RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 IGHV3-73A0A0B4J1V6 119 aa15.52■□□□□ 0.08
LIME1-210ENST00000621325 ZFP2Q6ZN57 461 aa15.52■□□□□ 0.07
LIME1-210ENST00000621325 VCYO14598 125 aa15.51■□□□□ 0.07
LIME1-210ENST00000621325 GTSCR1Q86UQ5 136 aa15.51■□□□□ 0.07
LIME1-210ENST00000621325 TRBV6-5A0A0K0K1A5 114 aa15.51■□□□□ 0.07
LIME1-210ENST00000621325 NDUFA7O95182 113 aa15.51■□□□□ 0.07
LIME1-210ENST00000621325 ZC2HC1BQ5TFG8 222 aa15.51■□□□□ 0.07
LIME1-210ENST00000621325 TTTY13Q9BZ97 58 aa15.51■□□□□ 0.07
LIME1-210ENST00000621325 STHQ8IWL8 128 aa15.5■□□□□ 0.07
LIME1-210ENST00000621325 PRO0461Q9UI25 63 aa15.5■□□□□ 0.07
LIME1-210ENST00000621325 NOTCH3Q9UM47 2321 aa15.49■□□□□ 0.07
LIME1-210ENST00000621325 INSP01308 110 aa15.49■□□□□ 0.07
LIME1-210ENST00000621325 KRTAP10-3P60369 221 aa15.49■□□□□ 0.07
LIME1-210ENST00000621325 NEXN-AS1Q8NBZ9 246 aa15.49■□□□□ 0.07
LIME1-210ENST00000621325 TRBV27A0A0K0K1C4 114 aa15.49■□□□□ 0.07
LIME1-210ENST00000621325 APOMO95445 188 aa15.49■□□□□ 0.07
LIME1-210ENST00000621325 RPL39P62891 51 aaKnown RBP15.49■□□□□ 0.07
LIME1-210ENST00000621325 GAGE13Q4V321 117 aa15.49■□□□□ 0.07
LIME1-210ENST00000621325 C11orf72Q8NBR9 251 aa15.49■□□□□ 0.07
LIME1-210ENST00000621325 BAALCQ8WXS3 180 aa15.49■□□□□ 0.07
LIME1-210ENST00000621325 KIR2DL4Q99706 377 aa15.49■□□□□ 0.07
LIME1-210ENST00000621325 NHP2Q9NX24 153 aaKnown RBP15.49■□□□□ 0.07
LIME1-210ENST00000621325 TP53TG1Q9Y2A0 90 aa15.49■□□□□ 0.07
LIME1-210ENST00000621325 E9PLD3 99 aa15.48■□□□□ 0.07
LIME1-210ENST00000621325 A0A1B0GWB2 263 aa15.48■□□□□ 0.07
LIME1-210ENST00000621325 TRPT1Q86TN4 253 aaKnown RBP15.48■□□□□ 0.07
LIME1-210ENST00000621325 TRAV12-1A0A0B4J245 112 aa15.47■□□□□ 0.07
LIME1-210ENST00000621325 M0R2P5 195 aa15.47■□□□□ 0.07
LIME1-210ENST00000621325 NHLRC4P0CG21 123 aaPredicted RBP15.47■□□□□ 0.07
LIME1-210ENST00000621325 P0DMU3 169 aa15.47■□□□□ 0.07
LIME1-210ENST00000621325 FAM231AP0DMU4 169 aa15.47■□□□□ 0.07
LIME1-210ENST00000621325 FAM231CP0DMU5 169 aa15.47■□□□□ 0.07
LIME1-210ENST00000621325 ZNF415Q09FC8 603 aa15.47■□□□□ 0.07
LIME1-210ENST00000621325 FOXI1Q12951 378 aa15.47■□□□□ 0.07
LIME1-210ENST00000621325 WFDC10AQ9H1F0 79 aa15.47■□□□□ 0.07
LIME1-210ENST00000621325 IGHV3OR16-12A0A075B7B8 117 aa15.46■□□□□ 0.07
LIME1-210ENST00000621325 H7C1H1 209 aa15.46■□□□□ 0.07
LIME1-210ENST00000621325 TSHBP01222 138 aa15.46■□□□□ 0.07
LIME1-210ENST00000621325 PRSS29PA6NIE9 313 aa15.46■□□□□ 0.07
LIME1-210ENST00000621325 IGLL5B9A064 214 aa15.46■□□□□ 0.07
LIME1-210ENST00000621325 INAFM1C9JVW0 142 aa15.46■□□□□ 0.07
LIME1-210ENST00000621325 F8VRH5 84 aa15.46■□□□□ 0.07
LIME1-210ENST00000621325 C1orf158Q8N1D5 194 aa15.46■□□□□ 0.07
LIME1-210ENST00000621325 NACAE9PAV3 2078 aa15.46■□□□□ 0.06
LIME1-210ENST00000621325 Q9UF83 564 aa15.45■□□□□ 0.06
LIME1-210ENST00000621325 Q6ZSN1 163 aa15.45■□□□□ 0.06
LIME1-210ENST00000621325 FN1P02751 2386 aaKnown RBP15.45■□□□□ 0.06
LIME1-210ENST00000621325 C2CD3Q4AC94 2353 aa15.45■□□□□ 0.06
LIME1-210ENST00000621325 IGIPA6NJ69 53 aa15.44■□□□□ 0.06
LIME1-210ENST00000621325 IGLV1-51P01701 117 aa15.44■□□□□ 0.06
LIME1-210ENST00000621325 CITED1Q99966 193 aa15.44■□□□□ 0.06
LIME1-210ENST00000621325 LINC00467Q9BRT7 94 aa15.44■□□□□ 0.06
LIME1-210ENST00000621325 PLNP26678 52 aa15.44■□□□□ 0.06
LIME1-210ENST00000621325 NFE4Q86UQ8 179 aa15.44■□□□□ 0.06
LIME1-210ENST00000621325 NSD1Q96L73 2696 aaPredicted RBP15.43■□□□□ 0.06
LIME1-210ENST00000621325 CCDC179H3BU77 68 aa15.43■□□□□ 0.06
LIME1-210ENST00000621325 CFAP126Q5VTH2 177 aa15.42■□□□□ 0.06
LIME1-210ENST00000621325 A8MWV9 139 aa15.42■□□□□ 0.06
LIME1-210ENST00000621325 CHAC1Q9BUX1 264 aa15.4■□□□□ 0.06
LIME1-210ENST00000621325 C19orf73Q9NVV2 129 aa15.4■□□□□ 0.06
LIME1-210ENST00000621325 HIVEP1P15822 2718 aa15.4■□□□□ 0.06
LIME1-210ENST00000621325 GIG44P09565 113 aaPredicted RBP15.39■□□□□ 0.05
LIME1-210ENST00000621325 I3L3M4 83 aa15.39■□□□□ 0.05
LIME1-210ENST00000621325 EMP1P54849 157 aa15.39■□□□□ 0.05
LIME1-210ENST00000621325 ZFAND6Q6FIF0 208 aa15.39■□□□□ 0.05
LIME1-210ENST00000621325 MAPKAPK5-AS1Q8N8E1 139 aa15.39■□□□□ 0.05
LIME1-210ENST00000621325 PIK3CD-AS1Q5SR53 167 aa15.38■□□□□ 0.05
LIME1-210ENST00000621325 PTH2Q96A98 100 aa15.38■□□□□ 0.05
LIME1-210ENST00000621325 OPRPNQ99935 248 aaPredicted RBP15.38■□□□□ 0.05
LIME1-210ENST00000621325 BEAN1Q3B7T3 259 aa15.38■□□□□ 0.05
LIME1-210ENST00000621325 SPXQ9BT56 116 aa15.38■□□□□ 0.05
LIME1-210ENST00000621325 RPL35AP18077 110 aaKnown RBP15.37■□□□□ 0.05
LIME1-210ENST00000621325 SMCPP49901 116 aaPredicted RBP15.37■□□□□ 0.05
LIME1-210ENST00000621325 EDA2RQ9HAV5 297 aa15.37■□□□□ 0.05
LIME1-210ENST00000621325 RHOHQ15669 191 aa15.37■□□□□ 0.05
LIME1-210ENST00000621325 TIMM17AQ99595 171 aa15.37■□□□□ 0.05
LIME1-210ENST00000621325 NDUFA11Q86Y39 141 aa15.36■□□□□ 0.05
LIME1-210ENST00000621325 IGLV4-69A0A075B6H9 119 aa15.36■□□□□ 0.05
LIME1-210ENST00000621325 TRBV20-1A0A075B6N2 111 aa15.36■□□□□ 0.05
LIME1-210ENST00000621325 TMEM141Q96I45 108 aa15.36■□□□□ 0.05
LIME1-210ENST00000621325 PPDPFQ9H3Y8 114 aa15.36■□□□□ 0.05
LIME1-210ENST00000621325 GAGE12JA6NER3 117 aa15.35■□□□□ 0.05
LIME1-210ENST00000621325 GAGE7O76087 117 aa15.35■□□□□ 0.05
LIME1-210ENST00000621325 GAGE12FP0CL80 117 aa15.35■□□□□ 0.05
LIME1-210ENST00000621325 GAGE12GP0CL81 117 aa15.35■□□□□ 0.05
LIME1-210ENST00000621325 GAGE12IP0CL82 117 aa15.35■□□□□ 0.05
LIME1-210ENST00000621325 GAGE4Q13068 117 aa15.35■□□□□ 0.05
LIME1-210ENST00000621325 CEND1Q8N111 149 aa15.35■□□□□ 0.05
LIME1-210ENST00000621325 C20orf203Q8NBC4 194 aa15.35■□□□□ 0.05
LIME1-210ENST00000621325 TRBV25-1A0A075B6N4 114 aa15.35■□□□□ 0.05
LIME1-210ENST00000621325 M0QXV9 152 aa15.35■□□□□ 0.05
LIME1-210ENST00000621325 PMVKQ15126 192 aa15.35■□□□□ 0.05
LIME1-210ENST00000621325 LINC01549A6NIU2 74 aa15.34■□□□□ 0.05
LIME1-210ENST00000621325 PF4P02776 101 aa15.34■□□□□ 0.05
LIME1-210ENST00000621325 IL17DQ8TAD2 202 aa15.34■□□□□ 0.05
LIME1-210ENST00000621325 C11orf86A6NJI1 115 aa15.34■□□□□ 0.05
LIME1-210ENST00000621325 RS1O15537 224 aa15.34■□□□□ 0.05
LIME1-210ENST00000621325 TRGV1A0A0A0MS02 117 aa15.33■□□□□ 0.04
LIME1-210ENST00000621325 CMC4P56277 68 aaPredicted RBP15.33■□□□□ 0.04
LIME1-210ENST00000621325 C12orf74Q32Q52 190 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms