116 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 WWC2-AS2Q96NR7 200 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 IGKV1-5P01602 117 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 GAFA1Q96PS6 74 aa2.17□□□□□ -2.06
SCN1A-219ENST00000641575 CHCHD2Q9Y6H1 151 aaPredicted RBP2.17□□□□□ -2.06
SCN1A-219ENST00000641575 A0A0J9YXY3 114 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 SPINK13Q1W4C9 94 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 KLK12Q9UKR0 248 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 WDR83OSQ9Y284 106 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 TMEM213A2RRL7 107 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 LOC107984640A0A0U1RRK4 108 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 ESM1Q9NQ30 184 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 IGF1P05019 195 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 DAND5Q8N907 189 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 CLEC2BQ92478 149 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 SND1-IT1Q9HBX3 110 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 COL11A2P13942 1736 aaPredicted RBP2.16□□□□□ -2.06
SCN1A-219ENST00000641575 TRBV6-6A0A0A6YYG2 114 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 PIK3CD-AS1Q5SR53 167 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 SHANK2-AS3Q9BTD1 123 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 LINC00473A8K010 186 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 COX17Q14061 63 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 GGNQ86UU5 652 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 H0YJW9 148 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 HIGD2AQ9BW72 106 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 ATP6V0E1O15342 81 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 TMEM14EPQ6UXP3 125 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 LINC00336Q6ZUF6 198 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 SLC22A18ASQ8N1D0 253 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 C9orf106Q8NAJ2 232 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 C19orf71A6NCJ1 209 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 IGHV1-46P01743 117 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 IGKV1D-13A0A0B4J2D9 117 aa2.16□□□□□ -2.06
SCN1A-219ENST00000641575 TRBV27A0A0K0K1C4 114 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms